Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 RNU6-27P-201ENST00000516146 107 ntBASIC1.22□□□□□ -2.21
ABCA4P78363 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC1.22□□□□□ -2.21
ABCA4P78363 SPIC-201ENST00000551346 1132 ntAPPRIS P1 TSL 1 (best) BASIC1.22□□□□□ -2.21
ABCA4P78363 AC097504.2-201ENST00000608088 454 ntBASIC1.22□□□□□ -2.21
ABCA4P78363 AP000238.1-201ENST00000608759 426 ntBASIC1.22□□□□□ -2.21
ABCA4P78363 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC1.22□□□□□ -2.21
ABCA4P78363 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.22□□□□□ -2.21
ABCA4P78363 MTND4P27-201ENST00000450813 1354 ntBASIC1.22□□□□□ -2.21
ABCA4P78363 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.22□□□□□ -2.21
ABCA4P78363 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC1.22□□□□□ -2.21
ABCA4P78363 SNORD82-201ENST00000365530 70 ntBASIC1.22□□□□□ -2.21
ABCA4P78363 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC1.22□□□□□ -2.21
ABCA4P78363 RNU6-1083P-201ENST00000384022 107 ntBASIC1.22□□□□□ -2.21
ABCA4P78363 RNU6-1151P-201ENST00000384684 107 ntBASIC1.22□□□□□ -2.21
ABCA4P78363 FGF12-AS1-201ENST00000414920 580 ntTSL 4 BASIC1.22□□□□□ -2.21
ABCA4P78363 RPS6P15-201ENST00000431996 751 ntBASIC1.22□□□□□ -2.21
ABCA4P78363 IFNA20P-201ENST00000436840 528 ntBASIC1.22□□□□□ -2.21
ABCA4P78363 AC068135.1-201ENST00000446164 246 ntBASIC1.22□□□□□ -2.21
ABCA4P78363 AC097521.1-201ENST00000505488 567 ntTSL 3 BASIC1.22□□□□□ -2.21
ABCA4P78363 RNU6-488P-201ENST00000515918 99 ntBASIC1.22□□□□□ -2.21
ABCA4P78363 RNU6-1095P-201ENST00000516148 108 ntBASIC1.22□□□□□ -2.21
ABCA4P78363 SCARNA11.3-201ENST00000517276 130 ntBASIC1.22□□□□□ -2.21
ABCA4P78363 IGHVII-53-1-201ENST00000519538 255 ntBASIC1.22□□□□□ -2.21
ABCA4P78363 LINC00933-203ENST00000559812 219 ntBASIC1.22□□□□□ -2.21
ABCA4P78363 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC1.22□□□□□ -2.21
ABCA4P78363 AC107214.2-201ENST00000608204 634 ntBASIC1.22□□□□□ -2.21
ABCA4P78363 HMGB1P24-202ENST00000615653 685 ntBASIC1.22□□□□□ -2.21
ABCA4P78363 CCDC68-201ENST00000337363 1457 ntAPPRIS P1 TSL 2 BASIC1.22□□□□□ -2.21
ABCA4P78363 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC1.21□□□□□ -2.22
ABCA4P78363 AL022578.1-201ENST00000439330 1433 ntBASIC1.21□□□□□ -2.22
ABCA4P78363 RNU6-339P-201ENST00000384310 107 ntBASIC1.21□□□□□ -2.22
ABCA4P78363 AL355497.1-201ENST00000406262 551 ntBASIC1.21□□□□□ -2.22
ABCA4P78363 MOB4-205ENST00000409916 829 ntTSL 3 BASIC1.21□□□□□ -2.22
ABCA4P78363 AP000550.2-201ENST00000417463 774 ntTSL 5 BASIC1.21□□□□□ -2.22
ABCA4P78363 AL022400.1-201ENST00000423946 935 ntBASIC1.21□□□□□ -2.22
ABCA4P78363 AC079780.1-201ENST00000428259 207 ntBASIC1.21□□□□□ -2.22
ABCA4P78363 AP000552.3-201ENST00000434730 775 ntTSL 5 BASIC1.21□□□□□ -2.22
ABCA4P78363 AL360221.1-201ENST00000445989 335 ntBASIC1.21□□□□□ -2.22
ABCA4P78363 AL500527.1-201ENST00000448532 255 ntBASIC1.21□□□□□ -2.22
ABCA4P78363 VPS26AP1-201ENST00000483197 979 ntBASIC1.21□□□□□ -2.22
ABCA4P78363 AC104108.1-201ENST00000509930 412 ntBASIC1.21□□□□□ -2.22
ABCA4P78363 AC093281.2-201ENST00000510153 597 ntBASIC1.21□□□□□ -2.22
ABCA4P78363 AC008676.3-201ENST00000521237 435 ntBASIC1.21□□□□□ -2.22
ABCA4P78363 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC1.21□□□□□ -2.22
ABCA4P78363 AC139103.1-201ENST00000534696 1030 ntBASIC1.21□□□□□ -2.22
ABCA4P78363 AC084364.2-201ENST00000546924 395 ntBASIC1.21□□□□□ -2.22
ABCA4P78363 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC1.21□□□□□ -2.22
ABCA4P78363 CYP3A137P-201ENST00000562436 69 ntBASIC1.21□□□□□ -2.22
ABCA4P78363 AC004775.1-201ENST00000607389 753 ntBASIC1.21□□□□□ -2.22
ABCA4P78363 AC097468.3-201ENST00000607956 456 ntBASIC1.21□□□□□ -2.22
ABCA4P78363 AC006338.1-201ENST00000618453 749 ntBASIC1.21□□□□□ -2.22
ABCA4P78363 PVT1_3.1-201ENST00000620853 95 ntBASIC1.21□□□□□ -2.22
ABCA4P78363 AC110491.2-201ENST00000624061 646 ntTSL 5 BASIC1.21□□□□□ -2.22
ABCA4P78363 AC103710.2-202ENST00000641454 2853 ntBASIC1.21□□□□□ -2.22
ABCA4P78363 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC1.21□□□□□ -2.22
ABCA4P78363 ZBTB8OSP1-201ENST00000342688 498 ntBASIC1.2□□□□□ -2.22
ABCA4P78363 SNORD48-201ENST00000364953 64 ntBASIC1.2□□□□□ -2.22
ABCA4P78363 CNIH4-201ENST00000366856 808 ntAPPRIS ALT1 TSL 2 BASIC1.2□□□□□ -2.22
ABCA4P78363 ZNF92P1Y-201ENST00000415010 1191 ntBASIC1.2□□□□□ -2.22
ABCA4P78363 AL591704.1-201ENST00000432574 275 ntBASIC1.2□□□□□ -2.22
ABCA4P78363 CALM1P1-201ENST00000442082 433 ntBASIC1.2□□□□□ -2.22
ABCA4P78363 KATNBL1P3-201ENST00000443475 909 ntBASIC1.2□□□□□ -2.22
ABCA4P78363 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC1.2□□□□□ -2.22
ABCA4P78363 AC107626.1-201ENST00000471084 183 ntBASIC1.2□□□□□ -2.22
ABCA4P78363 AC022447.3-201ENST00000506865 495 ntBASIC1.2□□□□□ -2.22
ABCA4P78363 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC1.2□□□□□ -2.22
ABCA4P78363 NDUFS5P6-201ENST00000529136 295 ntBASIC1.2□□□□□ -2.22
ABCA4P78363 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC1.2□□□□□ -2.22
ABCA4P78363 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC1.2□□□□□ -2.22
ABCA4P78363 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC1.2□□□□□ -2.22
ABCA4P78363 AP002826.1-201ENST00000608835 315 ntBASIC1.2□□□□□ -2.22
ABCA4P78363 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC1.2□□□□□ -2.22
ABCA4P78363 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC1.2□□□□□ -2.22
ABCA4P78363 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC1.2□□□□□ -2.22
ABCA4P78363 MTCO1P4-201ENST00000520516 1409 ntBASIC1.2□□□□□ -2.22
ABCA4P78363 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC1.2□□□□□ -2.22
ABCA4P78363 TMEM161B-210ENST00000511218 1351 ntTSL 2 BASIC1.2□□□□□ -2.22
ABCA4P78363 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC1.2□□□□□ -2.22
ABCA4P78363 CIR1P3-201ENST00000405137 479 ntBASIC1.2□□□□□ -2.22
ABCA4P78363 AL445183.3-201ENST00000414168 502 ntBASIC1.2□□□□□ -2.22
ABCA4P78363 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC1.2□□□□□ -2.22
ABCA4P78363 AL589880.1-201ENST00000448271 287 ntBASIC1.2□□□□□ -2.22
ABCA4P78363 RPS29P29-201ENST00000456396 171 ntBASIC1.2□□□□□ -2.22
ABCA4P78363 RNU6-420P-201ENST00000458780 107 ntBASIC1.2□□□□□ -2.22
ABCA4P78363 AC097535.1-201ENST00000515263 332 ntTSL 3 BASIC1.2□□□□□ -2.22
ABCA4P78363 RNU2-19P-201ENST00000517288 84 ntBASIC1.2□□□□□ -2.22
ABCA4P78363 HAUS1P3-201ENST00000523909 662 ntBASIC1.2□□□□□ -2.22
ABCA4P78363 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC1.2□□□□□ -2.22
ABCA4P78363 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC1.2□□□□□ -2.22
ABCA4P78363 AC011260.1-201ENST00000578420 472 ntBASIC1.2□□□□□ -2.22
ABCA4P78363 PRKCQ-AS1-213ENST00000613985 883 ntTSL 5 BASIC1.2□□□□□ -2.22
ABCA4P78363 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC1.2□□□□□ -2.22
ABCA4P78363 RNU6-989P-201ENST00000362756 107 ntBASIC1.19□□□□□ -2.22
ABCA4P78363 SPINK9-201ENST00000377906 453 ntAPPRIS P2 TSL 1 (best) BASIC1.19□□□□□ -2.22
ABCA4P78363 AL354733.1-204ENST00000412069 424 ntTSL 5 BASIC1.19□□□□□ -2.22
ABCA4P78363 RPS12P24-201ENST00000412619 387 ntBASIC1.19□□□□□ -2.22
ABCA4P78363 AC092155.2-201ENST00000454675 477 ntBASIC1.19□□□□□ -2.22
ABCA4P78363 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC1.19□□□□□ -2.22
ABCA4P78363 AC104164.3-201ENST00000467363 1258 ntBASIC1.19□□□□□ -2.22
ABCA4P78363 MTND4LP3-201ENST00000468320 276 ntBASIC1.19□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 117.6 ms