Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 BTBD10P1-201ENST00000549824 1352 ntBASIC5.29□□□□□ -1.56
NPAS3Q8IXF0 ARHGAP5-210ENST00000556611 4824 ntAPPRIS ALT1 TSL 5 BASIC5.28□□□□□ -1.56
NPAS3Q8IXF0 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC5.28□□□□□ -1.56
NPAS3Q8IXF0 AC004158.1-201ENST00000564508 4319 ntBASIC5.28□□□□□ -1.56
NPAS3Q8IXF0 NR3C2-202ENST00000344721 5712 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
NPAS3Q8IXF0 Y_RNA.75-201ENST00000362927 97 ntBASIC5.28□□□□□ -1.56
NPAS3Q8IXF0 RNU6-1226P-201ENST00000384317 107 ntBASIC5.28□□□□□ -1.56
NPAS3Q8IXF0 SNORA26.2-201ENST00000390922 122 ntBASIC5.28□□□□□ -1.56
NPAS3Q8IXF0 SNORA46.1-201ENST00000391069 153 ntBASIC5.28□□□□□ -1.56
NPAS3Q8IXF0 RPS16P5-201ENST00000406501 404 ntBASIC5.28□□□□□ -1.56
NPAS3Q8IXF0 RNA5SP113-201ENST00000410486 84 ntBASIC5.28□□□□□ -1.56
NPAS3Q8IXF0 RNY4P29-201ENST00000410801 97 ntBASIC5.28□□□□□ -1.56
NPAS3Q8IXF0 GPS2P1-201ENST00000411761 986 ntBASIC5.28□□□□□ -1.56
NPAS3Q8IXF0 AC119751.6-201ENST00000416712 186 ntBASIC5.28□□□□□ -1.56
NPAS3Q8IXF0 AL358176.3-201ENST00000420757 454 ntBASIC5.28□□□□□ -1.56
NPAS3Q8IXF0 RPL21P40-201ENST00000428586 483 ntBASIC5.28□□□□□ -1.56
NPAS3Q8IXF0 AC022022.1-201ENST00000430304 178 ntBASIC5.28□□□□□ -1.56
NPAS3Q8IXF0 SPATA13-AS1-201ENST00000430733 433 ntTSL 3 BASIC5.28□□□□□ -1.56
NPAS3Q8IXF0 IGHV5-78-201ENST00000450948 295 ntBASIC5.28□□□□□ -1.56
NPAS3Q8IXF0 TOMM22P6-201ENST00000465035 409 ntBASIC5.28□□□□□ -1.56
NPAS3Q8IXF0 AC010683.1-201ENST00000473673 378 ntBASIC5.28□□□□□ -1.56
NPAS3Q8IXF0 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC5.28□□□□□ -1.56
NPAS3Q8IXF0 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC5.28□□□□□ -1.56
NPAS3Q8IXF0 SNORA70.11-201ENST00000515987 138 ntBASIC5.28□□□□□ -1.56
NPAS3Q8IXF0 SNORA70.13-201ENST00000516116 138 ntBASIC5.28□□□□□ -1.56
NPAS3Q8IXF0 RNU6-390P-201ENST00000516259 103 ntBASIC5.28□□□□□ -1.56
NPAS3Q8IXF0 RN7SKP272-201ENST00000516988 232 ntBASIC5.28□□□□□ -1.56
NPAS3Q8IXF0 ATP5F1P5-201ENST00000526403 760 ntBASIC5.28□□□□□ -1.56
NPAS3Q8IXF0 AL132712.2-201ENST00000556653 127 ntTSL 3 BASIC5.28□□□□□ -1.56
NPAS3Q8IXF0 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC5.28□□□□□ -1.56
NPAS3Q8IXF0 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC5.28□□□□□ -1.56
NPAS3Q8IXF0 TCF4-290ENST00000638154 7801 ntAPPRIS ALT1 TSL 5 BASIC5.28□□□□□ -1.56
NPAS3Q8IXF0 PTK2-213ENST00000519465 3279 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
NPAS3Q8IXF0 AL158066.1-201ENST00000451298 3796 ntTSL 2 BASIC5.28□□□□□ -1.56
