Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 CCDC34P1-201ENST00000507441 517 ntBASIC3.89□□□□□ -1.79
COL4A3Q01955 AC079140.5-201ENST00000507882 310 ntBASIC3.89□□□□□ -1.79
COL4A3Q01955 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC3.89□□□□□ -1.79
COL4A3Q01955 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC3.89□□□□□ -1.79
COL4A3Q01955 AC008011.1-201ENST00000545989 227 ntBASIC3.89□□□□□ -1.79
COL4A3Q01955 OR11H5P-201ENST00000554039 926 ntBASIC3.89□□□□□ -1.79
COL4A3Q01955 HMGN2P47-201ENST00000559378 272 ntBASIC3.89□□□□□ -1.79
COL4A3Q01955 AC023043.2-201ENST00000589678 1026 ntBASIC3.89□□□□□ -1.79
COL4A3Q01955 AC123786.2-201ENST00000603459 275 ntBASIC3.89□□□□□ -1.79
COL4A3Q01955 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC3.89□□□□□ -1.79
COL4A3Q01955 AC092747.3-201ENST00000603769 301 ntBASIC3.89□□□□□ -1.79
COL4A3Q01955 AC104763.2-201ENST00000604179 382 ntBASIC3.89□□□□□ -1.79
COL4A3Q01955 AC010680.4-201ENST00000605334 543 ntBASIC3.89□□□□□ -1.79
COL4A3Q01955 AC116447.1-201ENST00000613153 453 ntBASIC3.89□□□□□ -1.79
COL4A3Q01955 U4.1-201ENST00000620349 87 ntBASIC3.89□□□□□ -1.79
COL4A3Q01955 SMG1P4-204ENST00000523028 4131 ntBASIC3.89□□□□□ -1.79
COL4A3Q01955 STON1-201ENST00000404752 5511 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
COL4A3Q01955 KMO-202ENST00000366557 4888 ntAPPRIS ALT2 TSL 5 BASIC3.89□□□□□ -1.79
COL4A3Q01955 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC3.89□□□□□ -1.79
COL4A3Q01955 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC3.89□□□□□ -1.79
COL4A3Q01955 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC3.89□□□□□ -1.79
COL4A3Q01955 ADNP-201ENST00000349014 5963 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
COL4A3Q01955 C8orf34-203ENST00000348340 3571 ntAPPRIS ALT2 TSL 1 (best) BASIC3.88□□□□□ -1.79
COL4A3Q01955 Y_RNA.193-201ENST00000363979 102 ntBASIC3.88□□□□□ -1.79
COL4A3Q01955 Y_RNA.212-201ENST00000364177 102 ntBASIC3.88□□□□□ -1.79
COL4A3Q01955 MIR450B-201ENST00000401182 78 ntBASIC3.88□□□□□ -1.79
COL4A3Q01955 MRPL42P3-201ENST00000401492 326 ntBASIC3.88□□□□□ -1.79
COL4A3Q01955 AL136372.1-201ENST00000403060 228 ntBASIC3.88□□□□□ -1.79
COL4A3Q01955 RN7SKP58-201ENST00000411010 305 ntBASIC3.88□□□□□ -1.79
COL4A3Q01955 RNU6-954P-201ENST00000411355 107 ntBASIC3.88□□□□□ -1.79
COL4A3Q01955 RNA5SP107-201ENST00000411358 122 ntBASIC3.88□□□□□ -1.79
COL4A3Q01955 RPL30P2-201ENST00000414021 291 ntBASIC3.88□□□□□ -1.79
COL4A3Q01955 NUP35P1-201ENST00000422734 947 ntBASIC3.88□□□□□ -1.79
COL4A3Q01955 MTCYBP10-201ENST00000424905 650 ntBASIC3.88□□□□□ -1.79
COL4A3Q01955 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC3.88□□□□□ -1.79
COL4A3Q01955 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC3.88□□□□□ -1.79
COL4A3Q01955 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC3.88□□□□□ -1.79
COL4A3Q01955 SCARNA18-201ENST00000459004 134 ntBASIC3.88□□□□□ -1.79
COL4A3Q01955 AC084198.1-201ENST00000477747 402 ntBASIC3.88□□□□□ -1.79
COL4A3Q01955 ABI3BP-215ENST00000495063 3714 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
COL4A3Q01955 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC3.88□□□□□ -1.79
COL4A3Q01955 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
COL4A3Q01955 HMGN1P11-201ENST00000508668 303 ntBASIC3.88□□□□□ -1.79
COL4A3Q01955 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC3.88□□□□□ -1.79
COL4A3Q01955 SNORA25.10-201ENST00000515926 124 ntBASIC3.88□□□□□ -1.79
COL4A3Q01955 RNU6-976P-201ENST00000516086 111 ntBASIC3.88□□□□□ -1.79
COL4A3Q01955 IGKV2-38-201ENST00000517443 247 ntBASIC3.88□□□□□ -1.79
COL4A3Q01955 PTP4A1P6-201ENST00000531034 478 ntBASIC3.88□□□□□ -1.79
COL4A3Q01955 AC023442.1-201ENST00000531247 422 ntBASIC3.88□□□□□ -1.79
COL4A3Q01955 MGA-202ENST00000545763 11413 ntAPPRIS ALT2 TSL 5 BASIC3.88□□□□□ -1.79
COL4A3Q01955 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC3.88□□□□□ -1.79
COL4A3Q01955 AC138761.3-201ENST00000579993 334 ntBASIC3.88□□□□□ -1.79
COL4A3Q01955 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC3.88□□□□□ -1.79
COL4A3Q01955 AC012603.1-201ENST00000606424 528 ntBASIC3.88□□□□□ -1.79
COL4A3Q01955 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC3.88□□□□□ -1.79
COL4A3Q01955 AC092435.4-201ENST00000623012 4159 ntBASIC3.88□□□□□ -1.79
COL4A3Q01955 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC3.88□□□□□ -1.79
COL4A3Q01955 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC3.88□□□□□ -1.79
COL4A3Q01955 SCN1A-209ENST00000635750 8299 ntAPPRIS P3 TSL 5 BASIC3.88□□□□□ -1.79
COL4A3Q01955 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC3.88□□□□□ -1.79
COL4A3Q01955 AL445437.1-201ENST00000623157 3087 ntBASIC3.88□□□□□ -1.79
COL4A3Q01955 DOCK9-207ENST00000442173 7643 ntAPPRIS ALT2 TSL 5 BASIC3.88□□□□□ -1.79
COL4A3Q01955 API5P2-201ENST00000397055 1498 ntBASIC3.88□□□□□ -1.79
COL4A3Q01955 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC3.87□□□□□ -1.79
COL4A3Q01955 Y_RNA.5-201ENST00000362334 102 ntBASIC3.87□□□□□ -1.79
COL4A3Q01955 Y_RNA.135-201ENST00000363439 95 ntBASIC3.87□□□□□ -1.79
COL4A3Q01955 RNU6-188P-201ENST00000364207 107 ntBASIC3.87□□□□□ -1.79
COL4A3Q01955 RNU6-1032P-201ENST00000384100 107 ntBASIC3.87□□□□□ -1.79
COL4A3Q01955 RNU6-432P-201ENST00000384196 109 ntBASIC3.87□□□□□ -1.79
COL4A3Q01955 UBE2V1P2-201ENST00000397758 440 ntBASIC3.87□□□□□ -1.79
COL4A3Q01955 AL391417.1-201ENST00000404100 426 ntBASIC3.87□□□□□ -1.79
COL4A3Q01955 SNORA3C-201ENST00000408792 125 ntBASIC3.87□□□□□ -1.79
COL4A3Q01955 RNU2-36P-201ENST00000410361 191 ntBASIC3.87□□□□□ -1.79
COL4A3Q01955 RNU2-21P-201ENST00000410368 188 ntBASIC3.87□□□□□ -1.79
COL4A3Q01955 RNU6-516P-201ENST00000411381 104 ntBASIC3.87□□□□□ -1.79
COL4A3Q01955 AC009310.1-201ENST00000414414 451 ntBASIC3.87□□□□□ -1.79
COL4A3Q01955 SKA2P1-201ENST00000425592 390 ntBASIC3.87□□□□□ -1.79
COL4A3Q01955 RPL36AP6-201ENST00000435770 321 ntBASIC3.87□□□□□ -1.79
COL4A3Q01955 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
COL4A3Q01955 AC104058.1-201ENST00000448028 297 ntBASIC3.87□□□□□ -1.79
COL4A3Q01955 AL162388.1-201ENST00000450912 352 ntBASIC3.87□□□□□ -1.79
COL4A3Q01955 DCLRE1CP1-201ENST00000454630 470 ntBASIC3.87□□□□□ -1.79
COL4A3Q01955 HMGB1P21-201ENST00000502313 581 ntBASIC3.87□□□□□ -1.79
COL4A3Q01955 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC3.87□□□□□ -1.79
COL4A3Q01955 RNU4ATAC7P-201ENST00000516280 125 ntBASIC3.87□□□□□ -1.79
COL4A3Q01955 RNU6-764P-201ENST00000516396 105 ntBASIC3.87□□□□□ -1.79
COL4A3Q01955 RNU6-64P-201ENST00000517119 105 ntBASIC3.87□□□□□ -1.79
COL4A3Q01955 ZNF84-212ENST00000542874 540 ntTSL 5 BASIC3.87□□□□□ -1.79
COL4A3Q01955 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC3.87□□□□□ -1.79
COL4A3Q01955 AP001120.2-201ENST00000589395 296 ntTSL 3 BASIC3.87□□□□□ -1.79
COL4A3Q01955 AC136601.2-201ENST00000604356 474 ntBASIC3.87□□□□□ -1.79
COL4A3Q01955 DUSP12P1-201ENST00000612874 516 ntBASIC3.87□□□□□ -1.79
COL4A3Q01955 AL591424.2-201ENST00000617023 128 ntBASIC3.87□□□□□ -1.79
COL4A3Q01955 AC007792.1-201ENST00000623023 402 ntBASIC3.87□□□□□ -1.79
COL4A3Q01955 AC022418.1-201ENST00000624118 445 ntBASIC3.87□□□□□ -1.79
COL4A3Q01955 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
COL4A3Q01955 ZNF826P-207ENST00000622273 1910 ntBASIC3.87□□□□□ -1.79
COL4A3Q01955 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
COL4A3Q01955 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC3.87□□□□□ -1.79
COL4A3Q01955 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC3.87□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 108.7 ms