Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 RNU1-75P-201ENST00000347264 129 ntBASIC3.62□□□□□ -1.83
CTCFP49711 RNU6-223P-201ENST00000362830 107 ntBASIC3.62□□□□□ -1.83
CTCFP49711 Y_RNA.226-201ENST00000364337 114 ntBASIC3.62□□□□□ -1.83
CTCFP49711 RNU6-297P-201ENST00000384636 107 ntBASIC3.62□□□□□ -1.83
CTCFP49711 RNU6-1077P-201ENST00000410506 102 ntBASIC3.62□□□□□ -1.83
CTCFP49711 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC3.62□□□□□ -1.83
CTCFP49711 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC3.62□□□□□ -1.83
CTCFP49711 AL138830.1-201ENST00000435802 402 ntTSL 3 BASIC3.62□□□□□ -1.83
CTCFP49711 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC3.62□□□□□ -1.83
CTCFP49711 AL031667.1-201ENST00000440222 725 ntBASIC3.62□□□□□ -1.83
CTCFP49711 AL357552.1-201ENST00000445254 415 ntBASIC3.62□□□□□ -1.83
CTCFP49711 AC125238.1-201ENST00000448842 249 ntBASIC3.62□□□□□ -1.83
CTCFP49711 AC093392.2-201ENST00000450682 337 ntBASIC3.62□□□□□ -1.83
CTCFP49711 HMGN2P13-201ENST00000476476 274 ntBASIC3.62□□□□□ -1.83
CTCFP49711 RNU6-711P-201ENST00000517255 106 ntBASIC3.62□□□□□ -1.83
CTCFP49711 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC3.62□□□□□ -1.83
CTCFP49711 AC068993.2-201ENST00000546563 395 ntTSL 5 BASIC3.62□□□□□ -1.83
CTCFP49711 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC3.62□□□□□ -1.83
CTCFP49711 NDUFAF4P1-201ENST00000559425 519 ntBASIC3.62□□□□□ -1.83
CTCFP49711 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC3.62□□□□□ -1.83
CTCFP49711 MIR3921-201ENST00000577308 85 ntBASIC3.62□□□□□ -1.83
CTCFP49711 AC012593.1-213ENST00000587255 510 ntTSL 5 BASIC3.62□□□□□ -1.83
CTCFP49711 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC3.62□□□□□ -1.83
CTCFP49711 BX664608.1-201ENST00000610519 487 ntBASIC3.62□□□□□ -1.83
CTCFP49711 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC3.62□□□□□ -1.83
CTCFP49711 AC068831.7-201ENST00000616954 363 ntBASIC3.62□□□□□ -1.83
CTCFP49711 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC3.62□□□□□ -1.83
CTCFP49711 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC3.62□□□□□ -1.83
CTCFP49711 AC090582.1-201ENST00000636321 199 ntBASIC3.62□□□□□ -1.83
CTCFP49711 MIR4275-201ENST00000636486 87 ntBASIC3.62□□□□□ -1.83
CTCFP49711 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC3.62□□□□□ -1.83
CTCFP49711 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC3.62□□□□□ -1.83
CTCFP49711 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC3.61□□□□□ -1.83
CTCFP49711 AC103988.1-201ENST00000566382 2177 ntBASIC3.61□□□□□ -1.83
CTCFP49711 AC004972.1-201ENST00000623934 2209 ntBASIC3.61□□□□□ -1.83
CTCFP49711 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
CTCFP49711 MIR30E-201ENST00000362104 92 ntBASIC3.61□□□□□ -1.83
CTCFP49711 Y_RNA.4-201ENST00000362333 112 ntBASIC3.61□□□□□ -1.83
CTCFP49711 SNORA1.3-201ENST00000384676 136 ntBASIC3.61□□□□□ -1.83
CTCFP49711 SNORD15B-201ENST00000384714 146 ntBASIC3.61□□□□□ -1.83
CTCFP49711 MIR764-201ENST00000390811 85 ntBASIC3.61□□□□□ -1.83
CTCFP49711 SNORA40.3-201ENST00000390964 122 ntBASIC3.61□□□□□ -1.83
CTCFP49711 FCF1P10-201ENST00000407590 479 ntBASIC3.61□□□□□ -1.83
CTCFP49711 MIR1290-201ENST00000408735 78 ntBASIC3.61□□□□□ -1.83
CTCFP49711 RNU6-248P-201ENST00000410720 107 ntBASIC3.61□□□□□ -1.83
CTCFP49711 BTF3L4P1-201ENST00000413813 468 ntBASIC3.61□□□□□ -1.83
CTCFP49711 UBE2FP1-201ENST00000416536 447 ntBASIC3.61□□□□□ -1.83
CTCFP49711 AC016907.1-201ENST00000419483 435 ntBASIC3.61□□□□□ -1.83
CTCFP49711 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC3.61□□□□□ -1.83
CTCFP49711 UBE2D3P2-201ENST00000424409 445 ntBASIC3.61□□□□□ -1.83
