Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC4.12□□□□□ -1.75
VPS53Q5VIR6 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
VPS53Q5VIR6 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
VPS53Q5VIR6 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC4.12□□□□□ -1.75
VPS53Q5VIR6 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
VPS53Q5VIR6 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
VPS53Q5VIR6 AC073544.1-201ENST00000600110 1595 ntBASIC4.12□□□□□ -1.75
VPS53Q5VIR6 Y_RNA.70-201ENST00000362886 110 ntBASIC4.12□□□□□ -1.75
VPS53Q5VIR6 RNY3P3-201ENST00000363816 102 ntBASIC4.12□□□□□ -1.75
VPS53Q5VIR6 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC4.12□□□□□ -1.75
VPS53Q5VIR6 HMGN1P24-201ENST00000412282 298 ntBASIC4.12□□□□□ -1.75
VPS53Q5VIR6 BX323014.1-201ENST00000412876 237 ntBASIC4.12□□□□□ -1.75
VPS53Q5VIR6 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC4.12□□□□□ -1.75
VPS53Q5VIR6 MRPL50P2-201ENST00000416821 482 ntBASIC4.12□□□□□ -1.75
VPS53Q5VIR6 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC4.12□□□□□ -1.75
VPS53Q5VIR6 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC4.12□□□□□ -1.75
VPS53Q5VIR6 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC4.12□□□□□ -1.75
VPS53Q5VIR6 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC4.12□□□□□ -1.75
VPS53Q5VIR6 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC4.12□□□□□ -1.75
VPS53Q5VIR6 AL159987.2-201ENST00000432754 307 ntBASIC4.12□□□□□ -1.75
VPS53Q5VIR6 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC4.12□□□□□ -1.75
VPS53Q5VIR6 SEPT14P3-201ENST00000439401 183 ntBASIC4.12□□□□□ -1.75
VPS53Q5VIR6 RAC1P7-201ENST00000445367 377 ntBASIC4.12□□□□□ -1.75
VPS53Q5VIR6 AL732372.2-207ENST00000445840 183 ntBASIC4.12□□□□□ -1.75
VPS53Q5VIR6 SEPT14P2-201ENST00000453405 183 ntBASIC4.12□□□□□ -1.75
VPS53Q5VIR6 RPL23AP31-201ENST00000456160 467 ntBASIC4.12□□□□□ -1.75
VPS53Q5VIR6 RNU6-261P-201ENST00000459506 102 ntBASIC4.12□□□□□ -1.75
VPS53Q5VIR6 NIPA2P2-201ENST00000496376 1083 ntBASIC4.12□□□□□ -1.75
VPS53Q5VIR6 SLC25A15P5-201ENST00000508033 253 ntBASIC4.12□□□□□ -1.75
VPS53Q5VIR6 SEPT14P4-201ENST00000513445 186 ntBASIC4.12□□□□□ -1.75
VPS53Q5VIR6 RNU6-410P-201ENST00000517006 107 ntBASIC4.12□□□□□ -1.75
VPS53Q5VIR6 RNU6-1220P-201ENST00000517126 108 ntBASIC4.12□□□□□ -1.75
VPS53Q5VIR6 NDUFB9P3-201ENST00000521269 501 ntBASIC4.12□□□□□ -1.75
VPS53Q5VIR6 FO082796.1-201ENST00000523795 183 ntBASIC4.12□□□□□ -1.75
VPS53Q5VIR6 AC011602.1-201ENST00000546484 331 ntBASIC4.12□□□□□ -1.75
VPS53Q5VIR6 AC005476.1-201ENST00000554427 397 ntBASIC4.12□□□□□ -1.75
VPS53Q5VIR6 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC4.12□□□□□ -1.75
VPS53Q5VIR6 HMGB1P6-201ENST00000569046 646 ntBASIC4.12□□□□□ -1.75
VPS53Q5VIR6 AC105224.1-201ENST00000587055 421 ntBASIC4.12□□□□□ -1.75
VPS53Q5VIR6 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC4.12□□□□□ -1.75
VPS53Q5VIR6 AC006254.3-201ENST00000603353 884 ntBASIC4.12□□□□□ -1.75
VPS53Q5VIR6 BNIP3P9-201ENST00000603714 553 ntBASIC4.12□□□□□ -1.75
VPS53Q5VIR6 AC025449.1-201ENST00000603896 529 ntBASIC4.12□□□□□ -1.75
VPS53Q5VIR6 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC4.12□□□□□ -1.75
VPS53Q5VIR6 AC004908.2-201ENST00000609090 574 ntBASIC4.12□□□□□ -1.75
VPS53Q5VIR6 AC245517.5-201ENST00000611529 162 ntBASIC4.12□□□□□ -1.75
VPS53Q5VIR6 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC4.12□□□□□ -1.75
VPS53Q5VIR6 AL353748.2-201ENST00000622148 471 ntBASIC4.12□□□□□ -1.75
VPS53Q5VIR6 AC112204.3-201ENST00000623822 332 ntBASIC4.12□□□□□ -1.75
VPS53Q5VIR6 ABCA9-AS1-203ENST00000627596 426 ntTSL 5 BASIC4.12□□□□□ -1.75
VPS53Q5VIR6 AP001486.2-201ENST00000561652 5113 ntBASIC4.12□□□□□ -1.75
VPS53Q5VIR6 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
VPS53Q5VIR6 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
VPS53Q5VIR6 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC4.12□□□□□ -1.75
VPS53Q5VIR6 AL513302.2-201ENST00000562313 1842 ntBASIC4.11□□□□□ -1.75
VPS53Q5VIR6 AL356274.2-201ENST00000624379 3752 ntBASIC4.11□□□□□ -1.75
VPS53Q5VIR6 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC4.11□□□□□ -1.75
VPS53Q5VIR6 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC4.11□□□□□ -1.75
VPS53Q5VIR6 CKAP2P1-201ENST00000555477 2049 ntBASIC4.11□□□□□ -1.75
VPS53Q5VIR6 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC4.11□□□□□ -1.75
VPS53Q5VIR6 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC4.11□□□□□ -1.75
VPS53Q5VIR6 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
VPS53Q5VIR6 CBX3P1-201ENST00000325243 554 ntBASIC4.11□□□□□ -1.75
VPS53Q5VIR6 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
VPS53Q5VIR6 CRP-203ENST00000368111 512 ntTSL 3 BASIC4.11□□□□□ -1.75
VPS53Q5VIR6 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC4.11□□□□□ -1.75
VPS53Q5VIR6 AP002088.1-201ENST00000382740 395 ntBASIC4.11□□□□□ -1.75
VPS53Q5VIR6 RNA5SP118-201ENST00000410385 109 ntBASIC4.11□□□□□ -1.75
VPS53Q5VIR6 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC4.11□□□□□ -1.75
VPS53Q5VIR6 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC4.11□□□□□ -1.75
VPS53Q5VIR6 AL358232.1-201ENST00000448030 501 ntBASIC4.11□□□□□ -1.75
VPS53Q5VIR6 AC010401.1-201ENST00000463867 348 ntBASIC4.11□□□□□ -1.75
VPS53Q5VIR6 RPL7L1P8-201ENST00000469911 741 ntBASIC4.11□□□□□ -1.75
VPS53Q5VIR6 AP000852.1-201ENST00000472460 573 ntBASIC4.11□□□□□ -1.75
VPS53Q5VIR6 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC4.11□□□□□ -1.75
VPS53Q5VIR6 AC017037.2-201ENST00000513850 890 ntBASIC4.11□□□□□ -1.75
VPS53Q5VIR6 AC046134.1-201ENST00000514454 666 ntBASIC4.11□□□□□ -1.75
VPS53Q5VIR6 SNORA31.8-201ENST00000516327 108 ntBASIC4.11□□□□□ -1.75
VPS53Q5VIR6 MIR2276-201ENST00000516886 89 ntBASIC4.11□□□□□ -1.75
VPS53Q5VIR6 RNU6-835P-201ENST00000516974 104 ntBASIC4.11□□□□□ -1.75
VPS53Q5VIR6 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC4.11□□□□□ -1.75
VPS53Q5VIR6 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC4.11□□□□□ -1.75
VPS53Q5VIR6 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC4.11□□□□□ -1.75
VPS53Q5VIR6 MIR4719-201ENST00000585233 84 ntBASIC4.11□□□□□ -1.75
VPS53Q5VIR6 AC007038.2-201ENST00000608095 740 ntBASIC4.11□□□□□ -1.75
VPS53Q5VIR6 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC4.11□□□□□ -1.75
VPS53Q5VIR6 SRP54-214ENST00000630962 162 ntTSL 5 BASIC4.11□□□□□ -1.75
VPS53Q5VIR6 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
VPS53Q5VIR6 AC032011.1-201ENST00000611703 1549 ntBASIC4.11□□□□□ -1.75
VPS53Q5VIR6 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC4.1□□□□□ -1.75
VPS53Q5VIR6 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC4.1□□□□□ -1.75
VPS53Q5VIR6 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC4.1□□□□□ -1.75
VPS53Q5VIR6 OR1S2-201ENST00000302592 978 ntBASIC4.1□□□□□ -1.75
VPS53Q5VIR6 RNY3P13-201ENST00000365542 102 ntBASIC4.1□□□□□ -1.75
VPS53Q5VIR6 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
VPS53Q5VIR6 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
VPS53Q5VIR6 RNU4-65P-201ENST00000410473 140 ntBASIC4.1□□□□□ -1.75
VPS53Q5VIR6 RPL21P111-201ENST00000418453 477 ntBASIC4.1□□□□□ -1.75
VPS53Q5VIR6 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC4.1□□□□□ -1.75
VPS53Q5VIR6 BX842559.1-201ENST00000419615 532 ntBASIC4.1□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 124.9 ms