Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 AC024595.1-201ENST00000623088 387 ntBASIC1.62□□□□□ -2.15
USP54Q70EL1 MTND2P41-201ENST00000637599 773 ntBASIC1.62□□□□□ -2.15
USP54Q70EL1 AC008669.1-201ENST00000565823 2178 ntBASIC1.62□□□□□ -2.15
USP54Q70EL1 ZNF732-202ENST00000619749 2179 ntAPPRIS ALT2 TSL 2 BASIC1.62□□□□□ -2.15
USP54Q70EL1 HMGB1P5-201ENST00000255320 642 ntBASIC1.61□□□□□ -2.15
USP54Q70EL1 RNU5D-1-201ENST00000363299 116 ntBASIC1.61□□□□□ -2.15
USP54Q70EL1 RNU6-819P-201ENST00000364116 107 ntBASIC1.61□□□□□ -2.15
USP54Q70EL1 MIR222-201ENST00000384992 110 ntBASIC1.61□□□□□ -2.15
USP54Q70EL1 ZNF90P2-204ENST00000419323 1075 ntBASIC1.61□□□□□ -2.15
USP54Q70EL1 RPL31P63-201ENST00000422565 375 ntBASIC1.61□□□□□ -2.15
USP54Q70EL1 AC007560.1-201ENST00000426912 237 ntBASIC1.61□□□□□ -2.15
USP54Q70EL1 VN1R108P-201ENST00000431580 830 ntBASIC1.61□□□□□ -2.15
USP54Q70EL1 AP000146.1-202ENST00000441666 441 ntTSL 3 BASIC1.61□□□□□ -2.15
USP54Q70EL1 AL078601.1-201ENST00000444542 271 ntBASIC1.61□□□□□ -2.15
USP54Q70EL1 AC064871.1-201ENST00000444562 427 ntTSL 3 BASIC1.61□□□□□ -2.15
USP54Q70EL1 AC104685.1-201ENST00000502445 371 ntBASIC1.61□□□□□ -2.15
USP54Q70EL1 CBX3P3-201ENST00000508108 532 ntBASIC1.61□□□□□ -2.15
USP54Q70EL1 RNU2-44P-201ENST00000516795 194 ntBASIC1.61□□□□□ -2.15
USP54Q70EL1 SNORA31.18-201ENST00000517043 134 ntBASIC1.61□□□□□ -2.15
USP54Q70EL1 AP003110.1-201ENST00000526976 717 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
USP54Q70EL1 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC1.61□□□□□ -2.15
USP54Q70EL1 RPS15AP11-201ENST00000594193 385 ntBASIC1.61□□□□□ -2.15
USP54Q70EL1 AC097468.3-201ENST00000607956 456 ntBASIC1.61□□□□□ -2.15
USP54Q70EL1 SMIM18-202ENST00000626298 114 ntTSL 5 BASIC1.61□□□□□ -2.15
USP54Q70EL1 AC016716.1-201ENST00000265882 708 ntBASIC1.61□□□□□ -2.15
USP54Q70EL1 SNORA38-201ENST00000363946 132 ntBASIC1.61□□□□□ -2.15
USP54Q70EL1 STAT4-203ENST00000409995 709 ntTSL 5 BASIC1.61□□□□□ -2.15
USP54Q70EL1 FABP5P3-201ENST00000437960 408 ntBASIC1.61□□□□□ -2.15
USP54Q70EL1 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC1.61□□□□□ -2.15
USP54Q70EL1 HMGN3P1-201ENST00000453847 193 ntBASIC1.61□□□□□ -2.15
USP54Q70EL1 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC1.61□□□□□ -2.15
USP54Q70EL1 OR52A4P-202ENST00000481634 799 ntBASIC1.61□□□□□ -2.15
USP54Q70EL1 RNU4ATAC10P-201ENST00000516967 122 ntBASIC1.61□□□□□ -2.15
