Protein–RNA interactions for Protein: Q8IYX3

CCDC116, Coiled-coil domain-containing protein 116, humanhuman

Predictions only

Length 515 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC116Q8IYX3 RANBP3L-201ENST00000296604 3104 ntAPPRIS P3 TSL 1 (best) BASIC5.15□□□□□ -1.59
CCDC116Q8IYX3 PRKAA1-204ENST00000397128 5088 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
CCDC116Q8IYX3 GAPT-202ENST00000396776 3016 ntAPPRIS P1 TSL 2 BASIC5.15□□□□□ -1.59
CCDC116Q8IYX3 MAPK10-304ENST00000641341 3984 ntBASIC5.14□□□□□ -1.59
CCDC116Q8IYX3 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC5.14□□□□□ -1.59
CCDC116Q8IYX3 ADAM18-202ENST00000379866 2314 ntAPPRIS ALT2 TSL 1 (best) BASIC5.14□□□□□ -1.59
CCDC116Q8IYX3 EMSY-206ENST00000525038 4376 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
CCDC116Q8IYX3 PIK3C3-201ENST00000262039 9443 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
CCDC116Q8IYX3 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
CCDC116Q8IYX3 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
CCDC116Q8IYX3 RAPGEF4-213ENST00000535187 3707 ntTSL 2 BASIC5.14□□□□□ -1.59
CCDC116Q8IYX3 WFDC11-202ENST00000356562 642 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
CCDC116Q8IYX3 RNU6-653P-201ENST00000363074 106 ntBASIC5.14□□□□□ -1.59
CCDC116Q8IYX3 Y_RNA.261-201ENST00000364631 102 ntBASIC5.14□□□□□ -1.59
CCDC116Q8IYX3 RNU4-56P-201ENST00000364700 142 ntBASIC5.14□□□□□ -1.59
CCDC116Q8IYX3 SNORA70E-201ENST00000384492 135 ntBASIC5.14□□□□□ -1.59
CCDC116Q8IYX3 Y_RNA.571-201ENST00000384753 98 ntBASIC5.14□□□□□ -1.59
CCDC116Q8IYX3 RPS29P14-201ENST00000431518 171 ntBASIC5.14□□□□□ -1.59
CCDC116Q8IYX3 AP000281.1-201ENST00000444036 316 ntBASIC5.14□□□□□ -1.59
CCDC116Q8IYX3 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC5.14□□□□□ -1.59
CCDC116Q8IYX3 AL161636.2-201ENST00000445179 927 ntBASIC5.14□□□□□ -1.59
CCDC116Q8IYX3 LINC01880-201ENST00000446593 561 ntTSL 4 BASIC5.14□□□□□ -1.59
CCDC116Q8IYX3 RPL23AP3-201ENST00000453844 468 ntBASIC5.14□□□□□ -1.59
CCDC116Q8IYX3 AC114982.1-201ENST00000469402 321 ntBASIC5.14□□□□□ -1.59
CCDC116Q8IYX3 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC5.14□□□□□ -1.59
CCDC116Q8IYX3 CLEC19A-204ENST00000493231 557 ntTSL 3 BASIC5.14□□□□□ -1.59
CCDC116Q8IYX3 AC010265.1-201ENST00000513509 211 ntBASIC5.14□□□□□ -1.59
CCDC116Q8IYX3 RN7SKP49-201ENST00000516675 260 ntBASIC5.14□□□□□ -1.59
CCDC116Q8IYX3 RNU6-919P-201ENST00000516731 104 ntBASIC5.14□□□□□ -1.59
CCDC116Q8IYX3 LINC02293-202ENST00000548385 358 ntTSL 3 BASIC5.14□□□□□ -1.59
CCDC116Q8IYX3 LINC00933-205ENST00000560917 449 ntTSL 3 BASIC5.14□□□□□ -1.59
CCDC116Q8IYX3 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC5.14□□□□□ -1.59
CCDC116Q8IYX3 KLKP1-201ENST00000595979 403 ntBASIC5.14□□□□□ -1.59
CCDC116Q8IYX3 FO393422.1-201ENST00000603908 708 ntBASIC5.14□□□□□ -1.59
CCDC116Q8IYX3 uc_338.7-201ENST00000621834 124 ntBASIC5.14□□□□□ -1.59
CCDC116Q8IYX3 AC006001.4-201ENST00000622243 395 ntBASIC5.14□□□□□ -1.59
CCDC116Q8IYX3 Metazoa_SRP.130-201ENST00000622625 267 ntBASIC5.14□□□□□ -1.59
CCDC116Q8IYX3 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC5.14□□□□□ -1.59
CCDC116Q8IYX3 SFT2D2-201ENST00000271375 11040 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
CCDC116Q8IYX3 LINC01091-203ENST00000514823 5262 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
CCDC116Q8IYX3 DLGAP5-202ENST00000395425 2954 ntAPPRIS ALT2 TSL 1 (best) BASIC5.14□□□□□ -1.59
CCDC116Q8IYX3 PTPRB-202ENST00000334414 12316 ntAPPRIS P4 TSL 1 (best) BASIC5.14□□□□□ -1.59
CCDC116Q8IYX3 ZBTB38-202ENST00000441582 3662 ntAPPRIS P1 TSL 2 BASIC5.14□□□□□ -1.59
CCDC116Q8IYX3 ATF7IP2-201ENST00000324570 3396 ntTSL 5 BASIC5.14□□□□□ -1.59
CCDC116Q8IYX3 RGS17-202ENST00000367225 7773 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
CCDC116Q8IYX3 ADAM29-202ENST00000404450 3171 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
CCDC116Q8IYX3 OR2L3-202ENST00000641161 2830 ntAPPRIS P1 BASIC5.14□□□□□ -1.59
CCDC116Q8IYX3 OR2L3-203ENST00000641649 2846 ntAPPRIS P1 BASIC5.14□□□□□ -1.59
CCDC116Q8IYX3 AC000123.3-201ENST00000624029 4975 ntBASIC5.14□□□□□ -1.59
CCDC116Q8IYX3 EIF3M-208ENST00000531120 5051 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
CCDC116Q8IYX3 RPL34-AS1-202ENST00000507248 3713 ntTSL 2 BASIC5.13□□□□□ -1.59
CCDC116Q8IYX3 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
CCDC116Q8IYX3 PPEF1-201ENST00000349874 2687 ntTSL 5 BASIC5.13□□□□□ -1.59
CCDC116Q8IYX3 BICRAL-201ENST00000314073 6530 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
CCDC116Q8IYX3 SCEL-205ENST00000535157 3096 ntAPPRIS ALT2 TSL 2 BASIC5.13□□□□□ -1.59
CCDC116Q8IYX3 MCM9-209ENST00000619706 4822 ntAPPRIS P1 TSL 5 BASIC5.13□□□□□ -1.59
CCDC116Q8IYX3 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC5.13□□□□□ -1.59
CCDC116Q8IYX3 AC106870.1-201ENST00000359823 200 ntTSL 3 BASIC5.13□□□□□ -1.59
CCDC116Q8IYX3 Y_RNA.217-201ENST00000364214 105 ntBASIC5.13□□□□□ -1.59
CCDC116Q8IYX3 RNU6-153P-201ENST00000364422 104 ntBASIC5.13□□□□□ -1.59
CCDC116Q8IYX3 SNORA16A-201ENST00000384342 137 ntBASIC5.13□□□□□ -1.59
CCDC116Q8IYX3 MIR514A1-201ENST00000385133 98 ntBASIC5.13□□□□□ -1.59
CCDC116Q8IYX3 MIR153-2-201ENST00000385225 87 ntBASIC5.13□□□□□ -1.59
CCDC116Q8IYX3 AC092687.1-201ENST00000418835 389 ntTSL 3 BASIC5.13□□□□□ -1.59
CCDC116Q8IYX3 AC062032.1-201ENST00000436245 355 ntTSL 5 BASIC5.13□□□□□ -1.59
CCDC116Q8IYX3 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
