Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PTPN4P29074 KLF2-202ENST00000592003 564 ntTSL 3 BASIC19.13■□□□□ 0.65
PTPN4P29074 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC19.13■□□□□ 0.65
PTPN4P29074 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
PTPN4P29074 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC19.13■□□□□ 0.65
PTPN4P29074 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
PTPN4P29074 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
PTPN4P29074 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
PTPN4P29074 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PTPN4P29074 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PTPN4P29074 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
PTPN4P29074 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
PTPN4P29074 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
PTPN4P29074 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
PTPN4P29074 NOC2LP1-202ENST00000452600 2235 ntBASIC19.12■□□□□ 0.65
PTPN4P29074 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
PTPN4P29074 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
PTPN4P29074 AL161938.1-201ENST00000569833 2180 ntBASIC19.12■□□□□ 0.65
PTPN4P29074 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC19.12■□□□□ 0.65
PTPN4P29074 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
PTPN4P29074 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC19.12■□□□□ 0.65
PTPN4P29074 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
PTPN4P29074 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
PTPN4P29074 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
PTPN4P29074 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
PTPN4P29074 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC19.12■□□□□ 0.65
PTPN4P29074 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC19.12■□□□□ 0.65
PTPN4P29074 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
PTPN4P29074 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC19.12■□□□□ 0.65
PTPN4P29074 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC19.12■□□□□ 0.65
PTPN4P29074 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC19.12■□□□□ 0.65
PTPN4P29074 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
PTPN4P29074 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
PTPN4P29074 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC19.12■□□□□ 0.65
PTPN4P29074 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC19.12■□□□□ 0.65
PTPN4P29074 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC19.12■□□□□ 0.65
PTPN4P29074 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
PTPN4P29074 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC19.11■□□□□ 0.65
PTPN4P29074 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
PTPN4P29074 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
PTPN4P29074 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
PTPN4P29074 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
PTPN4P29074 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
PTPN4P29074 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
PTPN4P29074 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
PTPN4P29074 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
PTPN4P29074 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
PTPN4P29074 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC19.11■□□□□ 0.65
PTPN4P29074 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
PTPN4P29074 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC19.11■□□□□ 0.65
PTPN4P29074 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
PTPN4P29074 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
PTPN4P29074 SERP1-205ENST00000487153 657 ntTSL 4 BASIC19.11■□□□□ 0.65
PTPN4P29074 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC19.11■□□□□ 0.65
PTPN4P29074 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC19.11■□□□□ 0.65
PTPN4P29074 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC19.11■□□□□ 0.65
PTPN4P29074 AC005829.2-201ENST00000571422 1056 ntBASIC19.11■□□□□ 0.65
PTPN4P29074 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
PTPN4P29074 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
PTPN4P29074 BICD1-207ENST00000551848 1962 ntBASIC19.11■□□□□ 0.65
PTPN4P29074 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC19.11■□□□□ 0.65
PTPN4P29074 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
PTPN4P29074 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
PTPN4P29074 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
PTPN4P29074 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
PTPN4P29074 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
PTPN4P29074 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
PTPN4P29074 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
PTPN4P29074 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
PTPN4P29074 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC19.1■□□□□ 0.65
PTPN4P29074 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
PTPN4P29074 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
PTPN4P29074 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
PTPN4P29074 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
PTPN4P29074 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC19.1■□□□□ 0.65
PTPN4P29074 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC19.1■□□□□ 0.65
PTPN4P29074 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
PTPN4P29074 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC19.1■□□□□ 0.65
PTPN4P29074 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
PTPN4P29074 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
PTPN4P29074 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
PTPN4P29074 ABHD17AP6-201ENST00000458502 1044 ntBASIC19.1■□□□□ 0.65
PTPN4P29074 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC19.1■□□□□ 0.65
PTPN4P29074 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC19.1■□□□□ 0.65
PTPN4P29074 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
PTPN4P29074 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
PTPN4P29074 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
PTPN4P29074 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
PTPN4P29074 FZD10-202ENST00000539839 3282 ntBASIC19.1■□□□□ 0.65
PTPN4P29074 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
PTPN4P29074 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC19.1■□□□□ 0.65
PTPN4P29074 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
PTPN4P29074 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
PTPN4P29074 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
PTPN4P29074 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
PTPN4P29074 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC19.1■□□□□ 0.65
PTPN4P29074 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
PTPN4P29074 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC19.1■□□□□ 0.65
PTPN4P29074 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
PTPN4P29074 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms