Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 C5orf63-205ENST00000535381 5680 ntTSL 3 BASIC5.38□□□□□ -1.55
CCDC87Q9NVE4 LINC01689-201ENST00000416218 2007 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
CCDC87Q9NVE4 ZNF645-201ENST00000323684 1519 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
CCDC87Q9NVE4 OBSCN-205ENST00000422127 24060 ntTSL 5 BASIC5.38□□□□□ -1.55
CCDC87Q9NVE4 ATP2C1-205ENST00000504381 3498 ntTSL 2 BASIC5.38□□□□□ -1.55
CCDC87Q9NVE4 AL672167.1-204ENST00000641875 3017 ntBASIC5.37□□□□□ -1.55
CCDC87Q9NVE4 GALNT11-203ENST00000422997 2371 ntTSL 5 BASIC5.37□□□□□ -1.55
CCDC87Q9NVE4 RASSF6-204ENST00000395777 2735 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC87Q9NVE4 CENPE-208ENST00000611174 8260 ntTSL 5 BASIC5.37□□□□□ -1.55
CCDC87Q9NVE4 MEG8-223ENST00000638012 3757 ntTSL 5 BASIC5.37□□□□□ -1.55
CCDC87Q9NVE4 Y_RNA.401-201ENST00000383965 117 ntBASIC5.37□□□□□ -1.55
CCDC87Q9NVE4 RNU6-214P-201ENST00000384130 107 ntBASIC5.37□□□□□ -1.55
CCDC87Q9NVE4 Y_RNA.480-201ENST00000384364 102 ntBASIC5.37□□□□□ -1.55
CCDC87Q9NVE4 RNU6-14P-201ENST00000384630 106 ntBASIC5.37□□□□□ -1.55
CCDC87Q9NVE4 SNORA75.6-201ENST00000391318 127 ntBASIC5.37□□□□□ -1.55
CCDC87Q9NVE4 RNU6-1050P-201ENST00000410388 107 ntBASIC5.37□□□□□ -1.55
CCDC87Q9NVE4 SSXP9-201ENST00000417503 292 ntBASIC5.37□□□□□ -1.55
CCDC87Q9NVE4 MCFD2P1-201ENST00000417812 300 ntBASIC5.37□□□□□ -1.55
CCDC87Q9NVE4 AC079163.1-201ENST00000418416 407 ntTSL 2 BASIC5.37□□□□□ -1.55
CCDC87Q9NVE4 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC5.37□□□□□ -1.55
CCDC87Q9NVE4 MTCYBP10-201ENST00000424905 650 ntBASIC5.37□□□□□ -1.55
CCDC87Q9NVE4 OR2AH1P-201ENST00000425717 928 ntBASIC5.37□□□□□ -1.55
CCDC87Q9NVE4 AC091390.3-201ENST00000426478 338 ntBASIC5.37□□□□□ -1.55
CCDC87Q9NVE4 CYP1B1-AS1-202ENST00000427168 484 ntTSL 4 BASIC5.37□□□□□ -1.55
CCDC87Q9NVE4 AC012442.1-201ENST00000436885 529 ntTSL 4 BASIC5.37□□□□□ -1.55
CCDC87Q9NVE4 RPL23AP46-201ENST00000438548 490 ntBASIC5.37□□□□□ -1.55
CCDC87Q9NVE4 AL359672.1-201ENST00000442302 409 ntBASIC5.37□□□□□ -1.55
CCDC87Q9NVE4 RPS11P1-201ENST00000451072 473 ntBASIC5.37□□□□□ -1.55
CCDC87Q9NVE4 COX7A2-205ENST00000460985 357 ntTSL 2 BASIC5.37□□□□□ -1.55
CCDC87Q9NVE4 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC5.37□□□□□ -1.55
CCDC87Q9NVE4 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC5.37□□□□□ -1.55
CCDC87Q9NVE4 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC5.37□□□□□ -1.55
CCDC87Q9NVE4 SMILR-201ENST00000533992 553 ntTSL 4 BASIC5.37□□□□□ -1.55
CCDC87Q9NVE4 AC006064.5-201ENST00000541782 248 ntBASIC5.37□□□□□ -1.55
CCDC87Q9NVE4 AC026371.1-201ENST00000551867 419 ntBASIC5.37□□□□□ -1.55
CCDC87Q9NVE4 AC022655.2-201ENST00000577280 318 ntBASIC5.37□□□□□ -1.55
CCDC87Q9NVE4 RN7SL435P-201ENST00000584418 282 ntBASIC5.37□□□□□ -1.55
CCDC87Q9NVE4 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC5.37□□□□□ -1.55
CCDC87Q9NVE4 BDH2P1-201ENST00000602288 736 ntBASIC5.37□□□□□ -1.55
CCDC87Q9NVE4 AC006006.1-201ENST00000603082 144 ntBASIC5.37□□□□□ -1.55
CCDC87Q9NVE4 AC012468.1-201ENST00000604888 430 ntBASIC5.37□□□□□ -1.55
CCDC87Q9NVE4 AC018462.2-201ENST00000605375 395 ntBASIC5.37□□□□□ -1.55
CCDC87Q9NVE4 AC011890.2-201ENST00000613393 294 ntBASIC5.37□□□□□ -1.55
CCDC87Q9NVE4 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC5.37□□□□□ -1.55
CCDC87Q9NVE4 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC87Q9NVE4 WDR72-202ENST00000396328 7507 ntAPPRIS P2 TSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC87Q9NVE4 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC87Q9NVE4 ABCA13-204ENST00000435803 17184 ntAPPRIS P2 TSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC87Q9NVE4 C6-201ENST00000263413 3661 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC87Q9NVE4 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC87Q9NVE4 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC5.37□□□□□ -1.55
CCDC87Q9NVE4 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC87Q9NVE4 HSPA8P4-201ENST00000511877 1920 ntBASIC5.36□□□□□ -1.55
CCDC87Q9NVE4 AC083843.3-201ENST00000623679 2186 ntBASIC5.36□□□□□ -1.55
CCDC87Q9NVE4 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC87Q9NVE4 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC5.36□□□□□ -1.55
CCDC87Q9NVE4 WDR63-203ENST00000370596 2905 ntAPPRIS ALT2 TSL 5 BASIC5.36□□□□□ -1.55
CCDC87Q9NVE4 DCDC1-211ENST00000597505 5352 ntAPPRIS ALT2 TSL 5 BASIC5.36□□□□□ -1.55
CCDC87Q9NVE4 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC5.36□□□□□ -1.55
CCDC87Q9NVE4 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC5.36□□□□□ -1.55
CCDC87Q9NVE4 RNU6-76P-201ENST00000384060 104 ntBASIC5.36□□□□□ -1.55
CCDC87Q9NVE4 RNU6-890P-201ENST00000384121 107 ntBASIC5.36□□□□□ -1.55
CCDC87Q9NVE4 RNU6-882P-201ENST00000391025 103 ntBASIC5.36□□□□□ -1.55
CCDC87Q9NVE4 MRPL42P3-201ENST00000401492 326 ntBASIC5.36□□□□□ -1.55
CCDC87Q9NVE4 AL139039.1-201ENST00000401900 692 ntBASIC5.36□□□□□ -1.55
CCDC87Q9NVE4 RNU6-293P-201ENST00000411259 106 ntBASIC5.36□□□□□ -1.55
CCDC87Q9NVE4 AL160275.3-201ENST00000423876 471 ntBASIC5.36□□□□□ -1.55
CCDC87Q9NVE4 HMGB1P27-201ENST00000431429 603 ntBASIC5.36□□□□□ -1.55
CCDC87Q9NVE4 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC5.36□□□□□ -1.55
CCDC87Q9NVE4 RPS26P2-201ENST00000440331 348 ntBASIC5.36□□□□□ -1.55
CCDC87Q9NVE4 TRAPPC2P8-201ENST00000440676 396 ntBASIC5.36□□□□□ -1.55
CCDC87Q9NVE4 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC5.36□□□□□ -1.55
CCDC87Q9NVE4 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC5.36□□□□□ -1.55
CCDC87Q9NVE4 AC104472.2-201ENST00000469035 601 ntBASIC5.36□□□□□ -1.55
CCDC87Q9NVE4 AC117503.1-201ENST00000472241 394 ntBASIC5.36□□□□□ -1.55
CCDC87Q9NVE4 AC096745.1-201ENST00000509945 370 ntBASIC5.36□□□□□ -1.55
CCDC87Q9NVE4 IL7R-208ENST00000511982 612 ntTSL 2 BASIC5.36□□□□□ -1.55
CCDC87Q9NVE4 AC112196.1-201ENST00000515092 832 ntTSL 3 BASIC5.36□□□□□ -1.55
CCDC87Q9NVE4 RNU6-1213P-201ENST00000517075 94 ntBASIC5.36□□□□□ -1.55
CCDC87Q9NVE4 AC009446.1-202ENST00000521131 473 ntTSL 3 BASIC5.36□□□□□ -1.55
CCDC87Q9NVE4 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC5.36□□□□□ -1.55
CCDC87Q9NVE4 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC5.36□□□□□ -1.55
CCDC87Q9NVE4 MIR4680-201ENST00000580906 66 ntBASIC5.36□□□□□ -1.55
CCDC87Q9NVE4 AC084757.4-201ENST00000616350 526 ntBASIC5.36□□□□□ -1.55
CCDC87Q9NVE4 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
CCDC87Q9NVE4 CCT7-217ENST00000626868 249 ntTSL 5 BASIC5.36□□□□□ -1.55
CCDC87Q9NVE4 MTND4P1-201ENST00000457501 1466 ntBASIC5.36□□□□□ -1.55
CCDC87Q9NVE4 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC5.36□□□□□ -1.55
CCDC87Q9NVE4 GABRG2-217ENST00000639384 5360 ntTSL 5 BASIC5.36□□□□□ -1.55
CCDC87Q9NVE4 AL049555.1-201ENST00000562834 1933 ntBASIC5.36□□□□□ -1.55
CCDC87Q9NVE4 XPO4-201ENST00000255305 9921 ntAPPRIS P2 TSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC87Q9NVE4 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC5.35□□□□□ -1.55
CCDC87Q9NVE4 ZNF285-205ENST00000614994 6012 ntAPPRIS P3 TSL 1 (best) BASIC5.35□□□□□ -1.55
CCDC87Q9NVE4 PARP11-203ENST00000427057 4406 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
CCDC87Q9NVE4 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC5.35□□□□□ -1.55
CCDC87Q9NVE4 LIMA1-214ENST00000552783 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC5.35□□□□□ -1.55
CCDC87Q9NVE4 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC5.35□□□□□ -1.55
CCDC87Q9NVE4 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC5.35□□□□□ -1.55
CCDC87Q9NVE4 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
CCDC87Q9NVE4 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 127.3 ms