Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC008162.1-201ENST00000604718 254 ntBASIC3.39□□□□□ -1.87
COL28A1Q2UY09 AL670379.1-201ENST00000604752 252 ntBASIC3.39□□□□□ -1.87
COL28A1Q2UY09 AL033523.1-201ENST00000605153 153 ntBASIC3.39□□□□□ -1.87
COL28A1Q2UY09 AL670379.5-201ENST00000605253 252 ntBASIC3.39□□□□□ -1.87
COL28A1Q2UY09 AL670379.12-201ENST00000605291 253 ntBASIC3.39□□□□□ -1.87
COL28A1Q2UY09 AL670379.8-201ENST00000605353 252 ntBASIC3.39□□□□□ -1.87
COL28A1Q2UY09 AL670379.7-201ENST00000605823 252 ntBASIC3.39□□□□□ -1.87
COL28A1Q2UY09 TMEM154-204ENST00000613578 486 ntAPPRIS ALT2 TSL 5 BASIC3.39□□□□□ -1.87
COL28A1Q2UY09 AC090132.2-201ENST00000615881 347 ntBASIC3.39□□□□□ -1.87
COL28A1Q2UY09 AC098679.4-201ENST00000624241 654 ntBASIC3.39□□□□□ -1.87
COL28A1Q2UY09 AC005183.1-201ENST00000603687 1979 ntBASIC3.39□□□□□ -1.87
COL28A1Q2UY09 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC3.39□□□□□ -1.87
COL28A1Q2UY09 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
COL28A1Q2UY09 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC3.39□□□□□ -1.87
COL28A1Q2UY09 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.38□□□□□ -1.87
COL28A1Q2UY09 AF127577.6-201ENST00000623352 2191 ntBASIC3.38□□□□□ -1.87
COL28A1Q2UY09 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
COL28A1Q2UY09 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
COL28A1Q2UY09 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC3.38□□□□□ -1.87
COL28A1Q2UY09 RNU6-960P-201ENST00000364056 120 ntBASIC3.38□□□□□ -1.87
COL28A1Q2UY09 SNORD6-201ENST00000365444 73 ntBASIC3.38□□□□□ -1.87
COL28A1Q2UY09 RNU6-1103P-201ENST00000384150 107 ntBASIC3.38□□□□□ -1.87
COL28A1Q2UY09 Y_RNA.517-201ENST00000384551 106 ntBASIC3.38□□□□□ -1.87
COL28A1Q2UY09 RN7SKP140-201ENST00000411196 284 ntBASIC3.38□□□□□ -1.87
COL28A1Q2UY09 AL513331.1-201ENST00000411908 397 ntBASIC3.38□□□□□ -1.87
COL28A1Q2UY09 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
COL28A1Q2UY09 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC3.38□□□□□ -1.87
COL28A1Q2UY09 OR2AS1P-201ENST00000427827 319 ntBASIC3.38□□□□□ -1.87
COL28A1Q2UY09 HMGB3P12-201ENST00000438745 556 ntBASIC3.38□□□□□ -1.87
COL28A1Q2UY09 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC3.38□□□□□ -1.87
COL28A1Q2UY09 AL034349.1-201ENST00000458367 549 ntTSL 5 BASIC3.38□□□□□ -1.87
COL28A1Q2UY09 RN7SL432P-201ENST00000484057 298 ntBASIC3.38□□□□□ -1.87
COL28A1Q2UY09 RPL37P25-201ENST00000507308 276 ntBASIC3.38□□□□□ -1.87
COL28A1Q2UY09 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC3.38□□□□□ -1.87
COL28A1Q2UY09 LINC02100-201ENST00000512978 238 ntTSL 3 BASIC3.38□□□□□ -1.87
COL28A1Q2UY09 RNU7-51P-201ENST00000516560 62 ntBASIC3.38□□□□□ -1.87
COL28A1Q2UY09 RN7SKP258-201ENST00000517151 304 ntBASIC3.38□□□□□ -1.87
COL28A1Q2UY09 AC090572.1-201ENST00000519251 160 ntBASIC3.38□□□□□ -1.87
COL28A1Q2UY09 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
COL28A1Q2UY09 MGST1-215ENST00000540056 546 ntTSL 3 BASIC3.38□□□□□ -1.87
COL28A1Q2UY09 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC3.38□□□□□ -1.87
COL28A1Q2UY09 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC3.38□□□□□ -1.87
COL28A1Q2UY09 MIR4738-201ENST00000579134 87 ntBASIC3.38□□□□□ -1.87
COL28A1Q2UY09 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC3.38□□□□□ -1.87
COL28A1Q2UY09 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC3.38□□□□□ -1.87
COL28A1Q2UY09 MIR98-201ENST00000606724 119 ntBASIC3.38□□□□□ -1.87
COL28A1Q2UY09 AP002360.4-201ENST00000606980 481 ntBASIC3.38□□□□□ -1.87
COL28A1Q2UY09 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
COL28A1Q2UY09 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
COL28A1Q2UY09 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
COL28A1Q2UY09 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
COL28A1Q2UY09 MTND5P26-201ENST00000426018 1752 ntBASIC3.38□□□□□ -1.87
COL28A1Q2UY09 OR4G2P-202ENST00000641004 1759 ntBASIC3.38□□□□□ -1.87
COL28A1Q2UY09 MTND5P29-201ENST00000458676 1807 ntBASIC3.37□□□□□ -1.87
COL28A1Q2UY09 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
COL28A1Q2UY09 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
COL28A1Q2UY09 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC3.37□□□□□ -1.87
COL28A1Q2UY09 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC3.37□□□□□ -1.87
COL28A1Q2UY09 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
COL28A1Q2UY09 RNU6-108P-201ENST00000365558 107 ntBASIC3.37□□□□□ -1.87
COL28A1Q2UY09 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC3.37□□□□□ -1.87
COL28A1Q2UY09 RNU2-36P-201ENST00000410361 191 ntBASIC3.37□□□□□ -1.87
COL28A1Q2UY09 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC3.37□□□□□ -1.87
COL28A1Q2UY09 HMGB3P20-201ENST00000417997 600 ntBASIC3.37□□□□□ -1.87
COL28A1Q2UY09 AC245054.1-201ENST00000420944 258 ntBASIC3.37□□□□□ -1.87
COL28A1Q2UY09 ABCC5-AS1-201ENST00000422946 469 ntTSL 2 BASIC3.37□□□□□ -1.87
COL28A1Q2UY09 RAC1P6-201ENST00000423911 575 ntBASIC3.37□□□□□ -1.87
COL28A1Q2UY09 AL590383.1-201ENST00000428602 75 ntBASIC3.37□□□□□ -1.87
COL28A1Q2UY09 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC3.37□□□□□ -1.87
COL28A1Q2UY09 RPL36AP6-201ENST00000435770 321 ntBASIC3.37□□□□□ -1.87
COL28A1Q2UY09 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC3.37□□□□□ -1.87
COL28A1Q2UY09 C1DP4-201ENST00000455429 424 ntBASIC3.37□□□□□ -1.87
COL28A1Q2UY09 RPS20P22-201ENST00000473700 357 ntBASIC3.37□□□□□ -1.87
COL28A1Q2UY09 AL049874.1-201ENST00000489560 388 ntBASIC3.37□□□□□ -1.87
COL28A1Q2UY09 HMGB1P29-201ENST00000505659 499 ntBASIC3.37□□□□□ -1.87
COL28A1Q2UY09 AC108078.1-201ENST00000508073 725 ntBASIC3.37□□□□□ -1.87
COL28A1Q2UY09 PCBP2P3-201ENST00000509726 843 ntBASIC3.37□□□□□ -1.87
COL28A1Q2UY09 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC3.37□□□□□ -1.87
COL28A1Q2UY09 SNORA31.3-201ENST00000516029 96 ntBASIC3.37□□□□□ -1.87
COL28A1Q2UY09 RNU6-390P-201ENST00000516259 103 ntBASIC3.37□□□□□ -1.87
COL28A1Q2UY09 RNU4ATAC15P-201ENST00000516415 126 ntBASIC3.37□□□□□ -1.87
COL28A1Q2UY09 RNU6-1092P-201ENST00000516955 87 ntBASIC3.37□□□□□ -1.87
COL28A1Q2UY09 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC3.37□□□□□ -1.87
COL28A1Q2UY09 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC3.37□□□□□ -1.87
COL28A1Q2UY09 AC004024.1-201ENST00000549244 247 ntBASIC3.37□□□□□ -1.87
COL28A1Q2UY09 AC124947.2-202ENST00000552735 133 ntBASIC3.37□□□□□ -1.87
COL28A1Q2UY09 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC3.37□□□□□ -1.87
COL28A1Q2UY09 MIR4276-201ENST00000584832 70 ntBASIC3.37□□□□□ -1.87
COL28A1Q2UY09 GLUD1P4-201ENST00000590914 418 ntBASIC3.37□□□□□ -1.87
COL28A1Q2UY09 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC3.37□□□□□ -1.87
COL28A1Q2UY09 AL137790.1-201ENST00000634283 177 ntBASIC3.37□□□□□ -1.87
COL28A1Q2UY09 AP000553.6-201ENST00000641242 118 ntBASIC3.37□□□□□ -1.87
COL28A1Q2UY09 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC3.37□□□□□ -1.87
COL28A1Q2UY09 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.37□□□□□ -1.87
COL28A1Q2UY09 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC3.37□□□□□ -1.87
COL28A1Q2UY09 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
COL28A1Q2UY09 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.36□□□□□ -1.87
COL28A1Q2UY09 ANKRD26P2-201ENST00000445530 1710 ntBASIC3.36□□□□□ -1.87
COL28A1Q2UY09 CD36-221ENST00000534394 1741 ntTSL 2 BASIC3.36□□□□□ -1.87
COL28A1Q2UY09 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC3.36□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 103.3 ms