Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC20.45■□□□□ 0.86
COL4A4P53420 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL4A4P53420 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL4A4P53420 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL4A4P53420 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL4A4P53420 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC20.45■□□□□ 0.86
COL4A4P53420 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL4A4P53420 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL4A4P53420 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC20.45■□□□□ 0.86
COL4A4P53420 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC20.45■□□□□ 0.86
COL4A4P53420 AC092597.1-201ENST00000487352 616 ntBASIC20.45■□□□□ 0.86
COL4A4P53420 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC20.45■□□□□ 0.86
COL4A4P53420 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC20.45■□□□□ 0.86
COL4A4P53420 TPSP2-201ENST00000561760 610 ntBASIC20.45■□□□□ 0.86
COL4A4P53420 AC120114.3-201ENST00000611923 658 ntBASIC20.45■□□□□ 0.86
COL4A4P53420 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
COL4A4P53420 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
COL4A4P53420 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL4A4P53420 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL4A4P53420 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC20.44■□□□□ 0.86
COL4A4P53420 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
COL4A4P53420 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
COL4A4P53420 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL4A4P53420 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL4A4P53420 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
COL4A4P53420 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL4A4P53420 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC20.44■□□□□ 0.86
COL4A4P53420 BX276092.5-203ENST00000456199 560 ntBASIC20.44■□□□□ 0.86
COL4A4P53420 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC20.44■□□□□ 0.86
COL4A4P53420 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL4A4P53420 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL4A4P53420 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
COL4A4P53420 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL4A4P53420 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL4A4P53420 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC20.44■□□□□ 0.86
COL4A4P53420 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL4A4P53420 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL4A4P53420 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL4A4P53420 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL4A4P53420 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
COL4A4P53420 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
COL4A4P53420 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL4A4P53420 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL4A4P53420 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL4A4P53420 RASA4DP-201ENST00000460726 1199 ntBASIC20.43■□□□□ 0.86
COL4A4P53420 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC20.43■□□□□ 0.86
COL4A4P53420 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC20.43■□□□□ 0.86
COL4A4P53420 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
COL4A4P53420 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
COL4A4P53420 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
COL4A4P53420 AL121672.3-201ENST00000608644 468 ntBASIC20.43■□□□□ 0.86
COL4A4P53420 AC006538.3-201ENST00000612495 578 ntBASIC20.43■□□□□ 0.86
COL4A4P53420 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC20.43■□□□□ 0.86
COL4A4P53420 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
COL4A4P53420 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC20.43■□□□□ 0.86
COL4A4P53420 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC20.43■□□□□ 0.86
COL4A4P53420 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC20.43■□□□□ 0.86
COL4A4P53420 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC20.43■□□□□ 0.86
COL4A4P53420 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL4A4P53420 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL4A4P53420 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
COL4A4P53420 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL4A4P53420 AP000593.1-201ENST00000393668 712 ntBASIC20.42■□□□□ 0.86
COL4A4P53420 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC20.42■□□□□ 0.86
COL4A4P53420 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC20.42■□□□□ 0.86
COL4A4P53420 BMF-207ENST00000559701 630 ntTSL 3 BASIC20.42■□□□□ 0.86
COL4A4P53420 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL4A4P53420 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL4A4P53420 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC20.42■□□□□ 0.86
COL4A4P53420 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL4A4P53420 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL4A4P53420 TREX1-205ENST00000625293 1783 ntBASIC20.42■□□□□ 0.86
COL4A4P53420 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
COL4A4P53420 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC20.42■□□□□ 0.86
COL4A4P53420 AC016734.2-201ENST00000624325 1377 ntBASIC20.42■□□□□ 0.86
COL4A4P53420 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
COL4A4P53420 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
COL4A4P53420 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC20.42■□□□□ 0.86
COL4A4P53420 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL4A4P53420 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL4A4P53420 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
COL4A4P53420 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC20.42■□□□□ 0.86
COL4A4P53420 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC20.42■□□□□ 0.86
COL4A4P53420 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL4A4P53420 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC20.42■□□□□ 0.86
COL4A4P53420 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC20.42■□□□□ 0.86
COL4A4P53420 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC20.42■□□□□ 0.86
COL4A4P53420 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
COL4A4P53420 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC20.41■□□□□ 0.86
COL4A4P53420 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
COL4A4P53420 KRT18P1-202ENST00000452408 1331 ntBASIC20.41■□□□□ 0.86
COL4A4P53420 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
COL4A4P53420 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
COL4A4P53420 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC20.41■□□□□ 0.86
COL4A4P53420 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
COL4A4P53420 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
COL4A4P53420 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
COL4A4P53420 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC20.41■□□□□ 0.86
COL4A4P53420 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
COL4A4P53420 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms