Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 SNRPCP2-201ENST00000504370 475 ntBASIC3.93□□□□□ -1.78
CCDC140Q96MF4 Y_RNA.715-201ENST00000517082 110 ntBASIC3.93□□□□□ -1.78
CCDC140Q96MF4 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC3.93□□□□□ -1.78
CCDC140Q96MF4 AP004607.1-201ENST00000524456 203 ntBASIC3.93□□□□□ -1.78
CCDC140Q96MF4 AL590705.4-201ENST00000532209 134 ntBASIC3.93□□□□□ -1.78
CCDC140Q96MF4 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC3.93□□□□□ -1.78
CCDC140Q96MF4 AC113418.1-201ENST00000569928 517 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
CCDC140Q96MF4 VN1R91P-201ENST00000594377 169 ntBASIC3.93□□□□□ -1.78
CCDC140Q96MF4 AC024153.1-201ENST00000603103 365 ntBASIC3.93□□□□□ -1.78
CCDC140Q96MF4 AC006557.5-201ENST00000603126 811 ntBASIC3.93□□□□□ -1.78
CCDC140Q96MF4 AL355297.3-201ENST00000604082 446 ntBASIC3.93□□□□□ -1.78
CCDC140Q96MF4 HMGB1P50-201ENST00000605814 607 ntBASIC3.93□□□□□ -1.78
CCDC140Q96MF4 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC3.93□□□□□ -1.78
CCDC140Q96MF4 U2.1-201ENST00000618978 145 ntBASIC3.93□□□□□ -1.78
CCDC140Q96MF4 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC3.93□□□□□ -1.78
CCDC140Q96MF4 AL713922.2-201ENST00000619384 716 ntBASIC3.93□□□□□ -1.78
CCDC140Q96MF4 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC3.93□□□□□ -1.78
CCDC140Q96MF4 FAM46D-202ENST00000538312 3106 ntAPPRIS P1 TSL 2 BASIC3.93□□□□□ -1.78
CCDC140Q96MF4 CCNT1-205ENST00000618666 6915 ntTSL 2 BASIC3.93□□□□□ -1.78
CCDC140Q96MF4 SYT14-206ENST00000537238 5208 ntAPPRIS ALT2 TSL 5 BASIC3.93□□□□□ -1.78
CCDC140Q96MF4 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC3.93□□□□□ -1.78
CCDC140Q96MF4 SENP1-205ENST00000549595 1932 ntAPPRIS ALT1 TSL 5 BASIC3.93□□□□□ -1.78
CCDC140Q96MF4 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC3.93□□□□□ -1.78
CCDC140Q96MF4 WEE2-201ENST00000397541 3061 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
CCDC140Q96MF4 PDS5B-201ENST00000315596 7497 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
CCDC140Q96MF4 CLSPN-206ENST00000520551 4010 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
CCDC140Q96MF4 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
CCDC140Q96MF4 DCTN4-201ENST00000424236 4054 ntTSL 2 BASIC3.92□□□□□ -1.78
CCDC140Q96MF4 ZNF560-201ENST00000301480 2654 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
CCDC140Q96MF4 BDNF-AS-202ENST00000499568 2039 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
CCDC140Q96MF4 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC3.92□□□□□ -1.78
CCDC140Q96MF4 NCOA3-201ENST00000371997 6750 ntAPPRIS ALT2 TSL 1 (best) BASIC3.92□□□□□ -1.78
CCDC140Q96MF4 NBPF14-206ENST00000614999 10080 ntTSL 5 BASIC3.92□□□□□ -1.78
CCDC140Q96MF4 MYO9A-203ENST00000444904 7749 ntAPPRIS P2 TSL 5 BASIC3.92□□□□□ -1.78
CCDC140Q96MF4 MYNN-203ENST00000544106 4815 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
CCDC140Q96MF4 PCDH15-201ENST00000320301 6845 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
CCDC140Q96MF4 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
CCDC140Q96MF4 OR56B2P-202ENST00000641377 2453 ntBASIC3.92□□□□□ -1.78
CCDC140Q96MF4 AC005005.4-201ENST00000623789 16698 ntBASIC3.92□□□□□ -1.78
CCDC140Q96MF4 SNURFL-201ENST00000309296 343 ntBASIC3.92□□□□□ -1.78
CCDC140Q96MF4 RPL23P2-201ENST00000320371 421 ntBASIC3.92□□□□□ -1.78
CCDC140Q96MF4 RNU6-858P-201ENST00000362436 107 ntBASIC3.92□□□□□ -1.78
CCDC140Q96MF4 RNU6-105P-201ENST00000363909 104 ntBASIC3.92□□□□□ -1.78
CCDC140Q96MF4 OR51I1-201ENST00000380211 945 ntAPPRIS P1 BASIC3.92□□□□□ -1.78
CCDC140Q96MF4 SPTLC1P2-201ENST00000407089 121 ntBASIC3.92□□□□□ -1.78
CCDC140Q96MF4 RPS20P14-201ENST00000412545 360 ntBASIC3.92□□□□□ -1.78
CCDC140Q96MF4 RPL26P27-201ENST00000414397 437 ntBASIC3.92□□□□□ -1.78
CCDC140Q96MF4 MTCO3P29-201ENST00000432119 779 ntBASIC3.92□□□□□ -1.78
CCDC140Q96MF4 AL731563.1-201ENST00000442202 214 ntBASIC3.92□□□□□ -1.78
CCDC140Q96MF4 AL354714.3-201ENST00000447284 493 ntBASIC3.92□□□□□ -1.78
CCDC140Q96MF4 AC079354.2-201ENST00000453523 154 ntBASIC3.92□□□□□ -1.78
CCDC140Q96MF4 AL356981.1-201ENST00000454879 684 ntBASIC3.92□□□□□ -1.78
CCDC140Q96MF4 HMGN2P16-201ENST00000456802 261 ntBASIC3.92□□□□□ -1.78
CCDC140Q96MF4 AC006026.2-201ENST00000457376 180 ntBASIC3.92□□□□□ -1.78
CCDC140Q96MF4 RNU7-87P-201ENST00000459343 62 ntBASIC3.92□□□□□ -1.78
CCDC140Q96MF4 RPL23AP14-201ENST00000468281 468 ntBASIC3.92□□□□□ -1.78
CCDC140Q96MF4 AC034236.1-201ENST00000469891 373 ntBASIC3.92□□□□□ -1.78
CCDC140Q96MF4 AC097484.1-201ENST00000471148 389 ntBASIC3.92□□□□□ -1.78
CCDC140Q96MF4 BX284632.1-201ENST00000478218 541 ntBASIC3.92□□□□□ -1.78
CCDC140Q96MF4 FAM107B-218ENST00000479731 570 ntAPPRIS P1 TSL 3 BASIC3.92□□□□□ -1.78
CCDC140Q96MF4 AC008958.1-201ENST00000511047 682 ntBASIC3.92□□□□□ -1.78
CCDC140Q96MF4 RN7SKP260-201ENST00000516907 149 ntBASIC3.92□□□□□ -1.78
CCDC140Q96MF4 AC021242.2-201ENST00000522765 454 ntTSL 3 BASIC3.92□□□□□ -1.78
CCDC140Q96MF4 AC025437.5-201ENST00000522769 314 ntTSL 3 BASIC3.92□□□□□ -1.78
CCDC140Q96MF4 AC007458.1-201ENST00000542812 373 ntBASIC3.92□□□□□ -1.78
CCDC140Q96MF4 APPL2-203ENST00000546731 684 ntTSL 2 BASIC3.92□□□□□ -1.78
CCDC140Q96MF4 NDUFB4P11-201ENST00000560510 395 ntBASIC3.92□□□□□ -1.78
CCDC140Q96MF4 VN1R107P-201ENST00000601784 209 ntBASIC3.92□□□□□ -1.78
CCDC140Q96MF4 AC012468.1-201ENST00000604888 430 ntBASIC3.92□□□□□ -1.78
CCDC140Q96MF4 AC034238.1-215ENST00000609792 219 ntTSL 5 BASIC3.92□□□□□ -1.78
CCDC140Q96MF4 AL021879.1-201ENST00000611756 288 ntBASIC3.92□□□□□ -1.78
CCDC140Q96MF4 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC3.92□□□□□ -1.78
CCDC140Q96MF4 MIR6730-201ENST00000622213 67 ntBASIC3.92□□□□□ -1.78
CCDC140Q96MF4 AC241585.2-209ENST00000638217 143 ntBASIC3.92□□□□□ -1.78
CCDC140Q96MF4 SRP72P2-201ENST00000344851 1979 ntBASIC3.92□□□□□ -1.78
CCDC140Q96MF4 AC009541.1-201ENST00000438279 2662 ntBASIC3.92□□□□□ -1.78
CCDC140Q96MF4 CACNB4-273ENST00000638091 4061 ntTSL 5 BASIC3.92□□□□□ -1.78
CCDC140Q96MF4 HEATR5A-203ENST00000543095 7840 ntAPPRIS P1 TSL 5 BASIC3.92□□□□□ -1.78
CCDC140Q96MF4 SCN1A-218ENST00000640036 8131 ntAPPRIS ALT1 TSL 5 BASIC3.92□□□□□ -1.78
CCDC140Q96MF4 IREB2-201ENST00000258886 6354 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
CCDC140Q96MF4 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC3.92□□□□□ -1.78
CCDC140Q96MF4 WDR5B-201ENST00000330689 3720 ntAPPRIS P1 BASIC3.92□□□□□ -1.78
CCDC140Q96MF4 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC3.91□□□□□ -1.78
CCDC140Q96MF4 BBX-206ENST00000415149 8930 ntAPPRIS P3 TSL 1 (best) BASIC3.91□□□□□ -1.78
CCDC140Q96MF4 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC3.91□□□□□ -1.78
CCDC140Q96MF4 KCTD16-201ENST00000507359 13950 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
CCDC140Q96MF4 HMCN1-201ENST00000271588 18208 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
CCDC140Q96MF4 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC3.91□□□□□ -1.78
CCDC140Q96MF4 PDE4B-201ENST00000329654 3998 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
CCDC140Q96MF4 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC3.91□□□□□ -1.78
CCDC140Q96MF4 GABRG2-214ENST00000639111 11735 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
CCDC140Q96MF4 GUCY1A3-201ENST00000296518 4400 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
CCDC140Q96MF4 Y_RNA.405-201ENST00000383979 100 ntBASIC3.91□□□□□ -1.78
CCDC140Q96MF4 Y_RNA.451-201ENST00000384200 100 ntBASIC3.91□□□□□ -1.78
CCDC140Q96MF4 RNU1-106P-201ENST00000384382 164 ntBASIC3.91□□□□□ -1.78
CCDC140Q96MF4 RNU6-1035P-201ENST00000384477 107 ntBASIC3.91□□□□□ -1.78
CCDC140Q96MF4 Y_RNA.524-201ENST00000384564 100 ntBASIC3.91□□□□□ -1.78
CCDC140Q96MF4 Y_RNA.561-201ENST00000384694 100 ntBASIC3.91□□□□□ -1.78
CCDC140Q96MF4 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
CCDC140Q96MF4 MIR888-201ENST00000401186 77 ntBASIC3.91□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 135.2 ms