Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 AC012603.1-201ENST00000606424 528 ntBASIC3.91□□□□□ -1.78
DKK3Q9UBP4 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC3.91□□□□□ -1.78
DKK3Q9UBP4 FRG1KP-201ENST00000623592 341 ntBASIC3.91□□□□□ -1.78
DKK3Q9UBP4 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC3.91□□□□□ -1.78
DKK3Q9UBP4 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC3.91□□□□□ -1.78
DKK3Q9UBP4 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC3.91□□□□□ -1.78
DKK3Q9UBP4 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
DKK3Q9UBP4 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
DKK3Q9UBP4 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC3.9□□□□□ -1.78
DKK3Q9UBP4 MTCO1P9-201ENST00000505577 1534 ntBASIC3.9□□□□□ -1.78
DKK3Q9UBP4 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC3.9□□□□□ -1.78
DKK3Q9UBP4 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.9□□□□□ -1.78
DKK3Q9UBP4 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC3.9□□□□□ -1.78
DKK3Q9UBP4 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC3.9□□□□□ -1.78
DKK3Q9UBP4 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
DKK3Q9UBP4 MIR514A2-201ENST00000385131 88 ntBASIC3.9□□□□□ -1.79
DKK3Q9UBP4 MIR514A3-201ENST00000385132 88 ntBASIC3.9□□□□□ -1.79
DKK3Q9UBP4 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.9□□□□□ -1.79
DKK3Q9UBP4 RNU2-29P-201ENST00000410423 189 ntBASIC3.9□□□□□ -1.79
DKK3Q9UBP4 RNA5SP107-201ENST00000411358 122 ntBASIC3.9□□□□□ -1.79
DKK3Q9UBP4 EEF1A1P40-201ENST00000412883 573 ntBASIC3.9□□□□□ -1.79
DKK3Q9UBP4 BEND7P1-201ENST00000422058 457 ntBASIC3.9□□□□□ -1.79
DKK3Q9UBP4 MTCYBP8-201ENST00000422855 651 ntBASIC3.9□□□□□ -1.79
DKK3Q9UBP4 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC3.9□□□□□ -1.79
DKK3Q9UBP4 AL365400.1-201ENST00000431854 640 ntBASIC3.9□□□□□ -1.79
DKK3Q9UBP4 GOT2P5-201ENST00000433995 546 ntBASIC3.9□□□□□ -1.79
DKK3Q9UBP4 TRAPPC2P3-201ENST00000443200 321 ntBASIC3.9□□□□□ -1.79
DKK3Q9UBP4 HMGN2P16-201ENST00000456802 261 ntBASIC3.9□□□□□ -1.79
DKK3Q9UBP4 HMGN2P26-201ENST00000463169 339 ntBASIC3.9□□□□□ -1.79
DKK3Q9UBP4 RPL21P104-201ENST00000464143 478 ntBASIC3.9□□□□□ -1.79
DKK3Q9UBP4 RPL23AP11-201ENST00000475260 469 ntBASIC3.9□□□□□ -1.79
DKK3Q9UBP4 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC3.9□□□□□ -1.79
DKK3Q9UBP4 FAM60DP-201ENST00000524174 632 ntBASIC3.9□□□□□ -1.79
DKK3Q9UBP4 AC022690.1-201ENST00000526681 550 ntBASIC3.9□□□□□ -1.79
DKK3Q9UBP4 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC3.9□□□□□ -1.79
DKK3Q9UBP4 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC3.9□□□□□ -1.79
DKK3Q9UBP4 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC3.9□□□□□ -1.79
DKK3Q9UBP4 AP001029.3-201ENST00000588063 596 ntBASIC3.9□□□□□ -1.79
DKK3Q9UBP4 SNORA51-201ENST00000606420 132 ntBASIC3.9□□□□□ -1.79
DKK3Q9UBP4 AL132765.2-201ENST00000610812 351 ntBASIC3.9□□□□□ -1.79
DKK3Q9UBP4 AC019176.2-201ENST00000611579 315 ntBASIC3.9□□□□□ -1.79
DKK3Q9UBP4 MIR6130-201ENST00000619419 109 ntBASIC3.9□□□□□ -1.79
DKK3Q9UBP4 AC012314.7-201ENST00000619693 93 ntBASIC3.9□□□□□ -1.79
DKK3Q9UBP4 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.9□□□□□ -1.79
DKK3Q9UBP4 AC039056.2-201ENST00000622261 511 ntBASIC3.9□□□□□ -1.79
DKK3Q9UBP4 AL136313.1-201ENST00000624804 202 ntBASIC3.9□□□□□ -1.79
DKK3Q9UBP4 AC010976.1-210ENST00000630740 1005 ntTSL 5 BASIC3.9□□□□□ -1.79
DKK3Q9UBP4 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC3.9□□□□□ -1.79
DKK3Q9UBP4 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
DKK3Q9UBP4 AC006026.1-201ENST00000444025 1803 ntBASIC3.9□□□□□ -1.79
DKK3Q9UBP4 ASNSP3-201ENST00000451989 1306 ntBASIC3.9□□□□□ -1.79
