Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 AC104653.1-201ENST00000420579 578 ntTSL 2 BASIC2.71□□□□□ -1.98
SDC3O75056 AC011233.1-201ENST00000422812 283 ntBASIC2.71□□□□□ -1.98
SDC3O75056 RPL7P37-201ENST00000425095 738 ntBASIC2.71□□□□□ -1.98
SDC3O75056 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC2.71□□□□□ -1.98
SDC3O75056 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC2.71□□□□□ -1.98
SDC3O75056 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC2.71□□□□□ -1.98
SDC3O75056 Z82210.1-201ENST00000440037 231 ntBASIC2.71□□□□□ -1.98
SDC3O75056 AL049734.2-201ENST00000441066 616 ntBASIC2.71□□□□□ -1.98
SDC3O75056 MTCO3P45-201ENST00000443036 613 ntBASIC2.71□□□□□ -1.98
SDC3O75056 AC009296.1-201ENST00000443146 155 ntBASIC2.71□□□□□ -1.98
SDC3O75056 UBBP3-201ENST00000445497 241 ntBASIC2.71□□□□□ -1.98
SDC3O75056 FTH1P25-201ENST00000447665 469 ntBASIC2.71□□□□□ -1.98
SDC3O75056 RNU7-59P-201ENST00000459101 61 ntBASIC2.71□□□□□ -1.98
SDC3O75056 RPS15AP36-201ENST00000492022 382 ntBASIC2.71□□□□□ -1.98
SDC3O75056 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
SDC3O75056 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC2.71□□□□□ -1.98
SDC3O75056 RNA5SP76-201ENST00000516277 87 ntBASIC2.71□□□□□ -1.98
SDC3O75056 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC2.71□□□□□ -1.98
SDC3O75056 MTCO1P47-201ENST00000523889 1271 ntBASIC2.71□□□□□ -1.98
SDC3O75056 AHI1-212ENST00000528103 441 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
SDC3O75056 AP000857.1-201ENST00000532151 543 ntBASIC2.71□□□□□ -1.98
SDC3O75056 AC007954.1-201ENST00000554198 494 ntBASIC2.71□□□□□ -1.98
SDC3O75056 AF038458.1-201ENST00000588406 262 ntBASIC2.71□□□□□ -1.98
SDC3O75056 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC2.71□□□□□ -1.98
SDC3O75056 AC010620.2-201ENST00000600135 313 ntBASIC2.71□□□□□ -1.98
SDC3O75056 Z99289.3-201ENST00000605586 594 ntBASIC2.71□□□□□ -1.98
SDC3O75056 AC007038.2-201ENST00000608095 740 ntBASIC2.71□□□□□ -1.98
SDC3O75056 AL359198.2-201ENST00000611836 194 ntBASIC2.71□□□□□ -1.98
SDC3O75056 ANKRD36C-207ENST00000612359 650 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
SDC3O75056 UBE2Q2P6-201ENST00000612666 153 ntBASIC2.71□□□□□ -1.98
SDC3O75056 AC010133.1-201ENST00000615809 842 ntBASIC2.71□□□□□ -1.98
SDC3O75056 UCA1.1-201ENST00000620952 75 ntBASIC2.71□□□□□ -1.98
SDC3O75056 MIR6733-201ENST00000635723 61 ntBASIC2.71□□□□□ -1.98
SDC3O75056 AC010149.2-201ENST00000637608 315 ntBASIC2.71□□□□□ -1.98
SDC3O75056 AC006927.3-201ENST00000638789 384 ntBASIC2.71□□□□□ -1.98
SDC3O75056 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC2.71□□□□□ -1.98
SDC3O75056 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC2.71□□□□□ -1.98
SDC3O75056 AC022336.2-201ENST00000568966 2538 ntBASIC2.71□□□□□ -1.98
SDC3O75056 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC2.71□□□□□ -1.98
SDC3O75056 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC2.7□□□□□ -1.98
SDC3O75056 U3.12-201ENST00000364498 214 ntBASIC2.7□□□□□ -1.98
SDC3O75056 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC2.7□□□□□ -1.98
SDC3O75056 AC005005.2-201ENST00000420779 380 ntBASIC2.7□□□□□ -1.98
SDC3O75056 RPS27AP14-201ENST00000422868 454 ntBASIC2.7□□□□□ -1.98
SDC3O75056 AC009414.1-201ENST00000427200 443 ntBASIC2.7□□□□□ -1.98
SDC3O75056 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC2.7□□□□□ -1.98
SDC3O75056 AC104653.2-201ENST00000435407 416 ntTSL 3 BASIC2.7□□□□□ -1.98
SDC3O75056 RPL37P21-201ENST00000435890 276 ntBASIC2.7□□□□□ -1.98
SDC3O75056 AL139237.2-201ENST00000438454 493 ntTSL 3 BASIC2.7□□□□□ -1.98
SDC3O75056 BNIP3P2-201ENST00000441221 577 ntBASIC2.7□□□□□ -1.98
SDC3O75056 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC2.7□□□□□ -1.98
SDC3O75056 GSTA11P-201ENST00000452866 669 ntBASIC2.7□□□□□ -1.98
SDC3O75056 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC2.7□□□□□ -1.98
SDC3O75056 RNU7-23P-201ENST00000459465 62 ntBASIC2.7□□□□□ -1.98
SDC3O75056 RPL21P41-201ENST00000459863 264 ntBASIC2.7□□□□□ -1.98
SDC3O75056 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC2.7□□□□□ -1.98
SDC3O75056 AC138853.1-201ENST00000503549 823 ntBASIC2.7□□□□□ -1.98
SDC3O75056 RNU6-1003P-201ENST00000517099 105 ntBASIC2.7□□□□□ -1.98
SDC3O75056 AC008662.2-201ENST00000522426 389 ntTSL 5 BASIC2.7□□□□□ -1.98
SDC3O75056 AC018410.2-201ENST00000540410 610 ntTSL 5 BASIC2.7□□□□□ -1.98
SDC3O75056 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC2.7□□□□□ -1.98
SDC3O75056 AC090616.2-202ENST00000584248 222 ntBASIC2.7□□□□□ -1.98
SDC3O75056 AC068790.3-201ENST00000602988 553 ntBASIC2.7□□□□□ -1.98
SDC3O75056 AL136363.1-201ENST00000605349 337 ntBASIC2.7□□□□□ -1.98
SDC3O75056 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC2.7□□□□□ -1.98
SDC3O75056 AL360219.1-201ENST00000610230 366 ntBASIC2.7□□□□□ -1.98
SDC3O75056 AP000770.2-201ENST00000623694 100 ntBASIC2.7□□□□□ -1.98
SDC3O75056 AC112204.3-201ENST00000623822 332 ntBASIC2.7□□□□□ -1.98
SDC3O75056 AC243829.7-201ENST00000633081 225 ntBASIC2.7□□□□□ -1.98
SDC3O75056 AC092593.1-201ENST00000515413 1815 ntBASIC2.7□□□□□ -1.98
SDC3O75056 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
SDC3O75056 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
SDC3O75056 AC107029.2-201ENST00000462011 2305 ntTSL 2 BASIC2.69□□□□□ -1.98
SDC3O75056 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC2.69□□□□□ -1.98
SDC3O75056 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC2.69□□□□□ -1.98
SDC3O75056 MIR512-1-201ENST00000384913 84 ntBASIC2.69□□□□□ -1.98
SDC3O75056 SNORD88.1-201ENST00000408684 91 ntBASIC2.69□□□□□ -1.98
SDC3O75056 RNA5SP21-201ENST00000410917 96 ntBASIC2.69□□□□□ -1.98
SDC3O75056 RNU6-193P-201ENST00000410977 107 ntBASIC2.69□□□□□ -1.98
SDC3O75056 AL451054.2-201ENST00000420896 202 ntBASIC2.69□□□□□ -1.98
SDC3O75056 USP9YP26-201ENST00000421008 661 ntBASIC2.69□□□□□ -1.98
SDC3O75056 MTND4P20-201ENST00000424125 869 ntBASIC2.69□□□□□ -1.98
SDC3O75056 AC092047.1-201ENST00000424997 240 ntBASIC2.69□□□□□ -1.98
SDC3O75056 AL365496.1-201ENST00000426885 215 ntBASIC2.69□□□□□ -1.98
SDC3O75056 AC017048.2-201ENST00000431455 822 ntTSL 3 BASIC2.69□□□□□ -1.98
SDC3O75056 USP12PX-201ENST00000432383 1057 ntBASIC2.69□□□□□ -1.98
SDC3O75056 LAMTOR5P1-201ENST00000444290 270 ntBASIC2.69□□□□□ -1.98
SDC3O75056 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC2.69□□□□□ -1.98
SDC3O75056 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC2.69□□□□□ -1.98
SDC3O75056 CHRM3-AS2-203ENST00000458325 895 ntTSL 2 BASIC2.69□□□□□ -1.98
SDC3O75056 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC2.69□□□□□ -1.98
SDC3O75056 RPS20P22-201ENST00000473700 357 ntBASIC2.69□□□□□ -1.98
SDC3O75056 AP004217.1-201ENST00000480579 346 ntBASIC2.69□□□□□ -1.98
SDC3O75056 SRI-210ENST00000490437 570 ntTSL 2 BASIC2.69□□□□□ -1.98
SDC3O75056 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC2.69□□□□□ -1.98
SDC3O75056 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC2.69□□□□□ -1.98
SDC3O75056 AC100870.1-201ENST00000522035 505 ntBASIC2.69□□□□□ -1.98
SDC3O75056 MAL2-203ENST00000534619 578 ntTSL 4 BASIC2.69□□□□□ -1.98
SDC3O75056 HPRT1P3-201ENST00000539521 576 ntBASIC2.69□□□□□ -1.98
SDC3O75056 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC2.69□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 171.8 ms