Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 AC123904.3-201ENST00000547218 814 ntBASIC3.34□□□□□ -1.87
PCDH9Q9HC56 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC3.34□□□□□ -1.87
PCDH9Q9HC56 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC3.34□□□□□ -1.87
PCDH9Q9HC56 AC093838.1-201ENST00000613014 469 ntBASIC3.34□□□□□ -1.87
PCDH9Q9HC56 AL157817.1-201ENST00000614264 790 ntBASIC3.34□□□□□ -1.87
PCDH9Q9HC56 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.34□□□□□ -1.87
PCDH9Q9HC56 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.34□□□□□ -1.87
PCDH9Q9HC56 AC009975.2-201ENST00000635306 1429 ntTSL 5 BASIC3.34□□□□□ -1.88
PCDH9Q9HC56 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.34□□□□□ -1.88
PCDH9Q9HC56 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.34□□□□□ -1.88
PCDH9Q9HC56 AC004925.1-201ENST00000624256 2706 ntBASIC3.34□□□□□ -1.88
PCDH9Q9HC56 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC3.33□□□□□ -1.88
PCDH9Q9HC56 DDX10P1-201ENST00000448545 1933 ntBASIC3.33□□□□□ -1.88
PCDH9Q9HC56 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC3.33□□□□□ -1.88
PCDH9Q9HC56 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC3.33□□□□□ -1.88
PCDH9Q9HC56 OR4G2P-201ENST00000328113 903 ntBASIC3.33□□□□□ -1.88
PCDH9Q9HC56 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
PCDH9Q9HC56 SNORD56.2-201ENST00000363242 71 ntBASIC3.33□□□□□ -1.88
PCDH9Q9HC56 RNU6-882P-201ENST00000391025 103 ntBASIC3.33□□□□□ -1.88
PCDH9Q9HC56 RNU6-780P-201ENST00000391030 104 ntBASIC3.33□□□□□ -1.88
PCDH9Q9HC56 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
PCDH9Q9HC56 RPL21P24-201ENST00000413752 448 ntBASIC3.33□□□□□ -1.88
PCDH9Q9HC56 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC3.33□□□□□ -1.88
PCDH9Q9HC56 MTCYBP5-201ENST00000423752 1135 ntBASIC3.33□□□□□ -1.88
PCDH9Q9HC56 LINC02526-201ENST00000424162 419 ntTSL 2 BASIC3.33□□□□□ -1.88
PCDH9Q9HC56 OR2AS1P-201ENST00000427827 319 ntBASIC3.33□□□□□ -1.88
PCDH9Q9HC56 UBE2V1P8-201ENST00000437166 265 ntBASIC3.33□□□□□ -1.88
PCDH9Q9HC56 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC3.33□□□□□ -1.88
PCDH9Q9HC56 MTCO2P29-201ENST00000465212 189 ntBASIC3.33□□□□□ -1.88
PCDH9Q9HC56 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC3.33□□□□□ -1.88
PCDH9Q9HC56 RNU6-390P-201ENST00000516259 103 ntBASIC3.33□□□□□ -1.88
PCDH9Q9HC56 SCARNA24.1-201ENST00000516465 137 ntBASIC3.33□□□□□ -1.88
PCDH9Q9HC56 FAM60DP-201ENST00000524174 632 ntBASIC3.33□□□□□ -1.88
PCDH9Q9HC56 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC3.33□□□□□ -1.88
PCDH9Q9HC56 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
PCDH9Q9HC56 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC3.33□□□□□ -1.88
PCDH9Q9HC56 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC3.33□□□□□ -1.88
PCDH9Q9HC56 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC3.33□□□□□ -1.88
PCDH9Q9HC56 ZNF519P2-201ENST00000557032 169 ntBASIC3.33□□□□□ -1.88
PCDH9Q9HC56 AC037471.2-201ENST00000564941 598 ntBASIC3.33□□□□□ -1.88
PCDH9Q9HC56 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC3.33□□□□□ -1.88
PCDH9Q9HC56 AC068944.2-201ENST00000610373 403 ntBASIC3.33□□□□□ -1.88
PCDH9Q9HC56 AL591516.1-201ENST00000611326 274 ntBASIC3.33□□□□□ -1.88
PCDH9Q9HC56 AC090517.2-201ENST00000614966 680 ntBASIC3.33□□□□□ -1.88
PCDH9Q9HC56 AC084757.4-201ENST00000616350 526 ntBASIC3.33□□□□□ -1.88
PCDH9Q9HC56 U4.5-201ENST00000617137 123 ntBASIC3.33□□□□□ -1.88
PCDH9Q9HC56 AC244100.1-202ENST00000621554 382 ntBASIC3.33□□□□□ -1.88
PCDH9Q9HC56 AL353748.2-201ENST00000622148 471 ntBASIC3.33□□□□□ -1.88
PCDH9Q9HC56 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.33□□□□□ -1.88
PCDH9Q9HC56 ELF2P3-201ENST00000445099 1506 ntBASIC3.33□□□□□ -1.88
PCDH9Q9HC56 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
PCDH9Q9HC56 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
PCDH9Q9HC56 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC3.32□□□□□ -1.88
PCDH9Q9HC56 RNA5SP72-201ENST00000364442 117 ntBASIC3.32□□□□□ -1.88
PCDH9Q9HC56 Y_RNA.381-201ENST00000365666 102 ntBASIC3.32□□□□□ -1.88
PCDH9Q9HC56 RNU6-39P-201ENST00000384344 107 ntBASIC3.32□□□□□ -1.88
PCDH9Q9HC56 MIR181A1-201ENST00000385026 110 ntBASIC3.32□□□□□ -1.88
PCDH9Q9HC56 FGFR1OP2P1-201ENST00000395943 500 ntBASIC3.32□□□□□ -1.88
PCDH9Q9HC56 AL109755.1-201ENST00000401791 649 ntBASIC3.32□□□□□ -1.88
PCDH9Q9HC56 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.32□□□□□ -1.88
PCDH9Q9HC56 MTND1P23-201ENST00000416931 372 ntBASIC3.32□□□□□ -1.88
PCDH9Q9HC56 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC3.32□□□□□ -1.88
PCDH9Q9HC56 TRIAP1P1-201ENST00000427062 225 ntBASIC3.32□□□□□ -1.88
PCDH9Q9HC56 MTND3P21-201ENST00000433774 331 ntBASIC3.32□□□□□ -1.88
PCDH9Q9HC56 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC3.32□□□□□ -1.88
PCDH9Q9HC56 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
PCDH9Q9HC56 AL121769.1-201ENST00000469473 401 ntBASIC3.32□□□□□ -1.88
PCDH9Q9HC56 AC092989.1-201ENST00000481235 277 ntBASIC3.32□□□□□ -1.88
PCDH9Q9HC56 AC079382.1-201ENST00000493346 557 ntBASIC3.32□□□□□ -1.88
PCDH9Q9HC56 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
PCDH9Q9HC56 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC3.32□□□□□ -1.88
PCDH9Q9HC56 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC3.32□□□□□ -1.88
PCDH9Q9HC56 AC105914.1-201ENST00000511798 226 ntBASIC3.32□□□□□ -1.88
PCDH9Q9HC56 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC3.32□□□□□ -1.88
PCDH9Q9HC56 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC3.32□□□□□ -1.88
PCDH9Q9HC56 AC011979.2-201ENST00000527568 352 ntBASIC3.32□□□□□ -1.88
PCDH9Q9HC56 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC3.32□□□□□ -1.88
PCDH9Q9HC56 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC3.32□□□□□ -1.88
PCDH9Q9HC56 FAM60BP-201ENST00000578364 658 ntBASIC3.32□□□□□ -1.88
PCDH9Q9HC56 AC098848.2-201ENST00000588023 330 ntBASIC3.32□□□□□ -1.88
PCDH9Q9HC56 AF038458.1-201ENST00000588406 262 ntBASIC3.32□□□□□ -1.88
PCDH9Q9HC56 AC012507.3-201ENST00000603556 477 ntBASIC3.32□□□□□ -1.88
PCDH9Q9HC56 AL391646.1-201ENST00000603860 190 ntBASIC3.32□□□□□ -1.88
PCDH9Q9HC56 AC004067.1-201ENST00000608733 700 ntBASIC3.32□□□□□ -1.88
PCDH9Q9HC56 AC103710.2-201ENST00000609912 942 ntBASIC3.32□□□□□ -1.88
PCDH9Q9HC56 TUG1_2.1-201ENST00000614234 87 ntBASIC3.32□□□□□ -1.88
PCDH9Q9HC56 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC3.32□□□□□ -1.88
PCDH9Q9HC56 NANOGNB-202ENST00000640040 824 ntAPPRIS ALT2 TSL 5 BASIC3.32□□□□□ -1.88
PCDH9Q9HC56 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.32□□□□□ -1.88
PCDH9Q9HC56 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC3.32□□□□□ -1.88
PCDH9Q9HC56 AF117829.1-206ENST00000621883 3802 ntBASIC3.32□□□□□ -1.88
PCDH9Q9HC56 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
PCDH9Q9HC56 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC3.32□□□□□ -1.88
PCDH9Q9HC56 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
PCDH9Q9HC56 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
PCDH9Q9HC56 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC3.31□□□□□ -1.88
PCDH9Q9HC56 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC3.31□□□□□ -1.88
PCDH9Q9HC56 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
PCDH9Q9HC56 RNU6-1103P-201ENST00000384150 107 ntBASIC3.31□□□□□ -1.88
PCDH9Q9HC56 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC3.31□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 112.2 ms