CCDC116Q8IYX3 Y_RNA.641-201ENST00000459414 105 ntBASIC5.13□□□□□ -1.59
CCDC116Q8IYX3 SNORA40.9-201ENST00000515895 93 ntBASIC5.13□□□□□ -1.59
CCDC116Q8IYX3 RNA5SP272-201ENST00000516095 111 ntBASIC5.13□□□□□ -1.59
CCDC116Q8IYX3 AC062004.1-202ENST00000524014 246 ntTSL 5 BASIC5.13□□□□□ -1.59
CCDC116Q8IYX3 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC5.13□□□□□ -1.59
CCDC116Q8IYX3 LINC01835-202ENST00000589345 450 ntTSL 3 BASIC5.13□□□□□ -1.59
CCDC116Q8IYX3 AP000769.2-201ENST00000602344 396 ntBASIC5.13□□□□□ -1.59
CCDC116Q8IYX3 AC005911.1-201ENST00000619883 456 ntTSL 5 BASIC5.13□□□□□ -1.59
CCDC116Q8IYX3 ZNF525-202ENST00000474037 3890 ntAPPRIS P1 TSL 5 BASIC5.13□□□□□ -1.59
CCDC116Q8IYX3 KAT6B-201ENST00000287239 8287 ntAPPRIS P3 TSL 1 (best) BASIC5.13□□□□□ -1.59
CCDC116Q8IYX3 CYP3A7-201ENST00000336374 1971 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
CCDC116Q8IYX3 CARF-208ENST00000428585 2513 ntTSL 2 BASIC5.13□□□□□ -1.59
CCDC116Q8IYX3 GHR-210ENST00000615111 4814 ntAPPRIS P1 TSL 5 BASIC5.12□□□□□ -1.59
CCDC116Q8IYX3 TOPBP1-201ENST00000260810 5378 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
CCDC116Q8IYX3 ZC3H12B-201ENST00000338957 7256 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
CCDC116Q8IYX3 F2RL2-201ENST00000296641 3429 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
CCDC116Q8IYX3 PFKFB2-201ENST00000367079 3494 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
CCDC116Q8IYX3 Y_RNA.230-201ENST00000364348 109 ntBASIC5.12□□□□□ -1.59
CCDC116Q8IYX3 Y_RNA.331-201ENST00000365267 102 ntBASIC5.12□□□□□ -1.59
CCDC116Q8IYX3 SNORA51.8-201ENST00000384234 132 ntBASIC5.12□□□□□ -1.59
CCDC116Q8IYX3 RNU6-166P-201ENST00000384371 107 ntBASIC5.12□□□□□ -1.59
CCDC116Q8IYX3 SNORA40C-201ENST00000391285 128 ntBASIC5.12□□□□□ -1.59
CCDC116Q8IYX3 COX6B1P7-201ENST00000430845 235 ntBASIC5.12□□□□□ -1.59
CCDC116Q8IYX3 AC096638.1-201ENST00000444678 216 ntBASIC5.12□□□□□ -1.59
CCDC116Q8IYX3 RNF219-AS1-202ENST00000444769 590 ntTSL 4 BASIC5.12□□□□□ -1.59
CCDC116Q8IYX3 HMGB3P3-201ENST00000510526 400 ntBASIC5.12□□□□□ -1.59
CCDC116Q8IYX3 SCARNA20.4-201ENST00000516969 131 ntBASIC5.12□□□□□ -1.59
CCDC116Q8IYX3 SNORA31.19-201ENST00000517079 126 ntBASIC5.12□□□□□ -1.59
CCDC116Q8IYX3 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC5.12□□□□□ -1.59
CCDC116Q8IYX3 SMILR-201ENST00000533992 553 ntTSL 4 BASIC5.12□□□□□ -1.59
CCDC116Q8IYX3 MIR4782-201ENST00000577987 79 ntBASIC5.12□□□□□ -1.59
CCDC116Q8IYX3 MIR1273E-201ENST00000581165 102 ntBASIC5.12□□□□□ -1.59
CCDC116Q8IYX3 ERVK-28-203ENST00000600419 457 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
CCDC116Q8IYX3 BPIFA4P-203ENST00000603168 689 ntBASIC5.12□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 121.6 ms