Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 BDP1P-201ENST00000582658 1990 ntBASIC3.91□□□□□ -1.78
COL4A3Q01955 FUT9-201ENST00000302103 12783 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
COL4A3Q01955 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC3.9□□□□□ -1.78
COL4A3Q01955 RNVU1-3-201ENST00000364313 161 ntBASIC3.9□□□□□ -1.78
COL4A3Q01955 SNORD116-11-201ENST00000383882 92 ntBASIC3.9□□□□□ -1.78
COL4A3Q01955 Y_RNA.452-201ENST00000384202 108 ntBASIC3.9□□□□□ -1.78
COL4A3Q01955 SNORA48.2-201ENST00000390926 124 ntBASIC3.9□□□□□ -1.78
COL4A3Q01955 AL162394.1-201ENST00000413271 419 ntTSL 2 BASIC3.9□□□□□ -1.78
COL4A3Q01955 AC011742.1-201ENST00000431448 434 ntBASIC3.9□□□□□ -1.78
COL4A3Q01955 AC005019.1-201ENST00000436455 431 ntBASIC3.9□□□□□ -1.78
COL4A3Q01955 HMGB1P37-201ENST00000439613 609 ntBASIC3.9□□□□□ -1.78
COL4A3Q01955 MTCO3P10-201ENST00000455912 772 ntBASIC3.9□□□□□ -1.78
COL4A3Q01955 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC3.9□□□□□ -1.78
COL4A3Q01955 AC004801.2-202ENST00000463559 283 ntBASIC3.9□□□□□ -1.78
COL4A3Q01955 AC068633.1-201ENST00000482142 787 ntTSL 5 BASIC3.9□□□□□ -1.78
COL4A3Q01955 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC3.9□□□□□ -1.78
COL4A3Q01955 RN7SKP295-201ENST00000517264 153 ntBASIC3.9□□□□□ -1.78
COL4A3Q01955 HMGB1P19-201ENST00000517578 577 ntBASIC3.9□□□□□ -1.78
COL4A3Q01955 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC3.9□□□□□ -1.78
COL4A3Q01955 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC3.9□□□□□ -1.78
COL4A3Q01955 AL133271.1-201ENST00000538229 291 ntBASIC3.9□□□□□ -1.78
COL4A3Q01955 AL133153.1-201ENST00000557756 303 ntBASIC3.9□□□□□ -1.78
COL4A3Q01955 AC008269.2-201ENST00000561915 1105 ntBASIC3.9□□□□□ -1.78
COL4A3Q01955 AC024619.4-201ENST00000580924 316 ntBASIC3.9□□□□□ -1.78
COL4A3Q01955 BNIP3P25-201ENST00000596023 559 ntBASIC3.9□□□□□ -1.78
COL4A3Q01955 AL670379.11-201ENST00000604059 253 ntBASIC3.9□□□□□ -1.78
COL4A3Q01955 AL670379.10-201ENST00000604330 253 ntBASIC3.9□□□□□ -1.78
COL4A3Q01955 AL670379.12-201ENST00000605291 253 ntBASIC3.9□□□□□ -1.78
COL4A3Q01955 AL670379.9-201ENST00000605428 253 ntBASIC3.9□□□□□ -1.78
COL4A3Q01955 AC012409.4-201ENST00000612923 249 ntBASIC3.9□□□□□ -1.78
COL4A3Q01955 KCNC4-201ENST00000369787 18750 ntAPPRIS P3 TSL 1 (best) BASIC3.9□□□□□ -1.78
COL4A3Q01955 SLFN5-201ENST00000299977 10591 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
COL4A3Q01955 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC3.9□□□□□ -1.78
COL4A3Q01955 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC3.9□□□□□ -1.78
COL4A3Q01955 ROBO2-213ENST00000614793 7662 ntTSL 5 BASIC3.9□□□□□ -1.78
COL4A3Q01955 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC3.9□□□□□ -1.78
COL4A3Q01955 ZNF345-213ENST00000589046 3120 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
COL4A3Q01955 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC3.9□□□□□ -1.79
COL4A3Q01955 SPATA1-206ENST00000490879 2888 ntAPPRIS P1 TSL 5 BASIC3.9□□□□□ -1.79
COL4A3Q01955 RSF1-204ENST00000480887 5318 ntAPPRIS ALT2 TSL 1 (best) BASIC3.9□□□□□ -1.79
COL4A3Q01955 HYDIN-201ENST00000288168 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC3.9□□□□□ -1.79
COL4A3Q01955 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC3.9□□□□□ -1.79
COL4A3Q01955 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
COL4A3Q01955 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
COL4A3Q01955 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
COL4A3Q01955 RNU6-960P-201ENST00000364056 120 ntBASIC3.9□□□□□ -1.79
COL4A3Q01955 RNU6-1318P-201ENST00000365389 103 ntBASIC3.9□□□□□ -1.79
COL4A3Q01955 RNU6-61P-201ENST00000365528 109 ntBASIC3.9□□□□□ -1.79
COL4A3Q01955 RHOT1P2-201ENST00000366423 333 ntBASIC3.9□□□□□ -1.79
COL4A3Q01955 Y_RNA.576-201ENST00000384781 102 ntBASIC3.9□□□□□ -1.79
COL4A3Q01955 EIF4E2P1-201ENST00000393781 255 ntBASIC3.9□□□□□ -1.79
COL4A3Q01955 SNORA3.3-201ENST00000408712 125 ntBASIC3.9□□□□□ -1.79
COL4A3Q01955 POLHP1-201ENST00000411806 470 ntBASIC3.9□□□□□ -1.79
COL4A3Q01955 AC017083.1-201ENST00000428093 483 ntBASIC3.9□□□□□ -1.79
COL4A3Q01955 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC3.9□□□□□ -1.79
COL4A3Q01955 SNRPEP4-201ENST00000435815 279 ntBASIC3.9□□□□□ -1.79
COL4A3Q01955 RPL35AP22-201ENST00000436855 335 ntBASIC3.9□□□□□ -1.79
COL4A3Q01955 RPL21P23-201ENST00000446654 460 ntBASIC3.9□□□□□ -1.79
COL4A3Q01955 AC016696.1-201ENST00000446949 318 ntBASIC3.9□□□□□ -1.79
COL4A3Q01955 SNORD97-201ENST00000459187 142 ntBASIC3.9□□□□□ -1.79
COL4A3Q01955 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC3.9□□□□□ -1.79
COL4A3Q01955 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC3.9□□□□□ -1.79
COL4A3Q01955 RFPL4AP5-201ENST00000514977 504 ntBASIC3.9□□□□□ -1.79
COL4A3Q01955 RN7SKP57-201ENST00000517248 293 ntBASIC3.9□□□□□ -1.79
COL4A3Q01955 AC009902.1-201ENST00000519351 183 ntBASIC3.9□□□□□ -1.79
COL4A3Q01955 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC3.9□□□□□ -1.79
COL4A3Q01955 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC3.9□□□□□ -1.79
COL4A3Q01955 AL355598.1-201ENST00000604169 202 ntBASIC3.9□□□□□ -1.79
COL4A3Q01955 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC3.9□□□□□ -1.79
COL4A3Q01955 AC243312.2-201ENST00000623340 601 ntBASIC3.9□□□□□ -1.79
COL4A3Q01955 STEAP2-203ENST00000394622 6612 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
COL4A3Q01955 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
COL4A3Q01955 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
COL4A3Q01955 RNF213-204ENST00000508628 17730 ntAPPRIS ALT2 TSL 5 BASIC3.89□□□□□ -1.79
COL4A3Q01955 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
COL4A3Q01955 CSMD3-204ENST00000455883 12485 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
COL4A3Q01955 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
COL4A3Q01955 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC3.89□□□□□ -1.79
COL4A3Q01955 TMEM154-201ENST00000304385 10698 ntAPPRIS P2 TSL 1 (best) BASIC3.89□□□□□ -1.79
COL4A3Q01955 SOS1-203ENST00000426016 8517 ntAPPRIS P2 TSL 2 BASIC3.89□□□□□ -1.79
COL4A3Q01955 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
COL4A3Q01955 AC011978.2-201ENST00000569835 2054 ntBASIC3.89□□□□□ -1.79
COL4A3Q01955 TNRC6B-201ENST00000301923 15958 ntAPPRIS P3 TSL 5 BASIC3.89□□□□□ -1.79
COL4A3Q01955 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC3.89□□□□□ -1.79
COL4A3Q01955 OTOGL-204ENST00000547103 8032 ntAPPRIS ALT2 TSL 5 BASIC3.89□□□□□ -1.79
COL4A3Q01955 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC3.89□□□□□ -1.79
COL4A3Q01955 PLD1-203ENST00000356327 5855 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
COL4A3Q01955 Y_RNA.158-201ENST00000363651 101 ntBASIC3.89□□□□□ -1.79
COL4A3Q01955 SNORA24.1-201ENST00000384401 135 ntBASIC3.89□□□□□ -1.79
COL4A3Q01955 OFD1P1Y-201ENST00000411756 1225 ntBASIC3.89□□□□□ -1.79
COL4A3Q01955 BX323014.1-201ENST00000412876 237 ntBASIC3.89□□□□□ -1.79
COL4A3Q01955 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC3.89□□□□□ -1.79
COL4A3Q01955 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC3.89□□□□□ -1.79
COL4A3Q01955 RPL7P46-201ENST00000425129 740 ntBASIC3.89□□□□□ -1.79
COL4A3Q01955 MTCYBP9-201ENST00000431021 303 ntBASIC3.89□□□□□ -1.79
COL4A3Q01955 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC3.89□□□□□ -1.79
COL4A3Q01955 RPL21P8-201ENST00000465083 535 ntBASIC3.89□□□□□ -1.79
COL4A3Q01955 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC3.89□□□□□ -1.79
COL4A3Q01955 RN7SL809P-201ENST00000482040 297 ntBASIC3.89□□□□□ -1.79
COL4A3Q01955 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC3.89□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 84.3 ms