Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
TRAV40A0A0B4J280 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
TRAV40A0A0B4J280 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC15.55■□□□□ 0.08
TRAV40A0A0B4J280 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
TRAV40A0A0B4J280 SDHAP1-207ENST00000440850 2000 ntBASIC15.55■□□□□ 0.08
TRAV40A0A0B4J280 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC15.55■□□□□ 0.08
TRAV40A0A0B4J280 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC15.55■□□□□ 0.08
TRAV40A0A0B4J280 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
TRAV40A0A0B4J280 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
TRAV40A0A0B4J280 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
TRAV40A0A0B4J280 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC15.54■□□□□ 0.08
TRAV40A0A0B4J280 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
TRAV40A0A0B4J280 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
TRAV40A0A0B4J280 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
TRAV40A0A0B4J280 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC15.54■□□□□ 0.08
TRAV40A0A0B4J280 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
TRAV40A0A0B4J280 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC15.54■□□□□ 0.08
TRAV40A0A0B4J280 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC15.54■□□□□ 0.08
TRAV40A0A0B4J280 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
TRAV40A0A0B4J280 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TRAV40A0A0B4J280 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TRAV40A0A0B4J280 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC15.54■□□□□ 0.08
TRAV40A0A0B4J280 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC15.54■□□□□ 0.08
TRAV40A0A0B4J280 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC15.54■□□□□ 0.08
TRAV40A0A0B4J280 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
TRAV40A0A0B4J280 AL138966.2-201ENST00000621997 464 ntBASIC15.54■□□□□ 0.08
TRAV40A0A0B4J280 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
TRAV40A0A0B4J280 AC141257.4-201ENST00000634557 245 ntBASIC15.54■□□□□ 0.08
TRAV40A0A0B4J280 AC136944.6-201ENST00000634818 245 ntBASIC15.54■□□□□ 0.08
TRAV40A0A0B4J280 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC15.54■□□□□ 0.08
TRAV40A0A0B4J280 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC15.54■□□□□ 0.08
TRAV40A0A0B4J280 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TRAV40A0A0B4J280 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
TRAV40A0A0B4J280 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TRAV40A0A0B4J280 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
TRAV40A0A0B4J280 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TRAV40A0A0B4J280 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC15.54■□□□□ 0.08
TRAV40A0A0B4J280 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC15.54■□□□□ 0.08
TRAV40A0A0B4J280 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC15.53■□□□□ 0.08
TRAV40A0A0B4J280 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV40A0A0B4J280 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC15.53■□□□□ 0.08
TRAV40A0A0B4J280 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV40A0A0B4J280 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV40A0A0B4J280 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV40A0A0B4J280 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV40A0A0B4J280 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV40A0A0B4J280 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
TRAV40A0A0B4J280 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
TRAV40A0A0B4J280 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC15.53■□□□□ 0.08
TRAV40A0A0B4J280 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV40A0A0B4J280 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV40A0A0B4J280 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC15.53■□□□□ 0.08
TRAV40A0A0B4J280 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV40A0A0B4J280 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC15.53■□□□□ 0.08
TRAV40A0A0B4J280 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC15.53■□□□□ 0.08
TRAV40A0A0B4J280 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV40A0A0B4J280 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC15.53■□□□□ 0.08
TRAV40A0A0B4J280 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV40A0A0B4J280 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV40A0A0B4J280 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV40A0A0B4J280 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV40A0A0B4J280 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV40A0A0B4J280 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV40A0A0B4J280 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV40A0A0B4J280 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV40A0A0B4J280 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV40A0A0B4J280 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV40A0A0B4J280 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC15.53■□□□□ 0.08
TRAV40A0A0B4J280 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV40A0A0B4J280 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC15.53■□□□□ 0.08
TRAV40A0A0B4J280 AC092647.4-201ENST00000457211 535 ntBASIC15.53■□□□□ 0.08
TRAV40A0A0B4J280 COX11P1-201ENST00000489116 835 ntBASIC15.53■□□□□ 0.08
TRAV40A0A0B4J280 YBX1P2-201ENST00000489612 999 ntBASIC15.53■□□□□ 0.08
TRAV40A0A0B4J280 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC15.53■□□□□ 0.08
TRAV40A0A0B4J280 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC15.53■□□□□ 0.08
TRAV40A0A0B4J280 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC15.53■□□□□ 0.08
TRAV40A0A0B4J280 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV40A0A0B4J280 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
TRAV40A0A0B4J280 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV40A0A0B4J280 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV40A0A0B4J280 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV40A0A0B4J280 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV40A0A0B4J280 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC15.53■□□□□ 0.08
TRAV40A0A0B4J280 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV40A0A0B4J280 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV40A0A0B4J280 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV40A0A0B4J280 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV40A0A0B4J280 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC15.53■□□□□ 0.08
TRAV40A0A0B4J280 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC15.53■□□□□ 0.08
TRAV40A0A0B4J280 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV40A0A0B4J280 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV40A0A0B4J280 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC15.53■□□□□ 0.08
TRAV40A0A0B4J280 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV40A0A0B4J280 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC15.53■□□□□ 0.08
TRAV40A0A0B4J280 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
TRAV40A0A0B4J280 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC15.52■□□□□ 0.08
TRAV40A0A0B4J280 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC15.52■□□□□ 0.08
TRAV40A0A0B4J280 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
TRAV40A0A0B4J280 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
TRAV40A0A0B4J280 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms