Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 PHGDH-210ENST00000641115 1638 ntBASIC13.82□□□□□ -0.2
PRKDCP78527 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC13.82□□□□□ -0.2
PRKDCP78527 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC13.82□□□□□ -0.2
PRKDCP78527 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
PRKDCP78527 ATP6V0CP3-201ENST00000417255 467 ntBASIC13.82□□□□□ -0.2
PRKDCP78527 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
PRKDCP78527 SCARNA2-201ENST00000458748 420 ntBASIC13.82□□□□□ -0.2
PRKDCP78527 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
PRKDCP78527 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC13.82□□□□□ -0.2
PRKDCP78527 AL356488.2-201ENST00000602755 427 ntBASIC13.82□□□□□ -0.2
PRKDCP78527 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
PRKDCP78527 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
PRKDCP78527 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
PRKDCP78527 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
PRKDCP78527 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC13.82□□□□□ -0.2
PRKDCP78527 KRT18P3-201ENST00000451602 1288 ntBASIC13.82□□□□□ -0.2
PRKDCP78527 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC13.82□□□□□ -0.2
PRKDCP78527 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
PRKDCP78527 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC13.82□□□□□ -0.2
PRKDCP78527 AC012645.4-201ENST00000610691 1061 ntBASIC13.82□□□□□ -0.2
PRKDCP78527 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
PRKDCP78527 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC13.81□□□□□ -0.2
PRKDCP78527 ZNF259P1-201ENST00000407656 1365 ntBASIC13.81□□□□□ -0.2
PRKDCP78527 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
PRKDCP78527 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC13.81□□□□□ -0.2
PRKDCP78527 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC13.81□□□□□ -0.2
PRKDCP78527 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
PRKDCP78527 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
PRKDCP78527 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
PRKDCP78527 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC13.81□□□□□ -0.2
PRKDCP78527 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
PRKDCP78527 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC13.81□□□□□ -0.2
PRKDCP78527 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC13.81□□□□□ -0.2
PRKDCP78527 DNAJB3-201ENST00000446806 729 ntBASIC13.81□□□□□ -0.2
PRKDCP78527 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC13.81□□□□□ -0.2
PRKDCP78527 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC13.81□□□□□ -0.2
PRKDCP78527 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
PRKDCP78527 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
PRKDCP78527 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC13.81□□□□□ -0.2
PRKDCP78527 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
PRKDCP78527 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC13.81□□□□□ -0.2
PRKDCP78527 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
PRKDCP78527 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
PRKDCP78527 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
PRKDCP78527 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
PRKDCP78527 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC13.81□□□□□ -0.2
PRKDCP78527 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
PRKDCP78527 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
PRKDCP78527 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
PRKDCP78527 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
PRKDCP78527 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC13.81□□□□□ -0.2
PRKDCP78527 FAM197Y3-203ENST00000618346 717 ntBASIC13.81□□□□□ -0.2
PRKDCP78527 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC13.81□□□□□ -0.2
PRKDCP78527 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC13.81□□□□□ -0.2
PRKDCP78527 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
PRKDCP78527 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC13.81□□□□□ -0.2
PRKDCP78527 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
PRKDCP78527 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
PRKDCP78527 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
PRKDCP78527 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
PRKDCP78527 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC13.8□□□□□ -0.2
PRKDCP78527 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC13.8□□□□□ -0.2
PRKDCP78527 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
PRKDCP78527 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC13.8□□□□□ -0.2
PRKDCP78527 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC13.8□□□□□ -0.2
PRKDCP78527 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
PRKDCP78527 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
PRKDCP78527 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
PRKDCP78527 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC13.8□□□□□ -0.2
PRKDCP78527 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
PRKDCP78527 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC13.8□□□□□ -0.2
PRKDCP78527 MIR3687-2-201ENST00000577708 61 ntBASIC13.8□□□□□ -0.2
PRKDCP78527 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC13.8□□□□□ -0.2
PRKDCP78527 MIR3687-1-201ENST00000614492 61 ntBASIC13.8□□□□□ -0.2
PRKDCP78527 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
PRKDCP78527 PARN-205ENST00000539279 1557 ntTSL 2 BASIC13.8□□□□□ -0.2
PRKDCP78527 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC13.8□□□□□ -0.2
PRKDCP78527 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
PRKDCP78527 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
PRKDCP78527 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC13.8□□□□□ -0.2
PRKDCP78527 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
PRKDCP78527 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC13.8□□□□□ -0.2
PRKDCP78527 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC13.8□□□□□ -0.2
PRKDCP78527 PAM16-208ENST00000573553 722 ntTSL 2 BASIC13.8□□□□□ -0.2
PRKDCP78527 AL596442.2-201ENST00000610240 980 ntBASIC13.8□□□□□ -0.2
PRKDCP78527 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
PRKDCP78527 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC13.8□□□□□ -0.2
PRKDCP78527 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
PRKDCP78527 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
PRKDCP78527 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
PRKDCP78527 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC13.79□□□□□ -0.2
PRKDCP78527 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC13.79□□□□□ -0.2
PRKDCP78527 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC13.79□□□□□ -0.2
PRKDCP78527 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC13.79□□□□□ -0.2
PRKDCP78527 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC13.79□□□□□ -0.2
PRKDCP78527 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
PRKDCP78527 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
PRKDCP78527 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC13.79□□□□□ -0.2
PRKDCP78527 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
PRKDCP78527 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms