Protein–RNA interactions for Protein: P16234

PDGFRA, Platelet-derived growth factor receptor alpha, humanhuman

Predictions only

Length 1,089 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRAP16234 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC20.03■□□□□ 0.8
PDGFRAP16234 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC20.03■□□□□ 0.8
PDGFRAP16234 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
PDGFRAP16234 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
PDGFRAP16234 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
PDGFRAP16234 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
PDGFRAP16234 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
PDGFRAP16234 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC20.03■□□□□ 0.8
PDGFRAP16234 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
PDGFRAP16234 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
PDGFRAP16234 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
PDGFRAP16234 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
PDGFRAP16234 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
PDGFRAP16234 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC20.03■□□□□ 0.8
PDGFRAP16234 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC20.03■□□□□ 0.8
PDGFRAP16234 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC20.03■□□□□ 0.8
PDGFRAP16234 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC20.03■□□□□ 0.8
PDGFRAP16234 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
PDGFRAP16234 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC20.03■□□□□ 0.8
PDGFRAP16234 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC20.03■□□□□ 0.8
PDGFRAP16234 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
PDGFRAP16234 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC20.03■□□□□ 0.8
PDGFRAP16234 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC20.03■□□□□ 0.8
PDGFRAP16234 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
PDGFRAP16234 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
PDGFRAP16234 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
PDGFRAP16234 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC20.03■□□□□ 0.8
PDGFRAP16234 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
PDGFRAP16234 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
PDGFRAP16234 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC20.03■□□□□ 0.8
PDGFRAP16234 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
PDGFRAP16234 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
PDGFRAP16234 FEM1AP3-201ENST00000403722 1741 ntBASIC20.02■□□□□ 0.8
PDGFRAP16234 UBQLN4P1-201ENST00000461599 1801 ntBASIC20.02■□□□□ 0.8
PDGFRAP16234 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
PDGFRAP16234 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.8
PDGFRAP16234 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
PDGFRAP16234 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
PDGFRAP16234 TSPY23P-201ENST00000440136 739 ntBASIC20.02■□□□□ 0.8
PDGFRAP16234 DHDH-203ENST00000522614 776 ntTSL 5 BASIC20.02■□□□□ 0.8
PDGFRAP16234 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC20.02■□□□□ 0.8
PDGFRAP16234 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC20.02■□□□□ 0.8
PDGFRAP16234 MIR4785-201ENST00000585005 73 ntBASIC20.02■□□□□ 0.8
PDGFRAP16234 RCC2P6-201ENST00000526625 1557 ntBASIC20.02■□□□□ 0.8
PDGFRAP16234 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
PDGFRAP16234 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
PDGFRAP16234 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
PDGFRAP16234 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
PDGFRAP16234 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.79
PDGFRAP16234 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC20.02■□□□□ 0.79
PDGFRAP16234 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
PDGFRAP16234 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC20.02■□□□□ 0.79
PDGFRAP16234 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
PDGFRAP16234 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
PDGFRAP16234 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
PDGFRAP16234 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC20.01■□□□□ 0.79
PDGFRAP16234 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC20.01■□□□□ 0.79
PDGFRAP16234 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
PDGFRAP16234 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
PDGFRAP16234 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC20.01■□□□□ 0.79
PDGFRAP16234 DERL1-203ENST00000419562 918 ntTSL 2 BASIC20.01■□□□□ 0.79
PDGFRAP16234 AC026271.3-201ENST00000571884 352 ntBASIC20.01■□□□□ 0.79
PDGFRAP16234 AC026471.5-201ENST00000615068 467 ntBASIC20.01■□□□□ 0.79
PDGFRAP16234 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
PDGFRAP16234 GOLGA6L5P-202ENST00000515341 1828 ntBASIC20.01■□□□□ 0.79
PDGFRAP16234 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC20.01■□□□□ 0.79
PDGFRAP16234 KRT17P2-201ENST00000300992 1314 ntBASIC20.01■□□□□ 0.79
PDGFRAP16234 SRI-203ENST00000419179 1307 ntTSL 2 BASIC20.01■□□□□ 0.79
PDGFRAP16234 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
PDGFRAP16234 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
PDGFRAP16234 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC20■□□□□ 0.79
PDGFRAP16234 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
PDGFRAP16234 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC20■□□□□ 0.79
PDGFRAP16234 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
PDGFRAP16234 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
PDGFRAP16234 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
PDGFRAP16234 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC20■□□□□ 0.79
PDGFRAP16234 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC20■□□□□ 0.79
PDGFRAP16234 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC20■□□□□ 0.79
PDGFRAP16234 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
PDGFRAP16234 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
PDGFRAP16234 AC004951.3-201ENST00000418645 1148 ntBASIC20■□□□□ 0.79
PDGFRAP16234 AC091390.4-202ENST00000476426 537 ntBASIC20■□□□□ 0.79
PDGFRAP16234 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC20■□□□□ 0.79
PDGFRAP16234 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC20■□□□□ 0.79
PDGFRAP16234 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
PDGFRAP16234 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
PDGFRAP16234 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
PDGFRAP16234 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
PDGFRAP16234 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC20■□□□□ 0.79
PDGFRAP16234 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
PDGFRAP16234 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC20■□□□□ 0.79
PDGFRAP16234 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC20■□□□□ 0.79
PDGFRAP16234 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC20■□□□□ 0.79
PDGFRAP16234 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
PDGFRAP16234 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC20■□□□□ 0.79
PDGFRAP16234 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
PDGFRAP16234 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
PDGFRAP16234 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
PDGFRAP16234 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms