Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 AC006557.5-201ENST00000603126 811 ntBASIC4.12□□□□□ -1.75
HLA-DOAP06340 CTHRC1P1-201ENST00000605383 469 ntBASIC4.12□□□□□ -1.75
HLA-DOAP06340 MIR486-1-201ENST00000612171 68 ntBASIC4.12□□□□□ -1.75
HLA-DOAP06340 AL603758.1-201ENST00000618654 241 ntBASIC4.12□□□□□ -1.75
HLA-DOAP06340 USP12-203ENST00000620323 349 ntTSL 3 BASIC4.12□□□□□ -1.75
HLA-DOAP06340 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC4.12□□□□□ -1.75
HLA-DOAP06340 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC4.12□□□□□ -1.75
HLA-DOAP06340 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC4.12□□□□□ -1.75
HLA-DOAP06340 ANGPTL1-202ENST00000367629 2289 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
HLA-DOAP06340 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC4.12□□□□□ -1.75
HLA-DOAP06340 AC244517.1-201ENST00000606030 2086 ntBASIC4.12□□□□□ -1.75
HLA-DOAP06340 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC4.12□□□□□ -1.75
HLA-DOAP06340 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC4.11□□□□□ -1.75
HLA-DOAP06340 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC4.11□□□□□ -1.75
HLA-DOAP06340 AC004972.1-201ENST00000623934 2209 ntBASIC4.11□□□□□ -1.75
HLA-DOAP06340 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
HLA-DOAP06340 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC4.11□□□□□ -1.75
HLA-DOAP06340 ASNSP1-201ENST00000518311 1939 ntBASIC4.11□□□□□ -1.75
HLA-DOAP06340 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC4.11□□□□□ -1.75
HLA-DOAP06340 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC4.11□□□□□ -1.75
HLA-DOAP06340 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC4.11□□□□□ -1.75
HLA-DOAP06340 RNU6-525P-201ENST00000363685 104 ntBASIC4.11□□□□□ -1.75
HLA-DOAP06340 RNU6-188P-201ENST00000364207 107 ntBASIC4.11□□□□□ -1.75
HLA-DOAP06340 RNA5SP42-201ENST00000364278 115 ntBASIC4.11□□□□□ -1.75
HLA-DOAP06340 U3.11-201ENST00000364476 212 ntBASIC4.11□□□□□ -1.75
HLA-DOAP06340 RNU6-1078P-201ENST00000364522 103 ntBASIC4.11□□□□□ -1.75
HLA-DOAP06340 RNU4-66P-201ENST00000365199 138 ntBASIC4.11□□□□□ -1.75
HLA-DOAP06340 SNORA70E-201ENST00000384492 135 ntBASIC4.11□□□□□ -1.75
HLA-DOAP06340 RNU6-510P-201ENST00000391239 108 ntBASIC4.11□□□□□ -1.75
HLA-DOAP06340 RNU6-1304P-201ENST00000411374 106 ntBASIC4.11□□□□□ -1.75
HLA-DOAP06340 MTND2P23-201ENST00000422990 651 ntBASIC4.11□□□□□ -1.75
HLA-DOAP06340 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC4.11□□□□□ -1.75
HLA-DOAP06340 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC4.11□□□□□ -1.75
HLA-DOAP06340 HMGB3P9-201ENST00000441799 583 ntBASIC4.11□□□□□ -1.75
HLA-DOAP06340 AC007967.1-201ENST00000455422 1159 ntBASIC4.11□□□□□ -1.75
HLA-DOAP06340 AC096576.1-201ENST00000489014 359 ntBASIC4.11□□□□□ -1.75
HLA-DOAP06340 AC093663.1-201ENST00000497190 394 ntBASIC4.11□□□□□ -1.75
HLA-DOAP06340 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC4.11□□□□□ -1.75
HLA-DOAP06340 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC4.11□□□□□ -1.75
HLA-DOAP06340 FCF1P8-201ENST00000510322 597 ntBASIC4.11□□□□□ -1.75
HLA-DOAP06340 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC4.11□□□□□ -1.75
HLA-DOAP06340 IGKV2-26-201ENST00000518305 343 ntBASIC4.11□□□□□ -1.75
HLA-DOAP06340 RPL7P20-201ENST00000520308 745 ntBASIC4.11□□□□□ -1.75
HLA-DOAP06340 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC4.11□□□□□ -1.75
HLA-DOAP06340 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC4.11□□□□□ -1.75
HLA-DOAP06340 MIR4458-201ENST00000578872 75 ntBASIC4.11□□□□□ -1.75
HLA-DOAP06340 AL669831.4-202ENST00000590817 238 ntBASIC4.11□□□□□ -1.75
HLA-DOAP06340 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC4.11□□□□□ -1.75
HLA-DOAP06340 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC4.11□□□□□ -1.75
HLA-DOAP06340 AC104237.2-201ENST00000612456 443 ntBASIC4.11□□□□□ -1.75
HLA-DOAP06340 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC4.11□□□□□ -1.75
HLA-DOAP06340 AC093908.1-201ENST00000623125 8092 ntBASIC4.11□□□□□ -1.75
HLA-DOAP06340 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC4.11□□□□□ -1.75
HLA-DOAP06340 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC4.11□□□□□ -1.75
HLA-DOAP06340 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC4.11□□□□□ -1.75
HLA-DOAP06340 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC4.11□□□□□ -1.75
HLA-DOAP06340 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC4.11□□□□□ -1.75
HLA-DOAP06340 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC4.11□□□□□ -1.75
HLA-DOAP06340 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
HLA-DOAP06340 AC018555.1-201ENST00000567548 1980 ntBASIC4.11□□□□□ -1.75
HLA-DOAP06340 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
HLA-DOAP06340 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC4.1□□□□□ -1.75
HLA-DOAP06340 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC4.1□□□□□ -1.75
HLA-DOAP06340 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC4.1□□□□□ -1.75
HLA-DOAP06340 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
HLA-DOAP06340 AC006504.1-201ENST00000562493 3666 ntBASIC4.1□□□□□ -1.75
HLA-DOAP06340 Y_RNA.216-201ENST00000364205 93 ntBASIC4.1□□□□□ -1.75
HLA-DOAP06340 RNU6-522P-201ENST00000364497 107 ntBASIC4.1□□□□□ -1.75
HLA-DOAP06340 RNU6-641P-201ENST00000384006 107 ntBASIC4.1□□□□□ -1.75
HLA-DOAP06340 RNU6-1029P-201ENST00000384109 107 ntBASIC4.1□□□□□ -1.75
HLA-DOAP06340 RNU6-821P-201ENST00000390995 107 ntBASIC4.1□□□□□ -1.75
HLA-DOAP06340 RNU6-193P-201ENST00000410977 107 ntBASIC4.1□□□□□ -1.75
HLA-DOAP06340 HMGN1P24-201ENST00000412282 298 ntBASIC4.1□□□□□ -1.75
HLA-DOAP06340 AC114491.1-201ENST00000416095 246 ntBASIC4.1□□□□□ -1.75
HLA-DOAP06340 AC009161.1-201ENST00000417306 376 ntBASIC4.1□□□□□ -1.75
HLA-DOAP06340 AL353729.1-201ENST00000425044 720 ntBASIC4.1□□□□□ -1.75
HLA-DOAP06340 AC017083.1-201ENST00000428093 483 ntBASIC4.1□□□□□ -1.75
HLA-DOAP06340 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC4.1□□□□□ -1.75
HLA-DOAP06340 MTND6P18-201ENST00000439477 513 ntBASIC4.1□□□□□ -1.75
HLA-DOAP06340 RPL23AP33-201ENST00000442301 452 ntBASIC4.1□□□□□ -1.75
HLA-DOAP06340 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC4.1□□□□□ -1.75
HLA-DOAP06340 AC007547.1-201ENST00000462177 490 ntBASIC4.1□□□□□ -1.75
HLA-DOAP06340 AC126389.1-201ENST00000477436 290 ntBASIC4.1□□□□□ -1.75
HLA-DOAP06340 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC4.1□□□□□ -1.75
HLA-DOAP06340 AC105417.1-201ENST00000514691 285 ntBASIC4.1□□□□□ -1.75
HLA-DOAP06340 Y_RNA.691-201ENST00000516611 103 ntBASIC4.1□□□□□ -1.75
HLA-DOAP06340 AP001207.3-201ENST00000520268 491 ntTSL 3 BASIC4.1□□□□□ -1.75
HLA-DOAP06340 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
HLA-DOAP06340 AP000857.1-201ENST00000532151 543 ntBASIC4.1□□□□□ -1.75
HLA-DOAP06340 OR5BN1P-201ENST00000532955 829 ntBASIC4.1□□□□□ -1.75
HLA-DOAP06340 AC020661.2-201ENST00000560114 134 ntBASIC4.1□□□□□ -1.75
HLA-DOAP06340 AC012182.1-201ENST00000570133 895 ntBASIC4.1□□□□□ -1.75
HLA-DOAP06340 MIR3200-201ENST00000580767 85 ntBASIC4.1□□□□□ -1.75
HLA-DOAP06340 AC012669.1-201ENST00000603209 283 ntBASIC4.1□□□□□ -1.75
HLA-DOAP06340 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC4.1□□□□□ -1.75
HLA-DOAP06340 AL360085.1-201ENST00000604713 532 ntBASIC4.1□□□□□ -1.75
HLA-DOAP06340 AL008729.2-201ENST00000606393 473 ntBASIC4.1□□□□□ -1.75
HLA-DOAP06340 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
HLA-DOAP06340 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
HLA-DOAP06340 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC4.1□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 101 ms