Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 AC119674.1-207ENST00000641355 633 ntBASIC4.17□□□□□ -1.74
LIMCH1Q9UPQ0 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
LIMCH1Q9UPQ0 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
LIMCH1Q9UPQ0 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC4.17□□□□□ -1.74
LIMCH1Q9UPQ0 AL139276.1-201ENST00000311910 1001 ntBASIC4.16□□□□□ -1.74
LIMCH1Q9UPQ0 NACAP2-201ENST00000318548 624 ntBASIC4.16□□□□□ -1.74
LIMCH1Q9UPQ0 MIR30E-201ENST00000362104 92 ntBASIC4.16□□□□□ -1.74
LIMCH1Q9UPQ0 Y_RNA.160-201ENST00000363677 92 ntBASIC4.16□□□□□ -1.74
LIMCH1Q9UPQ0 SNORA24.1-201ENST00000384401 135 ntBASIC4.16□□□□□ -1.74
LIMCH1Q9UPQ0 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC4.16□□□□□ -1.74
LIMCH1Q9UPQ0 RNU6-1068P-201ENST00000410958 103 ntBASIC4.16□□□□□ -1.74
LIMCH1Q9UPQ0 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC4.16□□□□□ -1.74
LIMCH1Q9UPQ0 AL157378.1-201ENST00000424506 265 ntTSL 5 BASIC4.16□□□□□ -1.74
LIMCH1Q9UPQ0 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC4.16□□□□□ -1.74
LIMCH1Q9UPQ0 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC4.16□□□□□ -1.74
LIMCH1Q9UPQ0 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC4.16□□□□□ -1.74
LIMCH1Q9UPQ0 C21orf91-OT1-202ENST00000430815 717 ntTSL 5 BASIC4.16□□□□□ -1.74
LIMCH1Q9UPQ0 RPS29P15-201ENST00000458329 171 ntBASIC4.16□□□□□ -1.74
LIMCH1Q9UPQ0 snoU13.4-201ENST00000458916 104 ntBASIC4.16□□□□□ -1.74
LIMCH1Q9UPQ0 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC4.16□□□□□ -1.74
LIMCH1Q9UPQ0 AC078918.1-201ENST00000498515 228 ntBASIC4.16□□□□□ -1.74
LIMCH1Q9UPQ0 RN7SKP219-201ENST00000516825 296 ntBASIC4.16□□□□□ -1.74
LIMCH1Q9UPQ0 NDUFB9P3-201ENST00000521269 501 ntBASIC4.16□□□□□ -1.74
LIMCH1Q9UPQ0 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC4.16□□□□□ -1.74
LIMCH1Q9UPQ0 AC006518.2-202ENST00000544947 297 ntTSL 2 BASIC4.16□□□□□ -1.74
LIMCH1Q9UPQ0 BNIP3P30-201ENST00000601184 574 ntBASIC4.16□□□□□ -1.74
LIMCH1Q9UPQ0 AC063943.3-201ENST00000615562 356 ntBASIC4.16□□□□□ -1.74
LIMCH1Q9UPQ0 AC006504.8-201ENST00000621046 635 ntBASIC4.16□□□□□ -1.74
LIMCH1Q9UPQ0 AL589994.2-201ENST00000621124 579 ntBASIC4.16□□□□□ -1.74
LIMCH1Q9UPQ0 AC112200.1-201ENST00000625015 234 ntBASIC4.16□□□□□ -1.74
LIMCH1Q9UPQ0 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC4.16□□□□□ -1.74
LIMCH1Q9UPQ0 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
LIMCH1Q9UPQ0 RIOK3P1-201ENST00000418778 1528 ntBASIC4.16□□□□□ -1.74
LIMCH1Q9UPQ0 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC4.15□□□□□ -1.74
LIMCH1Q9UPQ0 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC4.15□□□□□ -1.74
LIMCH1Q9UPQ0 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC4.15□□□□□ -1.74
LIMCH1Q9UPQ0 AC007823.1-201ENST00000569932 1566 ntBASIC4.15□□□□□ -1.74
LIMCH1Q9UPQ0 AC103710.2-202ENST00000641454 2853 ntBASIC4.15□□□□□ -1.74
LIMCH1Q9UPQ0 SNORD9-201ENST00000362566 104 ntBASIC4.15□□□□□ -1.75
LIMCH1Q9UPQ0 RNU6-61P-201ENST00000365528 109 ntBASIC4.15□□□□□ -1.75
LIMCH1Q9UPQ0 RNU6-946P-201ENST00000383878 107 ntBASIC4.15□□□□□ -1.75
LIMCH1Q9UPQ0 RNU6-701P-201ENST00000384059 107 ntBASIC4.15□□□□□ -1.75
LIMCH1Q9UPQ0 RNU6-1029P-201ENST00000384109 107 ntBASIC4.15□□□□□ -1.75
LIMCH1Q9UPQ0 SNORA36C-201ENST00000384289 132 ntBASIC4.15□□□□□ -1.75
LIMCH1Q9UPQ0 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC4.15□□□□□ -1.75
LIMCH1Q9UPQ0 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC4.15□□□□□ -1.75
LIMCH1Q9UPQ0 AL356776.1-201ENST00000406574 447 ntBASIC4.15□□□□□ -1.75
LIMCH1Q9UPQ0 RNU6-193P-201ENST00000410977 107 ntBASIC4.15□□□□□ -1.75
LIMCH1Q9UPQ0 AC114491.1-201ENST00000416095 246 ntBASIC4.15□□□□□ -1.75