NPAS3Q8IXF0 AHCTF1-201ENST00000326225 8633 ntAPPRIS P2 TSL 1 (best) BASIC5.28□□□□□ -1.56
NPAS3Q8IXF0 SCARNA15-201ENST00000607520 4325 ntBASIC5.28□□□□□ -1.56
NPAS3Q8IXF0 MECOM-201ENST00000264674 4900 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
NPAS3Q8IXF0 AL365440.1-201ENST00000436135 2167 ntBASIC5.28□□□□□ -1.56
NPAS3Q8IXF0 OR56A4-204ENST00000641835 3613 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
NPAS3Q8IXF0 POT1-AS1-205ENST00000453342 3252 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
NPAS3Q8IXF0 RBM5-214ENST00000469838 2716 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
NPAS3Q8IXF0 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC5.27□□□□□ -1.57
NPAS3Q8IXF0 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC5.27□□□□□ -1.57
NPAS3Q8IXF0 AC010733.1-201ENST00000451515 401 ntBASIC5.27□□□□□ -1.57
NPAS3Q8IXF0 DSE-204ENST00000452085 10586 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
NPAS3Q8IXF0 RPL23AP3-201ENST00000453844 468 ntBASIC5.27□□□□□ -1.57
NPAS3Q8IXF0 LINC02490-201ENST00000559915 601 ntTSL 3 BASIC5.27□□□□□ -1.57
NPAS3Q8IXF0 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
NPAS3Q8IXF0 AC005899.1-201ENST00000584125 563 ntTSL 5 BASIC5.27□□□□□ -1.57
NPAS3Q8IXF0 MIR7853-201ENST00000584820 132 ntBASIC5.27□□□□□ -1.57
NPAS3Q8IXF0 RPL23AP78-201ENST00000599928 470 ntBASIC5.27□□□□□ -1.57
NPAS3Q8IXF0 AC009314.1-201ENST00000603871 304 ntBASIC5.27□□□□□ -1.57
NPAS3Q8IXF0 AL391358.1-201ENST00000605342 190 ntBASIC5.27□□□□□ -1.57
NPAS3Q8IXF0 AC099506.2-201ENST00000623074 221 ntBASIC5.27□□□□□ -1.57
NPAS3Q8IXF0 SPATA1-206ENST00000490879 2888 ntAPPRIS P1 TSL 5 BASIC5.27□□□□□ -1.57
NPAS3Q8IXF0 CPNE4-214ENST00000617767 3556 ntTSL 2 BASIC5.27□□□□□ -1.57
NPAS3Q8IXF0 C3orf58-202ENST00000441925 3260 ntTSL 2 BASIC5.27□□□□□ -1.57
NPAS3Q8IXF0 KIAA0408-204ENST00000483725 3284 ntAPPRIS P2 TSL 5 BASIC5.27□□□□□ -1.57
NPAS3Q8IXF0 RALGAPB-202ENST00000397040 8435 ntAPPRIS P3 TSL 1 (best) BASIC5.27□□□□□ -1.57
NPAS3Q8IXF0 STAG2-203ENST00000371145 4393 ntAPPRIS ALT1 TSL 1 (best) BASIC5.27□□□□□ -1.57
NPAS3Q8IXF0 DPP8-203ENST00000341861 8699 ntAPPRIS P4 TSL 2 BASIC5.26□□□□□ -1.57
NPAS3Q8IXF0 GHR-207ENST00000537449 4419 ntAPPRIS P1 TSL 5 BASIC5.26□□□□□ -1.57
NPAS3Q8IXF0 KMT2D-201ENST00000301067 19419 ntAPPRIS P1 TSL 5 BASIC5.26□□□□□ -1.57
NPAS3Q8IXF0 AP001029.2-203ENST00000589795 4910 ntBASIC5.26□□□□□ -1.57
NPAS3Q8IXF0 CASC1-204ENST00000395990 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC5.26□□□□□ -1.57
NPAS3Q8IXF0 CAV1-205ENST00000405348 2443 ntAPPRIS ALT1 TSL 5 BASIC5.26□□□□□ -1.57