CTCFP49711 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC3.61□□□□□ -1.83
CTCFP49711 AC005094.1-201ENST00000440420 368 ntBASIC3.61□□□□□ -1.83
CTCFP49711 MTND6P13-201ENST00000443510 523 ntBASIC3.61□□□□□ -1.83
CTCFP49711 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC3.61□□□□□ -1.83
CTCFP49711 SSXP1-201ENST00000453640 473 ntBASIC3.61□□□□□ -1.83
CTCFP49711 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC3.61□□□□□ -1.83
CTCFP49711 MTCO2P18-201ENST00000457151 658 ntBASIC3.61□□□□□ -1.83
CTCFP49711 RPS4XP2-201ENST00000458402 793 ntBASIC3.61□□□□□ -1.83
CTCFP49711 RPS26P21-201ENST00000475397 348 ntBASIC3.61□□□□□ -1.83
CTCFP49711 AC006483.1-201ENST00000487308 313 ntBASIC3.61□□□□□ -1.83
CTCFP49711 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
CTCFP49711 DEFB108A-201ENST00000530110 222 ntBASIC3.61□□□□□ -1.83
CTCFP49711 AP000790.2-201ENST00000534388 522 ntTSL 3 BASIC3.61□□□□□ -1.83
CTCFP49711 AC087260.1-201ENST00000546118 401 ntTSL 5 BASIC3.61□□□□□ -1.83
CTCFP49711 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC3.61□□□□□ -1.83
CTCFP49711 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC3.61□□□□□ -1.83
CTCFP49711 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC3.61□□□□□ -1.83
CTCFP49711 AC106900.2-201ENST00000604994 317 ntBASIC3.61□□□□□ -1.83
CTCFP49711 AC121334.2-201ENST00000605387 271 ntBASIC3.61□□□□□ -1.83
CTCFP49711 RNU6-87P-201ENST00000607561 108 ntBASIC3.61□□□□□ -1.83
CTCFP49711 AC009570.1-201ENST00000609599 745 ntBASIC3.61□□□□□ -1.83
CTCFP49711 AC131902.3-201ENST00000611767 581 ntBASIC3.61□□□□□ -1.83
CTCFP49711 C8orf59-207ENST00000611854 563 ntAPPRIS P1 TSL 2 BASIC3.61□□□□□ -1.83
CTCFP49711 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC3.61□□□□□ -1.83
CTCFP49711 AC108479.2-201ENST00000617314 601 ntBASIC3.61□□□□□ -1.83
CTCFP49711 AC002076.2-201ENST00000617362 122 ntBASIC3.61□□□□□ -1.83
CTCFP49711 AC009509.4-201ENST00000619202 509 ntBASIC3.61□□□□□ -1.83
CTCFP49711 TEX21P-201ENST00000447107 1476 ntBASIC3.6□□□□□ -1.83
CTCFP49711 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.6□□□□□ -1.83
CTCFP49711 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC3.6□□□□□ -1.83
CTCFP49711 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC3.6□□□□□ -1.83
CTCFP49711 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC3.6□□□□□ -1.83
CTCFP49711 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
CTCFP49711 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC3.6□□□□□ -1.83
CTCFP49711 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
CTCFP49711 RNU4-1-201ENST00000363925 141 ntBASIC3.6□□□□□ -1.83
CTCFP49711 Y_RNA.201-201ENST00000364052 96 ntBASIC3.6□□□□□ -1.83
CTCFP49711 RNY4P16-201ENST00000364768 94 ntBASIC3.6□□□□□ -1.83
CTCFP49711 PTPRC-202ENST00000367364 1017 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
CTCFP49711 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC3.6□□□□□ -1.83
CTCFP49711 RNU1-39P-201ENST00000383897 165 ntBASIC3.6□□□□□ -1.83
CTCFP49711 SNORA75-201ENST00000384158 137 ntBASIC3.6□□□□□ -1.83
CTCFP49711 U3.42-201ENST00000408746 214 ntBASIC3.6□□□□□ -1.83
CTCFP49711 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC3.6□□□□□ -1.83
CTCFP49711 RPS3AP3-201ENST00000411933 242 ntBASIC3.6□□□□□ -1.83
CTCFP49711 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
CTCFP49711 AC000123.1-201ENST00000418215 516 ntTSL 5 BASIC3.6□□□□□ -1.83
CTCFP49711 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC3.6□□□□□ -1.83
CTCFP49711 AL353706.1-201ENST00000436728 494 ntBASIC3.6□□□□□ -1.83
CTCFP49711 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC3.6□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 100.1 ms