Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC2.86□□□□□ -1.95
VPS54Q9P1Q0 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
VPS54Q9P1Q0 AL049641.1-201ENST00000441055 1948 ntBASIC2.85□□□□□ -1.95
VPS54Q9P1Q0 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC2.85□□□□□ -1.95
VPS54Q9P1Q0 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
VPS54Q9P1Q0 AP000568.1-201ENST00000282964 442 ntBASIC2.85□□□□□ -1.95
VPS54Q9P1Q0 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC2.85□□□□□ -1.95
VPS54Q9P1Q0 RNA5SP456-201ENST00000364002 114 ntBASIC2.85□□□□□ -1.95
VPS54Q9P1Q0 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC2.85□□□□□ -1.95
VPS54Q9P1Q0 AC078974.1-201ENST00000411597 223 ntBASIC2.85□□□□□ -1.95
VPS54Q9P1Q0 Z85995.1-201ENST00000415547 335 ntBASIC2.85□□□□□ -1.95
VPS54Q9P1Q0 HMGN2P30-201ENST00000423237 256 ntBASIC2.85□□□□□ -1.95
VPS54Q9P1Q0 FCF1P1-201ENST00000432690 571 ntBASIC2.85□□□□□ -1.95
VPS54Q9P1Q0 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC2.85□□□□□ -1.95
VPS54Q9P1Q0 MTCO1P42-201ENST00000457379 726 ntBASIC2.85□□□□□ -1.95
VPS54Q9P1Q0 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC2.85□□□□□ -1.95
VPS54Q9P1Q0 AC116347.2-201ENST00000514912 523 ntBASIC2.85□□□□□ -1.95
VPS54Q9P1Q0 RNU6-390P-201ENST00000516259 103 ntBASIC2.85□□□□□ -1.95
VPS54Q9P1Q0 NRON-201ENST00000517270 370 ntBASIC2.85□□□□□ -1.95
VPS54Q9P1Q0 AP002748.2-201ENST00000528671 348 ntBASIC2.85□□□□□ -1.95
VPS54Q9P1Q0 CCDC179-202ENST00000532798 791 ntAPPRIS P1 TSL 2 BASIC2.85□□□□□ -1.95
VPS54Q9P1Q0 LRRC34P1-201ENST00000542742 915 ntBASIC2.85□□□□□ -1.95
VPS54Q9P1Q0 AC012435.1-202ENST00000568772 240 ntBASIC2.85□□□□□ -1.95
VPS54Q9P1Q0 MIR3162-201ENST00000581818 82 ntBASIC2.85□□□□□ -1.95
VPS54Q9P1Q0 AP001004.1-201ENST00000582468 324 ntBASIC2.85□□□□□ -1.95
VPS54Q9P1Q0 MIR4672-201ENST00000583126 81 ntBASIC2.85□□□□□ -1.95
VPS54Q9P1Q0 AC020895.1-201ENST00000595362 272 ntBASIC2.85□□□□□ -1.95
VPS54Q9P1Q0 NRBF2P5-201ENST00000603087 788 ntBASIC2.85□□□□□ -1.95
VPS54Q9P1Q0 AC019159.1-201ENST00000605094 187 ntBASIC2.85□□□□□ -1.95
VPS54Q9P1Q0 RPL23AP88-201ENST00000605759 454 ntBASIC2.85□□□□□ -1.95
VPS54Q9P1Q0 AC007038.2-201ENST00000608095 740 ntBASIC2.85□□□□□ -1.95
VPS54Q9P1Q0 AL356266.1-201ENST00000623311 483 ntBASIC2.85□□□□□ -1.95
VPS54Q9P1Q0 VPS8-228ENST00000628962 207 ntTSL 5 BASIC2.85□□□□□ -1.95
VPS54Q9P1Q0 AC099654.7-201ENST00000635788 2127 ntBASIC2.85□□□□□ -1.95
VPS54Q9P1Q0 AC069528.2-201ENST00000624849 1991 ntBASIC2.85□□□□□ -1.95
VPS54Q9P1Q0 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC2.85□□□□□ -1.95
VPS54Q9P1Q0 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
VPS54Q9P1Q0 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC2.85□□□□□ -1.95
VPS54Q9P1Q0 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC2.84□□□□□ -1.95
VPS54Q9P1Q0 RNU6-223P-201ENST00000362830 107 ntBASIC2.84□□□□□ -1.95
VPS54Q9P1Q0 SNORA25.6-201ENST00000364121 118 ntBASIC2.84□□□□□ -1.95
VPS54Q9P1Q0 RNU6-1035P-201ENST00000384477 107 ntBASIC2.84□□□□□ -1.95
VPS54Q9P1Q0 AL109755.1-201ENST00000401791 649 ntBASIC2.84□□□□□ -1.95
VPS54Q9P1Q0 AC009963.1-201ENST00000417265 157 ntBASIC2.84□□□□□ -1.95
VPS54Q9P1Q0 AL596220.1-202ENST00000429768 314 ntTSL 3 BASIC2.84□□□□□ -1.95
VPS54Q9P1Q0 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC2.84□□□□□ -1.95
VPS54Q9P1Q0 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC2.84□□□□□ -1.95
VPS54Q9P1Q0 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC2.84□□□□□ -1.95
VPS54Q9P1Q0 AL138830.1-201ENST00000435802 402 ntTSL 3 BASIC2.84□□□□□ -1.95
VPS54Q9P1Q0 CBWD4P-201ENST00000445695 655 ntBASIC2.84□□□□□ -1.95
VPS54Q9P1Q0 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC2.84□□□□□ -1.95
VPS54Q9P1Q0 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC2.84□□□□□ -1.95
VPS54Q9P1Q0 AP000705.1-201ENST00000454567 350 ntBASIC2.84□□□□□ -1.95
VPS54Q9P1Q0 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC2.84□□□□□ -1.95
VPS54Q9P1Q0 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC2.84□□□□□ -1.95
VPS54Q9P1Q0 RPL23AP45-201ENST00000476406 468 ntBASIC2.84□□□□□ -1.95
VPS54Q9P1Q0 C4orf33-204ENST00000502887 1126 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
VPS54Q9P1Q0 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC2.84□□□□□ -1.95
VPS54Q9P1Q0 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC2.84□□□□□ -1.95
VPS54Q9P1Q0 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC2.84□□□□□ -1.95
VPS54Q9P1Q0 RAC1P5-201ENST00000512182 576 ntBASIC2.84□□□□□ -1.95
VPS54Q9P1Q0 AC093766.1-202ENST00000513400 718 ntTSL 3 BASIC2.84□□□□□ -1.95
VPS54Q9P1Q0 RNU6-1129P-201ENST00000515964 104 ntBASIC2.84□□□□□ -1.95
VPS54Q9P1Q0 Y_RNA.717-201ENST00000517106 92 ntBASIC2.84□□□□□ -1.95
VPS54Q9P1Q0 AC090136.1-201ENST00000520009 240 ntBASIC2.84□□□□□ -1.95
VPS54Q9P1Q0 AP000907.2-201ENST00000530827 353 ntBASIC2.84□□□□□ -1.95
VPS54Q9P1Q0 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC2.84□□□□□ -1.95
VPS54Q9P1Q0 AC068790.3-201ENST00000602988 553 ntBASIC2.84□□□□□ -1.95
VPS54Q9P1Q0 AL355472.4-201ENST00000610233 626 ntBASIC2.84□□□□□ -1.95
VPS54Q9P1Q0 AL359198.2-201ENST00000611836 194 ntBASIC2.84□□□□□ -1.95
VPS54Q9P1Q0 SDR42E1P2-201ENST00000614861 481 ntBASIC2.84□□□□□ -1.95
VPS54Q9P1Q0 AC131159.1-201ENST00000621854 213 ntBASIC2.84□□□□□ -1.95
VPS54Q9P1Q0 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC2.84□□□□□ -1.95
VPS54Q9P1Q0 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC2.84□□□□□ -1.96
VPS54Q9P1Q0 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
VPS54Q9P1Q0 SPA17-201ENST00000227135 853 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
VPS54Q9P1Q0 Y_RNA.97-201ENST00000363094 102 ntBASIC2.83□□□□□ -1.96
VPS54Q9P1Q0 MEIG1-201ENST00000378240 507 ntAPPRIS P1 TSL 2 BASIC2.83□□□□□ -1.96
VPS54Q9P1Q0 MIR634-201ENST00000385208 97 ntBASIC2.83□□□□□ -1.96
VPS54Q9P1Q0 U8.14-201ENST00000390843 143 ntBASIC2.83□□□□□ -1.96
VPS54Q9P1Q0 BX682237.1-201ENST00000415016 335 ntBASIC2.83□□□□□ -1.96
VPS54Q9P1Q0 LURAP1L-AS1-201ENST00000417638 799 ntTSL 3 BASIC2.83□□□□□ -1.96
VPS54Q9P1Q0 AL645937.4-201ENST00000419702 389 ntTSL 2 BASIC2.83□□□□□ -1.96
VPS54Q9P1Q0 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC2.83□□□□□ -1.96
VPS54Q9P1Q0 MYCBP2-AS2-201ENST00000428716 428 ntTSL 5 BASIC2.83□□□□□ -1.96
VPS54Q9P1Q0 AC007919.1-201ENST00000429380 217 ntBASIC2.83□□□□□ -1.96
VPS54Q9P1Q0 ARPC3P1-201ENST00000437218 533 ntBASIC2.83□□□□□ -1.96
VPS54Q9P1Q0 MTCYBP39-201ENST00000437562 491 ntBASIC2.83□□□□□ -1.96
VPS54Q9P1Q0 AL139237.2-201ENST00000438454 493 ntTSL 3 BASIC2.83□□□□□ -1.96
VPS54Q9P1Q0 KRTAP19-11P-201ENST00000439851 104 ntBASIC2.83□□□□□ -1.96
VPS54Q9P1Q0 MTCO3P45-201ENST00000443036 613 ntBASIC2.83□□□□□ -1.96
VPS54Q9P1Q0 DDX3P2-201ENST00000446138 111 ntBASIC2.83□□□□□ -1.96
VPS54Q9P1Q0 AC068587.2-201ENST00000478386 781 ntBASIC2.83□□□□□ -1.96
VPS54Q9P1Q0 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
VPS54Q9P1Q0 RPS27P27-201ENST00000498779 255 ntBASIC2.83□□□□□ -1.96
VPS54Q9P1Q0 LINC02173-201ENST00000504132 521 ntTSL 2 BASIC2.83□□□□□ -1.96
VPS54Q9P1Q0 SEM1P1-201ENST00000506694 209 ntBASIC2.83□□□□□ -1.96
VPS54Q9P1Q0 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC2.83□□□□□ -1.96
VPS54Q9P1Q0 HMGB1P41-201ENST00000520234 440 ntBASIC2.83□□□□□ -1.96
VPS54Q9P1Q0 RPL7P20-201ENST00000520308 745 ntBASIC2.83□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 115.6 ms