USP54Q70EL1 PTK2-220ENST00000520151 573 ntTSL 4 BASIC1.61□□□□□ -2.15
USP54Q70EL1 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC1.61□□□□□ -2.15
USP54Q70EL1 AC079411.1-201ENST00000565441 795 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
USP54Q70EL1 AC023824.2-201ENST00000566185 400 ntBASIC1.61□□□□□ -2.15
USP54Q70EL1 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC1.61□□□□□ -2.15
USP54Q70EL1 AC245884.12-201ENST00000615364 59 ntBASIC1.61□□□□□ -2.15
USP54Q70EL1 AC006338.1-201ENST00000618453 749 ntBASIC1.61□□□□□ -2.15
USP54Q70EL1 UCA1.1-201ENST00000620952 75 ntBASIC1.61□□□□□ -2.15
USP54Q70EL1 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC1.61□□□□□ -2.15
USP54Q70EL1 AC009812.4-201ENST00000569134 1805 ntBASIC1.61□□□□□ -2.15
USP54Q70EL1 SAMSN1-202ENST00000400564 1382 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
USP54Q70EL1 AKAP14-201ENST00000334356 608 ntAPPRIS ALT2 TSL 5 BASIC1.6□□□□□ -2.15
USP54Q70EL1 RNU6-374P-201ENST00000364146 108 ntBASIC1.6□□□□□ -2.15
USP54Q70EL1 SNORA68.1-201ENST00000364537 132 ntBASIC1.6□□□□□ -2.15
USP54Q70EL1 MIR524-201ENST00000385242 87 ntBASIC1.6□□□□□ -2.15
USP54Q70EL1 MIR493-201ENST00000385254 89 ntBASIC1.6□□□□□ -2.15
USP54Q70EL1 RNU6-821P-201ENST00000390995 107 ntBASIC1.6□□□□□ -2.15
USP54Q70EL1 SSXP10-201ENST00000402595 565 ntBASIC1.6□□□□□ -2.15
USP54Q70EL1 POLR2J4-204ENST00000418424 324 ntBASIC1.6□□□□□ -2.15
USP54Q70EL1 MTND2P29-201ENST00000438595 412 ntBASIC1.6□□□□□ -2.15
USP54Q70EL1 ATG12P2-201ENST00000456830 416 ntBASIC1.6□□□□□ -2.15
USP54Q70EL1 RPS27P26-201ENST00000494583 239 ntBASIC1.6□□□□□ -2.15
USP54Q70EL1 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC1.6□□□□□ -2.15
USP54Q70EL1 HMGB3P17-201ENST00000504195 649 ntBASIC1.6□□□□□ -2.15
USP54Q70EL1 SNORA70.16-201ENST00000516390 95 ntBASIC1.6□□□□□ -2.15
USP54Q70EL1 AL391597.1-201ENST00000618707 694 ntBASIC1.6□□□□□ -2.15
USP54Q70EL1 AC027309.3-201ENST00000623419 351 ntBASIC1.6□□□□□ -2.15
USP54Q70EL1 RNU6-730P-201ENST00000383954 104 ntBASIC1.59□□□□□ -2.15
USP54Q70EL1 AL590432.1-201ENST00000420071 566 ntTSL 2 BASIC1.59□□□□□ -2.15
USP54Q70EL1 ARL2BPP3-201ENST00000421226 480 ntBASIC1.59□□□□□ -2.15
USP54Q70EL1 RPL36P19-201ENST00000430744 301 ntBASIC1.59□□□□□ -2.15
USP54Q70EL1 MTND4LP10-201ENST00000435146 291 ntBASIC1.59□□□□□ -2.15
USP54Q70EL1 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC1.59□□□□□ -2.15
USP54Q70EL1 AL359385.1-201ENST00000456509 365 ntBASIC1.59□□□□□ -2.15
