Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 ANKRD26P2-201ENST00000445530 1710 ntBASIC3.19□□□□□ -1.9
BEST3Q8N1M1 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
BEST3Q8N1M1 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC3.19□□□□□ -1.9
BEST3Q8N1M1 RNU6-188P-201ENST00000364207 107 ntBASIC3.19□□□□□ -1.9
BEST3Q8N1M1 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC3.19□□□□□ -1.9
BEST3Q8N1M1 Y_RNA.481-201ENST00000384373 102 ntBASIC3.19□□□□□ -1.9
BEST3Q8N1M1 MIR1-2-201ENST00000384961 85 ntBASIC3.19□□□□□ -1.9
BEST3Q8N1M1 MIR483-201ENST00000385070 76 ntBASIC3.19□□□□□ -1.9
BEST3Q8N1M1 CALM2P3-201ENST00000400429 449 ntBASIC3.19□□□□□ -1.9
BEST3Q8N1M1 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC3.19□□□□□ -1.9
BEST3Q8N1M1 UBE2Q2P12-201ENST00000414573 204 ntBASIC3.19□□□□□ -1.9
BEST3Q8N1M1 AC017079.2-201ENST00000416102 485 ntBASIC3.19□□□□□ -1.9
BEST3Q8N1M1 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC3.19□□□□□ -1.9
BEST3Q8N1M1 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC3.19□□□□□ -1.9
BEST3Q8N1M1 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC3.19□□□□□ -1.9
BEST3Q8N1M1 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC3.19□□□□□ -1.9
BEST3Q8N1M1 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC3.19□□□□□ -1.9
BEST3Q8N1M1 USP9YP28-201ENST00000435142 589 ntBASIC3.19□□□□□ -1.9
BEST3Q8N1M1 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC3.19□□□□□ -1.9
BEST3Q8N1M1 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC3.19□□□□□ -1.9
BEST3Q8N1M1 HMGB3P8-201ENST00000449709 577 ntBASIC3.19□□□□□ -1.9
BEST3Q8N1M1 AC084357.1-201ENST00000473404 255 ntBASIC3.19□□□□□ -1.9
BEST3Q8N1M1 RPS4XP22-201ENST00000480755 780 ntBASIC3.19□□□□□ -1.9
BEST3Q8N1M1 AC019235.1-201ENST00000503847 207 ntBASIC3.19□□□□□ -1.9
BEST3Q8N1M1 AC116562.3-201ENST00000506136 177 ntBASIC3.19□□□□□ -1.9
BEST3Q8N1M1 RNU6-927P-201ENST00000516199 100 ntBASIC3.19□□□□□ -1.9
BEST3Q8N1M1 IGKV2-26-201ENST00000518305 343 ntBASIC3.19□□□□□ -1.9
BEST3Q8N1M1 IGKV2-23-201ENST00000518729 323 ntBASIC3.19□□□□□ -1.9
BEST3Q8N1M1 AC104211.3-201ENST00000518861 270 ntTSL 3 BASIC3.19□□□□□ -1.9
BEST3Q8N1M1 AP006587.4-201ENST00000526053 529 ntBASIC3.19□□□□□ -1.9
BEST3Q8N1M1 AC068587.5-201ENST00000528506 175 ntBASIC3.19□□□□□ -1.9
BEST3Q8N1M1 TGIF1P1-201ENST00000558095 802 ntBASIC3.19□□□□□ -1.9
BEST3Q8N1M1 ZNF192P1-203ENST00000565888 810 ntBASIC3.19□□□□□ -1.9
BEST3Q8N1M1 HMGB1P6-201ENST00000569046 646 ntBASIC3.19□□□□□ -1.9
BEST3Q8N1M1 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC3.19□□□□□ -1.9
BEST3Q8N1M1 AC025165.5-201ENST00000602802 578 ntBASIC3.19□□□□□ -1.9
BEST3Q8N1M1 AC025449.1-201ENST00000603896 529 ntBASIC3.19□□□□□ -1.9
BEST3Q8N1M1 AC107304.1-201ENST00000604229 296 ntBASIC3.19□□□□□ -1.9
BEST3Q8N1M1 AL121992.2-201ENST00000606262 256 ntBASIC3.19□□□□□ -1.9
BEST3Q8N1M1 AC126118.1-201ENST00000607744 628 ntBASIC3.19□□□□□ -1.9
BEST3Q8N1M1 AC092954.2-201ENST00000609103 430 ntBASIC3.19□□□□□ -1.9
BEST3Q8N1M1 AL589994.2-201ENST00000621124 579 ntBASIC3.19□□□□□ -1.9
BEST3Q8N1M1 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC3.19□□□□□ -1.9
BEST3Q8N1M1 AL157786.1-207ENST00000627771 695 ntBASIC3.19□□□□□ -1.9
BEST3Q8N1M1 SRP54-214ENST00000630962 162 ntTSL 5 BASIC3.19□□□□□ -1.9
BEST3Q8N1M1 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.19□□□□□ -1.9
BEST3Q8N1M1 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC3.19□□□□□ -1.9
BEST3Q8N1M1 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC3.19□□□□□ -1.9
BEST3Q8N1M1 MTND5P17-201ENST00000418405 1603 ntBASIC3.19□□□□□ -1.9
BEST3Q8N1M1 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC3.19□□□□□ -1.9
BEST3Q8N1M1 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.18□□□□□ -1.9
BEST3Q8N1M1 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.18□□□□□ -1.9
BEST3Q8N1M1 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC3.18□□□□□ -1.9
BEST3Q8N1M1 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC3.18□□□□□ -1.9
BEST3Q8N1M1 RNU6-1085P-201ENST00000363576 107 ntBASIC3.18□□□□□ -1.9
BEST3Q8N1M1 Y_RNA.367-201ENST00000365544 101 ntBASIC3.18□□□□□ -1.9
BEST3Q8N1M1 SMIM11P1-201ENST00000369586 178 ntBASIC3.18□□□□□ -1.9
BEST3Q8N1M1 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC3.18□□□□□ -1.9
BEST3Q8N1M1 RPS4XP8-201ENST00000402039 771 ntBASIC3.18□□□□□ -1.9
BEST3Q8N1M1 AL136116.1-201ENST00000403591 381 ntBASIC3.18□□□□□ -1.9
BEST3Q8N1M1 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC3.18□□□□□ -1.9
BEST3Q8N1M1 AC005300.1-201ENST00000428401 373 ntBASIC3.18□□□□□ -1.9
BEST3Q8N1M1 AC005326.1-201ENST00000429197 123 ntBASIC3.18□□□□□ -1.9
BEST3Q8N1M1 AL158071.1-201ENST00000430315 461 ntBASIC3.18□□□□□ -1.9
BEST3Q8N1M1 MTATP6P16-201ENST00000434543 526 ntBASIC3.18□□□□□ -1.9
BEST3Q8N1M1 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC3.18□□□□□ -1.9
BEST3Q8N1M1 NEFMP1-201ENST00000443423 1006 ntBASIC3.18□□□□□ -1.9
BEST3Q8N1M1 DDX3P2-201ENST00000446138 111 ntBASIC3.18□□□□□ -1.9
BEST3Q8N1M1 MRPS31P2-201ENST00000451581 518 ntBASIC3.18□□□□□ -1.9
BEST3Q8N1M1 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC3.18□□□□□ -1.9
BEST3Q8N1M1 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC3.18□□□□□ -1.9
BEST3Q8N1M1 CEACAMP4-201ENST00000457676 421 ntBASIC3.18□□□□□ -1.9
BEST3Q8N1M1 AC093663.1-201ENST00000497190 394 ntBASIC3.18□□□□□ -1.9
BEST3Q8N1M1 ENSA-210ENST00000503241 574 ntTSL 3 BASIC3.18□□□□□ -1.9
BEST3Q8N1M1 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC3.18□□□□□ -1.9
BEST3Q8N1M1 SNORA31.3-201ENST00000516029 96 ntBASIC3.18□□□□□ -1.9
BEST3Q8N1M1 SNORD27.1-201ENST00000516319 72 ntBASIC3.18□□□□□ -1.9
BEST3Q8N1M1 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC3.18□□□□□ -1.9
BEST3Q8N1M1 NDUFB9P3-201ENST00000521269 501 ntBASIC3.18□□□□□ -1.9
BEST3Q8N1M1 AP001646.1-201ENST00000527936 915 ntBASIC3.18□□□□□ -1.9
BEST3Q8N1M1 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC3.18□□□□□ -1.9
BEST3Q8N1M1 OR5V1-216ENST00000543825 1048 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
BEST3Q8N1M1 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC3.18□□□□□ -1.9
BEST3Q8N1M1 AC037471.2-201ENST00000564941 598 ntBASIC3.18□□□□□ -1.9
BEST3Q8N1M1 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC3.18□□□□□ -1.9
BEST3Q8N1M1 MIR3200-201ENST00000580767 85 ntBASIC3.18□□□□□ -1.9
BEST3Q8N1M1 AC002545.1-201ENST00000592511 181 ntBASIC3.18□□□□□ -1.9
BEST3Q8N1M1 AC174048.1-201ENST00000603389 144 ntBASIC3.18□□□□□ -1.9
BEST3Q8N1M1 AC104763.2-201ENST00000604179 382 ntBASIC3.18□□□□□ -1.9
BEST3Q8N1M1 AC007363.1-201ENST00000604736 620 ntBASIC3.18□□□□□ -1.9
BEST3Q8N1M1 AL110115.1-201ENST00000614396 364 ntBASIC3.18□□□□□ -1.9
BEST3Q8N1M1 AC139792.3-201ENST00000623525 224 ntBASIC3.18□□□□□ -1.9
BEST3Q8N1M1 PCNP-208ENST00000627393 136 ntTSL 2 BASIC3.18□□□□□ -1.9
BEST3Q8N1M1 TEX41-280ENST00000629185 591 ntTSL 5 BASIC3.18□□□□□ -1.9
BEST3Q8N1M1 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
BEST3Q8N1M1 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
BEST3Q8N1M1 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC3.18□□□□□ -1.9
BEST3Q8N1M1 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC3.18□□□□□ -1.9
BEST3Q8N1M1 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC3.18□□□□□ -1.9
BEST3Q8N1M1 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.18□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 143.9 ms