DKK3Q9UBP4 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
DKK3Q9UBP4 AF117829.1-206ENST00000621883 3802 ntBASIC3.89□□□□□ -1.79
DKK3Q9UBP4 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC3.89□□□□□ -1.79
DKK3Q9UBP4 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC3.89□□□□□ -1.79
DKK3Q9UBP4 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC3.89□□□□□ -1.79
DKK3Q9UBP4 RNU6-1284P-201ENST00000363701 100 ntBASIC3.89□□□□□ -1.79
DKK3Q9UBP4 RNU6-960P-201ENST00000364056 120 ntBASIC3.89□□□□□ -1.79
DKK3Q9UBP4 Y_RNA.231-201ENST00000364358 102 ntBASIC3.89□□□□□ -1.79
DKK3Q9UBP4 RNU6-116P-201ENST00000384042 109 ntBASIC3.89□□□□□ -1.79
DKK3Q9UBP4 MIR30B-201ENST00000384850 88 ntBASIC3.89□□□□□ -1.79
DKK3Q9UBP4 RNU6-903P-201ENST00000391270 109 ntBASIC3.89□□□□□ -1.79
DKK3Q9UBP4 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC3.89□□□□□ -1.79
DKK3Q9UBP4 AC092447.6-201ENST00000414578 210 ntBASIC3.89□□□□□ -1.79
DKK3Q9UBP4 NCOR1P3-201ENST00000420479 303 ntBASIC3.89□□□□□ -1.79
DKK3Q9UBP4 MTND3P16-201ENST00000452205 344 ntBASIC3.89□□□□□ -1.79
DKK3Q9UBP4 RPS27AP1-201ENST00000475545 471 ntBASIC3.89□□□□□ -1.79
DKK3Q9UBP4 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC3.89□□□□□ -1.79
DKK3Q9UBP4 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC3.89□□□□□ -1.79
DKK3Q9UBP4 AC026427.2-201ENST00000506228 536 ntBASIC3.89□□□□□ -1.79
DKK3Q9UBP4 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC3.89□□□□□ -1.79
DKK3Q9UBP4 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC3.89□□□□□ -1.79
DKK3Q9UBP4 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC3.89□□□□□ -1.79
DKK3Q9UBP4 RNU4-29P-201ENST00000515943 174 ntBASIC3.89□□□□□ -1.79
DKK3Q9UBP4 RNU6-352P-201ENST00000516908 107 ntBASIC3.89□□□□□ -1.79
DKK3Q9UBP4 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC3.89□□□□□ -1.79
DKK3Q9UBP4 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC3.89□□□□□ -1.79
DKK3Q9UBP4 PSMA2P1-201ENST00000526365 646 ntBASIC3.89□□□□□ -1.79
DKK3Q9UBP4 AC087241.2-201ENST00000535801 324 ntBASIC3.89□□□□□ -1.79
DKK3Q9UBP4 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC3.89□□□□□ -1.79
DKK3Q9UBP4 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC3.89□□□□□ -1.79
DKK3Q9UBP4 PSMA3P-201ENST00000555485 635 ntBASIC3.89□□□□□ -1.79
DKK3Q9UBP4 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC3.89□□□□□ -1.79
DKK3Q9UBP4 MIR4795-201ENST00000584182 89 ntBASIC3.89□□□□□ -1.79
DKK3Q9UBP4 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC3.89□□□□□ -1.79
DKK3Q9UBP4 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC3.89□□□□□ -1.79
DKK3Q9UBP4 AC005344.1-201ENST00000613391 459 ntBASIC3.89□□□□□ -1.79
DKK3Q9UBP4 AL591424.2-201ENST00000617023 128 ntBASIC3.89□□□□□ -1.79
DKK3Q9UBP4 AC009248.2-201ENST00000619826 254 ntBASIC3.89□□□□□ -1.79
DKK3Q9UBP4 AC090617.10-201ENST00000624308 134 ntBASIC3.89□□□□□ -1.79
DKK3Q9UBP4 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC3.89□□□□□ -1.79
DKK3Q9UBP4 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC3.89□□□□□ -1.79
DKK3Q9UBP4 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
DKK3Q9UBP4 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC3.89□□□□□ -1.79
DKK3Q9UBP4 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC3.89□□□□□ -1.79
DKK3Q9UBP4 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
DKK3Q9UBP4 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
DKK3Q9UBP4 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC3.88□□□□□ -1.79
DKK3Q9UBP4 RNU6-641P-201ENST00000384006 107 ntBASIC3.88□□□□□ -1.79
DKK3Q9UBP4 RNU6-1181P-201ENST00000384191 106 ntBASIC3.88□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 100.5 ms