USP54Q70EL1 snoU109.4-201ENST00000458953 143 ntBASIC1.59□□□□□ -2.15
USP54Q70EL1 AC025768.1-201ENST00000510057 267 ntBASIC1.59□□□□□ -2.15
USP54Q70EL1 AC011405.1-201ENST00000514207 248 ntTSL 3 BASIC1.59□□□□□ -2.15
USP54Q70EL1 AP000907.2-201ENST00000530827 353 ntBASIC1.59□□□□□ -2.15
USP54Q70EL1 LINC02274-201ENST00000555539 1174 ntTSL 1 (best) BASIC1.59□□□□□ -2.15
USP54Q70EL1 JKAMP-212ENST00000556985 592 ntTSL 2 BASIC1.59□□□□□ -2.15
USP54Q70EL1 PSMA4-206ENST00000558341 719 ntTSL 5 BASIC1.59□□□□□ -2.15
USP54Q70EL1 AC012404.1-201ENST00000560876 476 ntTSL 3 BASIC1.59□□□□□ -2.15
USP54Q70EL1 AC090912.2-203ENST00000581177 477 ntTSL 3 BASIC1.59□□□□□ -2.15
USP54Q70EL1 AC018618.2-201ENST00000604770 446 ntBASIC1.59□□□□□ -2.15
USP54Q70EL1 AC011374.2-201ENST00000607135 526 ntBASIC1.59□□□□□ -2.15
USP54Q70EL1 MIR758-201ENST00000390227 88 ntBASIC1.58□□□□□ -2.16
USP54Q70EL1 RPL7P27-201ENST00000403775 720 ntBASIC1.58□□□□□ -2.16
USP54Q70EL1 PGBD4P6-201ENST00000421501 610 ntBASIC1.58□□□□□ -2.16
USP54Q70EL1 TH2LCRR-202ENST00000435042 472 ntTSL 5 BASIC1.58□□□□□ -2.16
USP54Q70EL1 RNU6-420P-201ENST00000458780 107 ntBASIC1.58□□□□□ -2.16
USP54Q70EL1 RPL31P41-201ENST00000477967 372 ntBASIC1.58□□□□□ -2.16
USP54Q70EL1 AC024579.1-201ENST00000503685 371 ntTSL 5 BASIC1.58□□□□□ -2.16
USP54Q70EL1 OTUD4-208ENST00000509620 864 ntTSL 1 (best) BASIC1.58□□□□□ -2.16
USP54Q70EL1 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC1.58□□□□□ -2.16
USP54Q70EL1 FABP5P5-201ENST00000515537 406 ntBASIC1.58□□□□□ -2.16
USP54Q70EL1 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC1.58□□□□□ -2.16
USP54Q70EL1 AC090739.1-201ENST00000522190 708 ntTSL 3 BASIC1.58□□□□□ -2.16
USP54Q70EL1 CASP1P1-201ENST00000526345 212 ntBASIC1.58□□□□□ -2.16
USP54Q70EL1 AP003730.2-201ENST00000526385 546 ntTSL 3 BASIC1.58□□□□□ -2.16
USP54Q70EL1 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC1.58□□□□□ -2.16
USP54Q70EL1 AC009127.3-201ENST00000570531 403 ntBASIC1.58□□□□□ -2.16
USP54Q70EL1 MIR4285-201ENST00000581001 85 ntBASIC1.58□□□□□ -2.16
USP54Q70EL1 AC009090.3-201ENST00000616553 565 ntBASIC1.58□□□□□ -2.16
USP54Q70EL1 U6.107-201ENST00000637108 79 ntBASIC1.58□□□□□ -2.16
USP54Q70EL1 CR848007.1-201ENST00000442354 1699 ntBASIC1.58□□□□□ -2.16
USP54Q70EL1 MTND4P27-201ENST00000450813 1354 ntBASIC1.58□□□□□ -2.16
USP54Q70EL1 NUCB2-220ENST00000622082 1369 ntAPPRIS P2 TSL 5 BASIC1.58□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 101.6 ms