Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
NPHP1O15259 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
NPHP1O15259 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
NPHP1O15259 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
NPHP1O15259 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
NPHP1O15259 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC24.02■■□□□ 1.44
NPHP1O15259 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC24.02■■□□□ 1.44
NPHP1O15259 LY6E-213ENST00000522528 606 ntTSL 3 BASIC24.02■■□□□ 1.44
NPHP1O15259 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC24.02■■□□□ 1.44
NPHP1O15259 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC24.02■■□□□ 1.44
NPHP1O15259 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
NPHP1O15259 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
NPHP1O15259 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC24.02■■□□□ 1.44
NPHP1O15259 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC24.02■■□□□ 1.44
NPHP1O15259 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC24.02■■□□□ 1.44
NPHP1O15259 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC24.02■■□□□ 1.43
NPHP1O15259 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC24.02■■□□□ 1.43
NPHP1O15259 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
NPHP1O15259 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
NPHP1O15259 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC24.01■■□□□ 1.43
NPHP1O15259 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
NPHP1O15259 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
NPHP1O15259 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC24.01■■□□□ 1.43
NPHP1O15259 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC24.01■■□□□ 1.43
NPHP1O15259 ANKRD18DP-204ENST00000455355 1975 ntBASIC24.01■■□□□ 1.43
NPHP1O15259 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC24.01■■□□□ 1.43
NPHP1O15259 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC24.01■■□□□ 1.43
NPHP1O15259 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC24.01■■□□□ 1.43
NPHP1O15259 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
NPHP1O15259 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC24■■□□□ 1.43
NPHP1O15259 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
NPHP1O15259 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC24■■□□□ 1.43
NPHP1O15259 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC24■■□□□ 1.43
NPHP1O15259 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC24■■□□□ 1.43
NPHP1O15259 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
NPHP1O15259 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC24■■□□□ 1.43
NPHP1O15259 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
NPHP1O15259 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC24■■□□□ 1.43
NPHP1O15259 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC24■■□□□ 1.43
NPHP1O15259 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC24■■□□□ 1.43
NPHP1O15259 BCL10-202ENST00000620248 774 ntTSL 5 BASIC24■■□□□ 1.43
NPHP1O15259 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC24■■□□□ 1.43
NPHP1O15259 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
NPHP1O15259 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
NPHP1O15259 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC24■■□□□ 1.43
NPHP1O15259 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC24■■□□□ 1.43
NPHP1O15259 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC24■■□□□ 1.43
NPHP1O15259 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC24■■□□□ 1.43
NPHP1O15259 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC24■■□□□ 1.43
NPHP1O15259 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC24■■□□□ 1.43
NPHP1O15259 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC24■■□□□ 1.43
NPHP1O15259 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC23.99■■□□□ 1.43
NPHP1O15259 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC23.99■■□□□ 1.43
NPHP1O15259 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC23.99■■□□□ 1.43
NPHP1O15259 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC23.99■■□□□ 1.43
NPHP1O15259 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
NPHP1O15259 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
NPHP1O15259 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC23.99■■□□□ 1.43
NPHP1O15259 SPDYE15P-201ENST00000424157 909 ntBASIC23.99■■□□□ 1.43
NPHP1O15259 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC23.99■■□□□ 1.43
NPHP1O15259 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
NPHP1O15259 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC23.99■■□□□ 1.43
NPHP1O15259 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
NPHP1O15259 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC23.99■■□□□ 1.43
NPHP1O15259 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC23.99■■□□□ 1.43
NPHP1O15259 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC23.99■■□□□ 1.43
NPHP1O15259 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC23.98■■□□□ 1.43
NPHP1O15259 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
NPHP1O15259 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
NPHP1O15259 AL691432.2-201ENST00000607222 2038 ntBASIC23.98■■□□□ 1.43
NPHP1O15259 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
NPHP1O15259 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC23.98■■□□□ 1.43
NPHP1O15259 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC23.98■■□□□ 1.43
NPHP1O15259 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
NPHP1O15259 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC23.98■■□□□ 1.43
NPHP1O15259 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC23.98■■□□□ 1.43
NPHP1O15259 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC23.98■■□□□ 1.43
NPHP1O15259 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC23.98■■□□□ 1.43
NPHP1O15259 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC23.98■■□□□ 1.43
NPHP1O15259 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
NPHP1O15259 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC23.98■■□□□ 1.43
NPHP1O15259 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC23.98■■□□□ 1.43
NPHP1O15259 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
NPHP1O15259 DET1-207ENST00000564406 2315 ntTSL 2 BASIC23.98■■□□□ 1.43
NPHP1O15259 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC23.98■■□□□ 1.43
NPHP1O15259 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
NPHP1O15259 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
NPHP1O15259 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC23.97■■□□□ 1.43
NPHP1O15259 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC23.97■■□□□ 1.43
NPHP1O15259 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
NPHP1O15259 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
NPHP1O15259 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
NPHP1O15259 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC23.97■■□□□ 1.43
NPHP1O15259 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC23.97■■□□□ 1.43
NPHP1O15259 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC23.97■■□□□ 1.43
NPHP1O15259 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC23.97■■□□□ 1.43
NPHP1O15259 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC23.97■■□□□ 1.43
NPHP1O15259 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC23.97■■□□□ 1.43
NPHP1O15259 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
NPHP1O15259 HYMAI.1-201ENST00000620949 238 ntBASIC23.97■■□□□ 1.43
Retrieved 100 of 98,524 protein–RNA pairs in 16.6 ms