Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 RNU6-583P-201ENST00000516012 92 ntBASIC2.55□□□□□ -2
HOXC4P09017 SNORA70.16-201ENST00000516390 95 ntBASIC2.55□□□□□ -2
HOXC4P09017 AC104233.2-201ENST00000518922 414 ntTSL 3 BASIC2.55□□□□□ -2
HOXC4P09017 ASPH-224ENST00000522603 842 ntTSL 1 (best) BASIC2.55□□□□□ -2
HOXC4P09017 DEFB131D-201ENST00000526803 184 ntBASIC2.55□□□□□ -2
HOXC4P09017 AP003730.2-202ENST00000527281 774 ntTSL 3 BASIC2.55□□□□□ -2
HOXC4P09017 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC2.55□□□□□ -2
HOXC4P09017 AL133271.1-201ENST00000538229 291 ntBASIC2.55□□□□□ -2
HOXC4P09017 CYCSP2-201ENST00000558168 301 ntBASIC2.55□□□□□ -2
HOXC4P09017 LARP7P2-201ENST00000575306 125 ntBASIC2.55□□□□□ -2
HOXC4P09017 AC069114.1-201ENST00000580927 287 ntTSL 2 BASIC2.55□□□□□ -2
HOXC4P09017 U4.3-201ENST00000621047 82 ntBASIC2.55□□□□□ -2
HOXC4P09017 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC2.55□□□□□ -2
HOXC4P09017 AC092656.1-203ENST00000624134 423 ntBASIC2.55□□□□□ -2
HOXC4P09017 AL356596.1-201ENST00000624230 379 ntBASIC2.55□□□□□ -2
HOXC4P09017 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC2.55□□□□□ -2
HOXC4P09017 OR4G11P-202ENST00000642116 1414 ntBASIC2.55□□□□□ -2
HOXC4P09017 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.55□□□□□ -2
HOXC4P09017 AC108206.1-201ENST00000570186 4159 ntBASIC2.55□□□□□ -2
HOXC4P09017 AC091564.4-201ENST00000533934 2194 ntBASIC2.54□□□□□ -2
HOXC4P09017 PABPC1P9-201ENST00000426076 1612 ntBASIC2.54□□□□□ -2
HOXC4P09017 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.54□□□□□ -2
HOXC4P09017 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC2.54□□□□□ -2
HOXC4P09017 MTND4P16-201ENST00000466108 1367 ntBASIC2.54□□□□□ -2
HOXC4P09017 RNU4-82P-201ENST00000362443 140 ntBASIC2.54□□□□□ -2
HOXC4P09017 Y_RNA.359-201ENST00000365498 102 ntBASIC2.54□□□□□ -2
HOXC4P09017 OR5H15-201ENST00000383696 930 ntBASIC2.54□□□□□ -2
HOXC4P09017 Y_RNA.505-201ENST00000384489 102 ntBASIC2.54□□□□□ -2
HOXC4P09017 Y_RNA.559-201ENST00000384686 107 ntBASIC2.54□□□□□ -2
HOXC4P09017 MIR506-201ENST00000384998 124 ntBASIC2.54□□□□□ -2
HOXC4P09017 RNU6-882P-201ENST00000391025 103 ntBASIC2.54□□□□□ -2
HOXC4P09017 Y_RNA.599-201ENST00000410489 109 ntBASIC2.54□□□□□ -2
HOXC4P09017 USP9YP20-201ENST00000419224 558 ntBASIC2.54□□□□□ -2
HOXC4P09017 Z99497.1-201ENST00000421282 135 ntBASIC2.54□□□□□ -2
HOXC4P09017 AL160272.1-201ENST00000421509 521 ntTSL 3 BASIC2.54□□□□□ -2
HOXC4P09017 LINC00387-201ENST00000422609 458 ntTSL 5 BASIC2.54□□□□□ -2
HOXC4P09017 PSMA6P3-201ENST00000428242 164 ntBASIC2.54□□□□□ -2
HOXC4P09017 USP9YP28-201ENST00000435142 589 ntBASIC2.54□□□□□ -2
HOXC4P09017 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC2.54□□□□□ -2
HOXC4P09017 RPL23AP74-201ENST00000437246 471 ntBASIC2.54□□□□□ -2
HOXC4P09017 AL359636.3-201ENST00000439471 301 ntTSL 2 BASIC2.54□□□□□ -2
HOXC4P09017 MTND2P20-201ENST00000440805 661 ntBASIC2.54□□□□□ -2
HOXC4P09017 MTND1P30-201ENST00000441241 901 ntBASIC2.54□□□□□ -2
HOXC4P09017 ELOCP30-201ENST00000447108 299 ntBASIC2.54□□□□□ -2
HOXC4P09017 MTND1P27-201ENST00000451117 902 ntBASIC2.54□□□□□ -2
HOXC4P09017 USP9YP34-201ENST00000453983 808 ntBASIC2.54□□□□□ -2
HOXC4P09017 AC092757.1-201ENST00000467293 467 ntBASIC2.54□□□□□ -2
HOXC4P09017 PLSCR5-AS1-201ENST00000473817 450 ntTSL 3 BASIC2.54□□□□□ -2
HOXC4P09017 AC126182.1-201ENST00000478134 357 ntBASIC2.54□□□□□ -2
HOXC4P09017 AC084117.1-201ENST00000496975 270 ntTSL 5 BASIC2.54□□□□□ -2
HOXC4P09017 AC017037.2-201ENST00000513850 890 ntBASIC2.54□□□□□ -2
HOXC4P09017 ELOC-204ENST00000519487 814 ntAPPRIS P1 TSL 2 BASIC2.54□□□□□ -2
HOXC4P09017 AC004486.1-201ENST00000546846 233 ntBASIC2.54□□□□□ -2
HOXC4P09017 MRPL42-203ENST00000547098 701 ntTSL 3 BASIC2.54□□□□□ -2
HOXC4P09017 AC123905.1-201ENST00000552098 541 ntTSL 4 BASIC2.54□□□□□ -2
HOXC4P09017 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC2.54□□□□□ -2
HOXC4P09017 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC2.54□□□□□ -2
HOXC4P09017 AC234778.2-201ENST00000566241 354 ntBASIC2.54□□□□□ -2
HOXC4P09017 AC012146.1-204ENST00000570712 426 ntTSL 3 BASIC2.54□□□□□ -2
HOXC4P09017 AC118755.1-201ENST00000572923 195 ntTSL 3 BASIC2.54□□□□□ -2
HOXC4P09017 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC2.54□□□□□ -2
HOXC4P09017 AC092354.1-201ENST00000606057 376 ntBASIC2.54□□□□□ -2
HOXC4P09017 AC004492.1-201ENST00000607036 742 ntBASIC2.54□□□□□ -2
HOXC4P09017 AC107214.2-201ENST00000608204 634 ntBASIC2.54□□□□□ -2
HOXC4P09017 AL354810.1-201ENST00000618134 635 ntTSL 3 BASIC2.54□□□□□ -2
HOXC4P09017 AC009509.4-201ENST00000619202 509 ntBASIC2.54□□□□□ -2
HOXC4P09017 AC026585.1-201ENST00000619582 524 ntBASIC2.54□□□□□ -2
HOXC4P09017 AC099842.1-201ENST00000619919 596 ntBASIC2.54□□□□□ -2
HOXC4P09017 AC009878.1-201ENST00000621819 340 ntBASIC2.54□□□□□ -2
HOXC4P09017 CTSLP2-204ENST00000629029 392 ntBASIC2.54□□□□□ -2
HOXC4P09017 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC2.54□□□□□ -2
HOXC4P09017 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC2.54□□□□□ -2
HOXC4P09017 FTLP6-201ENST00000355274 422 ntBASIC2.53□□□□□ -2
HOXC4P09017 RNA5SP88-201ENST00000365560 109 ntBASIC2.53□□□□□ -2
HOXC4P09017 RNU6-1122P-201ENST00000384449 107 ntBASIC2.53□□□□□ -2
HOXC4P09017 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC2.53□□□□□ -2
HOXC4P09017 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC2.53□□□□□ -2
HOXC4P09017 AL445529.1-201ENST00000398713 389 ntBASIC2.53□□□□□ -2
HOXC4P09017 DEFB108C-201ENST00000400154 252 ntBASIC2.53□□□□□ -2
HOXC4P09017 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC2.53□□□□□ -2
HOXC4P09017 AL096701.2-201ENST00000416920 238 ntBASIC2.53□□□□□ -2
HOXC4P09017 AL158834.1-201ENST00000419441 466 ntTSL 5 BASIC2.53□□□□□ -2
HOXC4P09017 MTCO2P34-201ENST00000421994 607 ntBASIC2.53□□□□□ -2
HOXC4P09017 USP9YP14-201ENST00000430663 563 ntBASIC2.53□□□□□ -2
HOXC4P09017 RPL36AP6-201ENST00000435770 321 ntBASIC2.53□□□□□ -2
HOXC4P09017 NDUFB4P6-201ENST00000436819 366 ntBASIC2.53□□□□□ -2
HOXC4P09017 RPS24P1-201ENST00000438550 371 ntBASIC2.53□□□□□ -2
HOXC4P09017 USP9YP29-201ENST00000445112 563 ntBASIC2.53□□□□□ -2
HOXC4P09017 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC2.53□□□□□ -2
HOXC4P09017 AC093422.2-201ENST00000452599 686 ntTSL 2 BASIC2.53□□□□□ -2
HOXC4P09017 MTCO3P11-201ENST00000455103 774 ntBASIC2.53□□□□□ -2
HOXC4P09017 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC2.53□□□□□ -2
HOXC4P09017 SNRPGP9-201ENST00000456025 225 ntBASIC2.53□□□□□ -2
HOXC4P09017 SUMO2P2-201ENST00000456482 255 ntBASIC2.53□□□□□ -2
HOXC4P09017 AC010486.1-201ENST00000511793 424 ntBASIC2.53□□□□□ -2
HOXC4P09017 HMGB1P41-201ENST00000520234 440 ntBASIC2.53□□□□□ -2
HOXC4P09017 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC2.53□□□□□ -2
HOXC4P09017 AP003181.1-201ENST00000528811 445 ntTSL 3 BASIC2.53□□□□□ -2
HOXC4P09017 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC2.53□□□□□ -2
HOXC4P09017 AL450442.1-201ENST00000554042 854 ntTSL 1 (best) BASIC2.53□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 82.9 ms