Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 SCARNA17.2-201ENST00000516334 143 ntBASIC2.59□□□□□ -1.99
TM9SF3Q9HD45 SNORA31.15-201ENST00000516771 132 ntBASIC2.59□□□□□ -1.99
TM9SF3Q9HD45 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC2.59□□□□□ -1.99
TM9SF3Q9HD45 AC060766.3-201ENST00000591442 263 ntBASIC2.59□□□□□ -1.99
TM9SF3Q9HD45 DUXAP3-201ENST00000603616 594 ntBASIC2.59□□□□□ -1.99
TM9SF3Q9HD45 AC011458.1-201ENST00000604034 617 ntBASIC2.59□□□□□ -1.99
TM9SF3Q9HD45 DLEU2_6.1-201ENST00000610536 112 ntBASIC2.59□□□□□ -1.99
TM9SF3Q9HD45 SCARNA17.4-201ENST00000614296 143 ntBASIC2.59□□□□□ -1.99
TM9SF3Q9HD45 HMGB1P24-202ENST00000615653 685 ntBASIC2.59□□□□□ -1.99
TM9SF3Q9HD45 AL445264.1-201ENST00000621719 171 ntBASIC2.59□□□□□ -1.99
TM9SF3Q9HD45 AC025034.2-201ENST00000623264 286 ntBASIC2.59□□□□□ -1.99
TM9SF3Q9HD45 FP475955.2-201ENST00000623720 458 ntTSL 2 BASIC2.59□□□□□ -1.99
TM9SF3Q9HD45 AC231657.1-201ENST00000624313 397 ntBASIC2.59□□□□□ -1.99
TM9SF3Q9HD45 CTSLP2-204ENST00000629029 392 ntBASIC2.59□□□□□ -1.99
TM9SF3Q9HD45 AC116618.1-201ENST00000634617 774 ntBASIC2.59□□□□□ -1.99
TM9SF3Q9HD45 SLC10A5P1-201ENST00000379063 1306 ntBASIC2.59□□□□□ -2
TM9SF3Q9HD45 MTND4P27-201ENST00000450813 1354 ntBASIC2.59□□□□□ -2
TM9SF3Q9HD45 AL138713.1-201ENST00000624026 2130 ntBASIC2.59□□□□□ -2
TM9SF3Q9HD45 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC2.58□□□□□ -2
TM9SF3Q9HD45 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.58□□□□□ -2
TM9SF3Q9HD45 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC2.58□□□□□ -2
TM9SF3Q9HD45 MIR6073-201ENST00000352083 89 ntBASIC2.58□□□□□ -2
TM9SF3Q9HD45 RNU6-884P-201ENST00000363889 107 ntBASIC2.58□□□□□ -2
TM9SF3Q9HD45 Y_RNA.192-201ENST00000363977 102 ntBASIC2.58□□□□□ -2
TM9SF3Q9HD45 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC2.58□□□□□ -2
TM9SF3Q9HD45 DEFA7P-201ENST00000382676 285 ntBASIC2.58□□□□□ -2
TM9SF3Q9HD45 RNU6-750P-201ENST00000390946 107 ntBASIC2.58□□□□□ -2
TM9SF3Q9HD45 RN7SKP140-201ENST00000411196 284 ntBASIC2.58□□□□□ -2
TM9SF3Q9HD45 RNU6-516P-201ENST00000411381 104 ntBASIC2.58□□□□□ -2
TM9SF3Q9HD45 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC2.58□□□□□ -2
TM9SF3Q9HD45 AC096649.2-201ENST00000416186 393 ntBASIC2.58□□□□□ -2
TM9SF3Q9HD45 NPM1P11-201ENST00000417106 855 ntBASIC2.58□□□□□ -2
TM9SF3Q9HD45 AL136980.1-201ENST00000426764 543 ntTSL 3 BASIC2.58□□□□□ -2
TM9SF3Q9HD45 LINC01611-201ENST00000428896 477 ntTSL 5 BASIC2.58□□□□□ -2
TM9SF3Q9HD45 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC2.58□□□□□ -2
TM9SF3Q9HD45 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC2.58□□□□□ -2
TM9SF3Q9HD45 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC2.58□□□□□ -2
TM9SF3Q9HD45 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC2.58□□□□□ -2
TM9SF3Q9HD45 ZNF886P-201ENST00000450781 723 ntBASIC2.58□□□□□ -2
TM9SF3Q9HD45 GRM7-AS3-208ENST00000455623 947 ntTSL 3 BASIC2.58□□□□□ -2
TM9SF3Q9HD45 PCDH9-AS4-201ENST00000456459 436 ntTSL 3 BASIC2.58□□□□□ -2
TM9SF3Q9HD45 USP9YP25-201ENST00000457708 443 ntBASIC2.58□□□□□ -2
TM9SF3Q9HD45 LRRC70-203ENST00000491184 703 ntTSL 3 BASIC2.58□□□□□ -2
TM9SF3Q9HD45 AC112695.1-201ENST00000504213 592 ntTSL 2 BASIC2.58□□□□□ -2
TM9SF3Q9HD45 YWHAEP4-201ENST00000505390 198 ntBASIC2.58□□□□□ -2
TM9SF3Q9HD45 AC021146.8-201ENST00000507455 733 ntBASIC2.58□□□□□ -2
TM9SF3Q9HD45 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC2.58□□□□□ -2
TM9SF3Q9HD45 AC008549.1-201ENST00000512900 643 ntBASIC2.58□□□□□ -2
TM9SF3Q9HD45 AC110296.1-201ENST00000515680 341 ntTSL 3 BASIC2.58□□□□□ -2
TM9SF3Q9HD45 NRON-201ENST00000517270 370 ntBASIC2.58□□□□□ -2
TM9SF3Q9HD45 AP003122.3-201ENST00000526316 255 ntBASIC2.58□□□□□ -2
TM9SF3Q9HD45 AC090857.2-201ENST00000526362 723 ntTSL 2 BASIC2.58□□□□□ -2
TM9SF3Q9HD45 AL049838.1-201ENST00000563647 981 ntBASIC2.58□□□□□ -2
TM9SF3Q9HD45 MIR4635-201ENST00000583759 79 ntBASIC2.58□□□□□ -2
TM9SF3Q9HD45 ABBA01006766.1-201ENST00000584728 294 ntBASIC2.58□□□□□ -2
TM9SF3Q9HD45 AP001269.3-201ENST00000588718 329 ntBASIC2.58□□□□□ -2
TM9SF3Q9HD45 MTCO2P2-201ENST00000591258 225 ntBASIC2.58□□□□□ -2
TM9SF3Q9HD45 AC013562.2-201ENST00000611632 603 ntBASIC2.58□□□□□ -2
TM9SF3Q9HD45 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.58□□□□□ -2
TM9SF3Q9HD45 GMFB-210ENST00000628554 639 ntTSL 4 BASIC2.58□□□□□ -2
TM9SF3Q9HD45 AC106754.1-201ENST00000562632 1513 ntBASIC2.58□□□□□ -2
TM9SF3Q9HD45 RNU4-68P-201ENST00000364314 141 ntBASIC2.57□□□□□ -2
TM9SF3Q9HD45 RNU6-1083P-201ENST00000384022 107 ntBASIC2.57□□□□□ -2
TM9SF3Q9HD45 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.57□□□□□ -2
TM9SF3Q9HD45 RPL23AP29-201ENST00000397284 453 ntBASIC2.57□□□□□ -2
TM9SF3Q9HD45 AL513331.1-201ENST00000411908 397 ntBASIC2.57□□□□□ -2
TM9SF3Q9HD45 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC2.57□□□□□ -2
TM9SF3Q9HD45 MTATP6P20-201ENST00000414147 562 ntBASIC2.57□□□□□ -2
TM9SF3Q9HD45 USP9YP13-201ENST00000417797 480 ntBASIC2.57□□□□□ -2
TM9SF3Q9HD45 AL138775.1-201ENST00000429539 575 ntTSL 1 (best) BASIC2.57□□□□□ -2
TM9SF3Q9HD45 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC2.57□□□□□ -2
TM9SF3Q9HD45 LINC01546-201ENST00000457435 674 ntTSL 2 BASIC2.57□□□□□ -2
TM9SF3Q9HD45 RNU7-136P-201ENST00000458819 69 ntBASIC2.57□□□□□ -2
TM9SF3Q9HD45 WDR78-207ENST00000488333 613 ntTSL 3 BASIC2.57□□□□□ -2
TM9SF3Q9HD45 SRIP1-201ENST00000489235 288 ntBASIC2.57□□□□□ -2
TM9SF3Q9HD45 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC2.57□□□□□ -2
TM9SF3Q9HD45 ANXA2P1-201ENST00000505539 926 ntBASIC2.57□□□□□ -2
TM9SF3Q9HD45 AC022447.3-201ENST00000506865 495 ntBASIC2.57□□□□□ -2
TM9SF3Q9HD45 AC098868.1-201ENST00000512628 624 ntTSL 2 BASIC2.57□□□□□ -2
TM9SF3Q9HD45 RNA5SP320-201ENST00000516263 124 ntBASIC2.57□□□□□ -2
TM9SF3Q9HD45 OR4R1P-201ENST00000529879 463 ntBASIC2.57□□□□□ -2
TM9SF3Q9HD45 OR6C7P-201ENST00000547875 934 ntBASIC2.57□□□□□ -2
TM9SF3Q9HD45 AC079411.1-201ENST00000565441 795 ntTSL 1 (best) BASIC2.57□□□□□ -2
TM9SF3Q9HD45 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC2.57□□□□□ -2
TM9SF3Q9HD45 AC008277.1-203ENST00000594921 1149 ntTSL 5 BASIC2.57□□□□□ -2
TM9SF3Q9HD45 AC021749.1-201ENST00000604322 607 ntBASIC2.57□□□□□ -2
TM9SF3Q9HD45 AC007621.1-201ENST00000604544 437 ntBASIC2.57□□□□□ -2
TM9SF3Q9HD45 AC106052.1-201ENST00000608029 497 ntBASIC2.57□□□□□ -2
TM9SF3Q9HD45 AC068057.2-201ENST00000624047 895 ntBASIC2.57□□□□□ -2
TM9SF3Q9HD45 AL359757.2-201ENST00000624309 274 ntBASIC2.57□□□□□ -2
TM9SF3Q9HD45 Clostridiales-1.2-201ENST00000636724 160 ntBASIC2.57□□□□□ -2
TM9SF3Q9HD45 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC2.57□□□□□ -2
TM9SF3Q9HD45 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.56□□□□□ -2
TM9SF3Q9HD45 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.56□□□□□ -2
TM9SF3Q9HD45 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
TM9SF3Q9HD45 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC2.56□□□□□ -2
TM9SF3Q9HD45 RNU1-52P-201ENST00000384190 164 ntBASIC2.56□□□□□ -2
TM9SF3Q9HD45 RNU6-906P-201ENST00000384700 70 ntBASIC2.56□□□□□ -2
TM9SF3Q9HD45 MIR27B-201ENST00000385129 97 ntBASIC2.56□□□□□ -2
TM9SF3Q9HD45 TXNP7-201ENST00000406296 293 ntBASIC2.56□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 142.3 ms