Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 TUG1_2.1-201ENST00000614234 87 ntBASIC2.82□□□□□ -1.96
PTPN4P29074 AC008147.4-201ENST00000617570 1204 ntBASIC2.82□□□□□ -1.96
PTPN4P29074 AP003485.2-201ENST00000623636 610 ntBASIC2.82□□□□□ -1.96
PTPN4P29074 AC079416.3-201ENST00000624479 549 ntBASIC2.82□□□□□ -1.96
PTPN4P29074 AC091965.5-201ENST00000624785 342 ntBASIC2.82□□□□□ -1.96
PTPN4P29074 AC007671.2-201ENST00000637344 619 ntBASIC2.82□□□□□ -1.96
PTPN4P29074 AC099063.3-201ENST00000642066 185 ntBASIC2.82□□□□□ -1.96
PTPN4P29074 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
PTPN4P29074 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.82□□□□□ -1.96
PTPN4P29074 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
PTPN4P29074 SNORA25.6-201ENST00000364121 118 ntBASIC2.81□□□□□ -1.96
PTPN4P29074 MIR325-201ENST00000385260 98 ntBASIC2.81□□□□□ -1.96
PTPN4P29074 AL513331.1-201ENST00000411908 397 ntBASIC2.81□□□□□ -1.96
PTPN4P29074 RPL23AP39-201ENST00000415533 405 ntBASIC2.81□□□□□ -1.96
PTPN4P29074 VPS26BP1-201ENST00000417155 755 ntBASIC2.81□□□□□ -1.96
PTPN4P29074 AL158834.1-201ENST00000419441 466 ntTSL 5 BASIC2.81□□□□□ -1.96
PTPN4P29074 USP12PX-201ENST00000432383 1057 ntBASIC2.81□□□□□ -1.96
PTPN4P29074 UBE2D3P1-201ENST00000436669 444 ntBASIC2.81□□□□□ -1.96
PTPN4P29074 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC2.81□□□□□ -1.96
PTPN4P29074 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC2.81□□□□□ -1.96
PTPN4P29074 MRPL50P4-201ENST00000446432 475 ntBASIC2.81□□□□□ -1.96
PTPN4P29074 ST13P20-201ENST00000447996 1065 ntBASIC2.81□□□□□ -1.96
PTPN4P29074 RNU7-59P-201ENST00000459101 61 ntBASIC2.81□□□□□ -1.96
PTPN4P29074 MTCO2P6-201ENST00000463134 685 ntBASIC2.81□□□□□ -1.96
PTPN4P29074 RPS3AP22-201ENST00000488297 769 ntBASIC2.81□□□□□ -1.96
PTPN4P29074 RPS27P26-201ENST00000494583 239 ntBASIC2.81□□□□□ -1.96
PTPN4P29074 AC135721.1-201ENST00000497954 479 ntBASIC2.81□□□□□ -1.96
PTPN4P29074 AC008883.2-201ENST00000505796 414 ntTSL 3 BASIC2.81□□□□□ -1.96
PTPN4P29074 SEM1P1-201ENST00000506694 209 ntBASIC2.81□□□□□ -1.96
PTPN4P29074 TBCAP3-201ENST00000512475 312 ntBASIC2.81□□□□□ -1.96
PTPN4P29074 MRPS33P3-201ENST00000513456 322 ntBASIC2.81□□□□□ -1.96
PTPN4P29074 AC091826.1-201ENST00000514065 313 ntBASIC2.81□□□□□ -1.96
PTPN4P29074 IGHVII-62-1-201ENST00000519283 235 ntBASIC2.81□□□□□ -1.96
PTPN4P29074 AP002748.2-201ENST00000528671 348 ntBASIC2.81□□□□□ -1.96
PTPN4P29074 CCDC7-208ENST00000537047 657 ntAPPRIS ALT2 TSL 1 (best) BASIC2.81□□□□□ -1.96
PTPN4P29074 AL157955.1-201ENST00000554433 331 ntTSL 3 BASIC2.81□□□□□ -1.96
PTPN4P29074 AC008015.1-201ENST00000555505 465 ntBASIC2.81□□□□□ -1.96
PTPN4P29074 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC2.81□□□□□ -1.96
PTPN4P29074 AC145350.1-201ENST00000567426 208 ntBASIC2.81□□□□□ -1.96
PTPN4P29074 BNIP3P23-201ENST00000599655 511 ntBASIC2.81□□□□□ -1.96
PTPN4P29074 AL356575.1-201ENST00000603008 283 ntBASIC2.81□□□□□ -1.96
PTPN4P29074 AC097468.3-201ENST00000607956 456 ntBASIC2.81□□□□□ -1.96
PTPN4P29074 SDR42E1P2-201ENST00000614861 481 ntBASIC2.81□□□□□ -1.96
PTPN4P29074 AC091304.6-201ENST00000619761 202 ntBASIC2.81□□□□□ -1.96
PTPN4P29074 AL391597.2-201ENST00000635698 479 ntTSL 5 BASIC2.81□□□□□ -1.96
PTPN4P29074 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
PTPN4P29074 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC2.81□□□□□ -1.96
PTPN4P29074 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC2.8□□□□□ -1.96
PTPN4P29074 RNU5A-2P-201ENST00000384337 116 ntBASIC2.8□□□□□ -1.96
PTPN4P29074 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
PTPN4P29074 RNU2-25P-201ENST00000411041 191 ntBASIC2.8□□□□□ -1.96
PTPN4P29074 RNA5SP492-201ENST00000411330 114 ntBASIC2.8□□□□□ -1.96
PTPN4P29074 HMGB1P11-201ENST00000413899 637 ntBASIC2.8□□□□□ -1.96
PTPN4P29074 TEX41-202ENST00000414256 604 ntTSL 5 BASIC2.8□□□□□ -1.96
PTPN4P29074 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC2.8□□□□□ -1.96
PTPN4P29074 AL358075.3-201ENST00000426289 226 ntBASIC2.8□□□□□ -1.96
PTPN4P29074 AL445669.1-201ENST00000426743 755 ntBASIC2.8□□□□□ -1.96
PTPN4P29074 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC2.8□□□□□ -1.96
PTPN4P29074 AL596220.1-202ENST00000429768 314 ntTSL 3 BASIC2.8□□□□□ -1.96
PTPN4P29074 Z82210.1-201ENST00000440037 231 ntBASIC2.8□□□□□ -1.96
PTPN4P29074 AC093156.1-201ENST00000440382 670 ntBASIC2.8□□□□□ -1.96
PTPN4P29074 AL592182.1-201ENST00000440897 250 ntTSL 5 BASIC2.8□□□□□ -1.96
PTPN4P29074 MTCO3P45-201ENST00000443036 613 ntBASIC2.8□□□□□ -1.96
PTPN4P29074 AL135938.1-201ENST00000443141 297 ntBASIC2.8□□□□□ -1.96
PTPN4P29074 FAM103A2P-201ENST00000444122 354 ntBASIC2.8□□□□□ -1.96
PTPN4P29074 AL731568.1-201ENST00000445111 434 ntTSL 2 BASIC2.8□□□□□ -1.96
PTPN4P29074 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC2.8□□□□□ -1.96
PTPN4P29074 AC098826.2-201ENST00000452011 651 ntBASIC2.8□□□□□ -1.96
PTPN4P29074 AC068587.2-201ENST00000478386 781 ntBASIC2.8□□□□□ -1.96
PTPN4P29074 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC2.8□□□□□ -1.96
PTPN4P29074 RNA5SP356-201ENST00000515972 94 ntBASIC2.8□□□□□ -1.96
PTPN4P29074 RNU6-678P-201ENST00000516832 109 ntBASIC2.8□□□□□ -1.96
PTPN4P29074 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC2.8□□□□□ -1.96
PTPN4P29074 KLRF2-201ENST00000535540 731 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
PTPN4P29074 PPFIA2-AS1-205ENST00000550938 790 ntTSL 3 BASIC2.8□□□□□ -1.96
PTPN4P29074 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC2.8□□□□□ -1.96
PTPN4P29074 TRAV28-201ENST00000557548 323 ntBASIC2.8□□□□□ -1.96
PTPN4P29074 AC026474.1-201ENST00000562422 428 ntTSL 2 BASIC2.8□□□□□ -1.96
PTPN4P29074 MIR3605-201ENST00000583214 100 ntBASIC2.8□□□□□ -1.96
PTPN4P29074 AC068790.3-201ENST00000602988 553 ntBASIC2.8□□□□□ -1.96
PTPN4P29074 FBXW7-AS1-201ENST00000605147 372 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
PTPN4P29074 AC005046.1-201ENST00000608515 625 ntBASIC2.8□□□□□ -1.96
PTPN4P29074 AC010133.1-201ENST00000615809 842 ntBASIC2.8□□□□□ -1.96
PTPN4P29074 UCA1.1-201ENST00000620952 75 ntBASIC2.8□□□□□ -1.96
PTPN4P29074 AC097520.1-201ENST00000624435 385 ntBASIC2.8□□□□□ -1.96
PTPN4P29074 AP003399.1-201ENST00000637534 361 ntBASIC2.8□□□□□ -1.96
PTPN4P29074 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
PTPN4P29074 MTND4P16-201ENST00000466108 1367 ntBASIC2.79□□□□□ -1.96
PTPN4P29074 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
PTPN4P29074 RNU6-660P-201ENST00000364566 109 ntBASIC2.79□□□□□ -1.96
PTPN4P29074 MIR627-201ENST00000384979 97 ntBASIC2.79□□□□□ -1.96
PTPN4P29074 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
PTPN4P29074 LINC01065-201ENST00000417989 577 ntTSL 3 BASIC2.79□□□□□ -1.96
PTPN4P29074 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC2.79□□□□□ -1.96
PTPN4P29074 AL365496.1-201ENST00000426885 215 ntBASIC2.79□□□□□ -1.96
PTPN4P29074 BMI1P1-201ENST00000445879 941 ntBASIC2.79□□□□□ -1.96
PTPN4P29074 AL135787.1-201ENST00000450154 302 ntTSL 3 BASIC2.79□□□□□ -1.96
PTPN4P29074 ART2BP-201ENST00000453501 499 ntBASIC2.79□□□□□ -1.96
PTPN4P29074 AC072039.1-201ENST00000477611 581 ntBASIC2.79□□□□□ -1.96
PTPN4P29074 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 79.1 ms