LIMCH1Q9UPQ0 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC4.15□□□□□ -1.75
LIMCH1Q9UPQ0 AL513185.2-201ENST00000425543 193 ntBASIC4.15□□□□□ -1.75
LIMCH1Q9UPQ0 RPL7L1P10-201ENST00000427790 463 ntBASIC4.15□□□□□ -1.75
LIMCH1Q9UPQ0 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC4.15□□□□□ -1.75
LIMCH1Q9UPQ0 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC4.15□□□□□ -1.75
LIMCH1Q9UPQ0 CLEC4E-202ENST00000446457 701 ntTSL 3 BASIC4.15□□□□□ -1.75
LIMCH1Q9UPQ0 AC020550.1-201ENST00000447385 163 ntBASIC4.15□□□□□ -1.75
LIMCH1Q9UPQ0 RPS3AP46-201ENST00000448352 682 ntBASIC4.15□□□□□ -1.75
LIMCH1Q9UPQ0 RPS20P20-201ENST00000460498 340 ntBASIC4.15□□□□□ -1.75
LIMCH1Q9UPQ0 HSPE1P6-201ENST00000479457 291 ntBASIC4.15□□□□□ -1.75
LIMCH1Q9UPQ0 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC4.15□□□□□ -1.75
LIMCH1Q9UPQ0 AC004062.1-201ENST00000509926 645 ntBASIC4.15□□□□□ -1.75
LIMCH1Q9UPQ0 AC108078.2-201ENST00000510750 236 ntBASIC4.15□□□□□ -1.75
LIMCH1Q9UPQ0 RN7SKP258-201ENST00000517151 304 ntBASIC4.15□□□□□ -1.75
LIMCH1Q9UPQ0 CENPUP1-201ENST00000526649 1202 ntBASIC4.15□□□□□ -1.75
LIMCH1Q9UPQ0 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC4.15□□□□□ -1.75
LIMCH1Q9UPQ0 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC4.15□□□□□ -1.75
LIMCH1Q9UPQ0 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC4.15□□□□□ -1.75
LIMCH1Q9UPQ0 AC005730.3-201ENST00000583067 366 ntBASIC4.15□□□□□ -1.75
LIMCH1Q9UPQ0 AP001029.3-201ENST00000588063 596 ntBASIC4.15□□□□□ -1.75
LIMCH1Q9UPQ0 RMST_3.1-201ENST00000611651 109 ntBASIC4.15□□□□□ -1.75
LIMCH1Q9UPQ0 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC4.15□□□□□ -1.75
LIMCH1Q9UPQ0 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
LIMCH1Q9UPQ0 API5P2-201ENST00000397055 1498 ntBASIC4.15□□□□□ -1.75
LIMCH1Q9UPQ0 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
LIMCH1Q9UPQ0 MTND4P14-201ENST00000435799 1354 ntBASIC4.14□□□□□ -1.75
LIMCH1Q9UPQ0 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
LIMCH1Q9UPQ0 LRRC39-203ENST00000370138 1466 ntTSL 5 BASIC4.14□□□□□ -1.75
LIMCH1Q9UPQ0 RNU5A-1-201ENST00000362698 116 ntBASIC4.14□□□□□ -1.75
LIMCH1Q9UPQ0 Y_RNA.72-201ENST00000362894 103 ntBASIC4.14□□□□□ -1.75
LIMCH1Q9UPQ0 SNORD115-7-201ENST00000365306 82 ntBASIC4.14□□□□□ -1.75
LIMCH1Q9UPQ0 SMIM11P1-201ENST00000369586 178 ntBASIC4.14□□□□□ -1.75
LIMCH1Q9UPQ0 PARD3-204ENST00000374768 799 ntTSL 3 BASIC4.14□□□□□ -1.75
LIMCH1Q9UPQ0 SNORD37.1-201ENST00000390968 65 ntBASIC4.14□□□□□ -1.75
LIMCH1Q9UPQ0 RNU6-903P-201ENST00000391270 109 ntBASIC4.14□□□□□ -1.75
LIMCH1Q9UPQ0 RAP1BP3-201ENST00000407180 549 ntBASIC4.14□□□□□ -1.75
LIMCH1Q9UPQ0 RNU6-55P-201ENST00000411092 107 ntBASIC4.14□□□□□ -1.75
LIMCH1Q9UPQ0 RNU6-954P-201ENST00000411355 107 ntBASIC4.14□□□□□ -1.75
LIMCH1Q9UPQ0 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
LIMCH1Q9UPQ0 TOMM22P1-201ENST00000418578 312 ntBASIC4.14□□□□□ -1.75
LIMCH1Q9UPQ0 DBIP2-201ENST00000419076 262 ntBASIC4.14□□□□□ -1.75
LIMCH1Q9UPQ0 MTCYBP8-201ENST00000422855 651 ntBASIC4.14□□□□□ -1.75
LIMCH1Q9UPQ0 ZNF863P-201ENST00000426746 417 ntBASIC4.14□□□□□ -1.75
LIMCH1Q9UPQ0 AC079780.1-201ENST00000428259 207 ntBASIC4.14□□□□□ -1.75
LIMCH1Q9UPQ0 AP000907.1-201ENST00000428428 510 ntBASIC4.14□□□□□ -1.75
LIMCH1Q9UPQ0 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC4.14□□□□□ -1.75
LIMCH1Q9UPQ0 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC4.14□□□□□ -1.75
LIMCH1Q9UPQ0 AC098614.3-201ENST00000438957 440 ntBASIC4.14□□□□□ -1.75
LIMCH1Q9UPQ0 RPL21P133-201ENST00000443666 476 ntBASIC4.14□□□□□ -1.75
LIMCH1Q9UPQ0 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC4.14□□□□□ -1.75
LIMCH1Q9UPQ0 RPL23AP31-201ENST00000456160 467 ntBASIC4.14□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 108.2 ms