NPAS3Q8IXF0 DYRK1A-202ENST00000339659 8654 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
NPAS3Q8IXF0 APAF1-205ENST00000547045 3744 ntAPPRIS ALT1 TSL 1 (best) BASIC5.26□□□□□ -1.57
NPAS3Q8IXF0 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
NPAS3Q8IXF0 RNU6-222P-201ENST00000362438 107 ntBASIC5.26□□□□□ -1.57
NPAS3Q8IXF0 RNA5SP191-201ENST00000362585 102 ntBASIC5.26□□□□□ -1.57
NPAS3Q8IXF0 RNU6-199P-201ENST00000362954 107 ntBASIC5.26□□□□□ -1.57
NPAS3Q8IXF0 Y_RNA.324-201ENST00000365165 102 ntBASIC5.26□□□□□ -1.57
NPAS3Q8IXF0 RNU6-211P-201ENST00000384047 107 ntBASIC5.26□□□□□ -1.57
NPAS3Q8IXF0 MIR578-201ENST00000384828 96 ntBASIC5.26□□□□□ -1.57
NPAS3Q8IXF0 TRAV16-201ENST00000390444 329 ntAPPRIS P1 BASIC5.26□□□□□ -1.57
NPAS3Q8IXF0 AC069218.2-201ENST00000411665 344 ntBASIC5.26□□□□□ -1.57
NPAS3Q8IXF0 CTSL3P-202ENST00000412179 788 ntBASIC5.26□□□□□ -1.57
NPAS3Q8IXF0 AF186996.5-201ENST00000418098 904 ntBASIC5.26□□□□□ -1.57
NPAS3Q8IXF0 RN7SL443P-201ENST00000464331 290 ntBASIC5.26□□□□□ -1.57
NPAS3Q8IXF0 RN7SL814P-201ENST00000487715 300 ntBASIC5.26□□□□□ -1.57
NPAS3Q8IXF0 AL160314.1-201ENST00000490836 438 ntBASIC5.26□□□□□ -1.57
NPAS3Q8IXF0 FCF1P8-201ENST00000510322 597 ntBASIC5.26□□□□□ -1.57
NPAS3Q8IXF0 RNU4ATAC18P-201ENST00000516179 126 ntBASIC5.26□□□□□ -1.57
NPAS3Q8IXF0 RN7SKP60-201ENST00000516985 239 ntBASIC5.26□□□□□ -1.57
NPAS3Q8IXF0 RNU6-537P-201ENST00000517277 103 ntBASIC5.26□□□□□ -1.57
NPAS3Q8IXF0 SUMO2P18-201ENST00000518873 252 ntBASIC5.26□□□□□ -1.57
NPAS3Q8IXF0 AC091163.1-201ENST00000524012 605 ntTSL 4 BASIC5.26□□□□□ -1.57
NPAS3Q8IXF0 RGS5-208ENST00000530507 851 ntAPPRIS ALT1 TSL 3 BASIC5.26□□□□□ -1.57
NPAS3Q8IXF0 AC006206.2-202ENST00000537714 648 ntTSL 5 BASIC5.26□□□□□ -1.57
NPAS3Q8IXF0 AP002383.3-201ENST00000545958 593 ntTSL 4 BASIC5.26□□□□□ -1.57
NPAS3Q8IXF0 AL645944.1-201ENST00000603857 493 ntBASIC5.26□□□□□ -1.57
NPAS3Q8IXF0 MIR8076-201ENST00000611401 83 ntBASIC5.26□□□□□ -1.57
NPAS3Q8IXF0 SENP1-205ENST00000549595 1932 ntAPPRIS ALT1 TSL 5 BASIC5.26□□□□□ -1.57
NPAS3Q8IXF0 NKRF-202ENST00000371527 3741 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
NPAS3Q8IXF0 N4BP2L2-IT2-201ENST00000629393 4890 ntBASIC5.26□□□□□ -1.57
NPAS3Q8IXF0 ACE2-201ENST00000252519 3393 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
NPAS3Q8IXF0 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
NPAS3Q8IXF0 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
NPAS3Q8IXF0 SCN2A-207ENST00000631182 8430 ntAPPRIS ALT1 TSL 5 BASIC5.25□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 94.2 ms