Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 CCNC-219ENST00000627680 896 ntTSL 5 BASIC22.63■■□□□ 1.21
SMC1BQ8NDV3 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC22.63■■□□□ 1.21
SMC1BQ8NDV3 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC22.63■■□□□ 1.21
SMC1BQ8NDV3 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
SMC1BQ8NDV3 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
SMC1BQ8NDV3 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC22.63■■□□□ 1.21
SMC1BQ8NDV3 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
SMC1BQ8NDV3 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC22.62■■□□□ 1.21
SMC1BQ8NDV3 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
SMC1BQ8NDV3 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
SMC1BQ8NDV3 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC22.62■■□□□ 1.21
SMC1BQ8NDV3 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
SMC1BQ8NDV3 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
SMC1BQ8NDV3 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC22.62■■□□□ 1.21
SMC1BQ8NDV3 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
SMC1BQ8NDV3 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
SMC1BQ8NDV3 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC22.62■■□□□ 1.21
SMC1BQ8NDV3 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
SMC1BQ8NDV3 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
SMC1BQ8NDV3 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
SMC1BQ8NDV3 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
SMC1BQ8NDV3 SEC1P-202ENST00000473944 940 ntBASIC22.62■■□□□ 1.21
SMC1BQ8NDV3 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC22.62■■□□□ 1.21
SMC1BQ8NDV3 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC22.62■■□□□ 1.21
SMC1BQ8NDV3 LITAF-211ENST00000572255 516 ntTSL 4 BASIC22.62■■□□□ 1.21
SMC1BQ8NDV3 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC22.62■■□□□ 1.21
SMC1BQ8NDV3 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC22.62■■□□□ 1.21
SMC1BQ8NDV3 AC010327.4-202ENST00000591484 748 ntBASIC22.62■■□□□ 1.21
SMC1BQ8NDV3 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC22.62■■□□□ 1.21
SMC1BQ8NDV3 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC22.62■■□□□ 1.21
SMC1BQ8NDV3 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC22.62■■□□□ 1.21
SMC1BQ8NDV3 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC22.62■■□□□ 1.21
SMC1BQ8NDV3 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC22.62■■□□□ 1.21
SMC1BQ8NDV3 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC22.62■■□□□ 1.21
SMC1BQ8NDV3 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC22.62■■□□□ 1.21
SMC1BQ8NDV3 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC22.62■■□□□ 1.21
SMC1BQ8NDV3 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
SMC1BQ8NDV3 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
SMC1BQ8NDV3 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC22.61■■□□□ 1.21
SMC1BQ8NDV3 RPSAP43-201ENST00000402237 625 ntBASIC22.61■■□□□ 1.21
SMC1BQ8NDV3 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC22.61■■□□□ 1.21
SMC1BQ8NDV3 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC22.61■■□□□ 1.21
SMC1BQ8NDV3 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC22.61■■□□□ 1.21
SMC1BQ8NDV3 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC22.61■■□□□ 1.21
SMC1BQ8NDV3 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
SMC1BQ8NDV3 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC22.61■■□□□ 1.21
SMC1BQ8NDV3 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
SMC1BQ8NDV3 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
SMC1BQ8NDV3 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC22.61■■□□□ 1.21
SMC1BQ8NDV3 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC22.6■■□□□ 1.21
SMC1BQ8NDV3 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
SMC1BQ8NDV3 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC22.6■■□□□ 1.21
SMC1BQ8NDV3 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC22.6■■□□□ 1.21
SMC1BQ8NDV3 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
SMC1BQ8NDV3 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC22.6■■□□□ 1.21
SMC1BQ8NDV3 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
SMC1BQ8NDV3 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
SMC1BQ8NDV3 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC22.6■■□□□ 1.21
SMC1BQ8NDV3 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC22.6■■□□□ 1.21
SMC1BQ8NDV3 IRF8-202ENST00000562492 946 ntTSL 3 BASIC22.6■■□□□ 1.21
SMC1BQ8NDV3 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC22.6■■□□□ 1.21
SMC1BQ8NDV3 LITAF-220ENST00000620789 692 ntTSL 5 BASIC22.6■■□□□ 1.21
SMC1BQ8NDV3 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC22.6■■□□□ 1.21
SMC1BQ8NDV3 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC22.6■■□□□ 1.21
SMC1BQ8NDV3 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC22.6■■□□□ 1.21
SMC1BQ8NDV3 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC22.6■■□□□ 1.21
SMC1BQ8NDV3 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
SMC1BQ8NDV3 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
SMC1BQ8NDV3 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
SMC1BQ8NDV3 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC22.6■■□□□ 1.21
SMC1BQ8NDV3 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
SMC1BQ8NDV3 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC22.59■■□□□ 1.21
SMC1BQ8NDV3 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC22.59■■□□□ 1.21
SMC1BQ8NDV3 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
SMC1BQ8NDV3 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
SMC1BQ8NDV3 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC22.59■■□□□ 1.21
SMC1BQ8NDV3 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC22.59■■□□□ 1.21
SMC1BQ8NDV3 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC22.59■■□□□ 1.21
SMC1BQ8NDV3 EP400NL-214ENST00000641289 2402 ntBASIC22.59■■□□□ 1.21
SMC1BQ8NDV3 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
SMC1BQ8NDV3 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC22.59■■□□□ 1.21
SMC1BQ8NDV3 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
SMC1BQ8NDV3 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
SMC1BQ8NDV3 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
SMC1BQ8NDV3 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
SMC1BQ8NDV3 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
SMC1BQ8NDV3 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC22.59■■□□□ 1.21
SMC1BQ8NDV3 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
SMC1BQ8NDV3 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
SMC1BQ8NDV3 GPX1P2-201ENST00000429271 606 ntBASIC22.59■■□□□ 1.21
SMC1BQ8NDV3 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC22.59■■□□□ 1.21
SMC1BQ8NDV3 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
SMC1BQ8NDV3 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
SMC1BQ8NDV3 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC22.59■■□□□ 1.21
SMC1BQ8NDV3 AC005332.3-201ENST00000589904 676 ntBASIC22.59■■□□□ 1.21
SMC1BQ8NDV3 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
SMC1BQ8NDV3 STK25-234ENST00000535007 2459 ntTSL 2 BASIC22.59■■□□□ 1.21
SMC1BQ8NDV3 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
SMC1BQ8NDV3 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
SMC1BQ8NDV3 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC22.58■■□□□ 1.21
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms