Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 SNORA40.9-201ENST00000515895 93 ntBASIC4.7□□□□□ -1.66
COL8A1P27658 DEFB131C-201ENST00000528817 165 ntBASIC4.7□□□□□ -1.66
COL8A1P27658 AC126615.2-201ENST00000553003 515 ntBASIC4.7□□□□□ -1.66
COL8A1P27658 AC091544.7-201ENST00000554000 240 ntTSL 3 BASIC4.7□□□□□ -1.66
COL8A1P27658 MIR4311-201ENST00000580794 100 ntBASIC4.7□□□□□ -1.66
COL8A1P27658 AC090616.3-201ENST00000582184 217 ntBASIC4.7□□□□□ -1.66
COL8A1P27658 SMIM24-204ENST00000591708 660 ntAPPRIS ALT2 TSL 2 BASIC4.7□□□□□ -1.66
COL8A1P27658 AC008814.1-201ENST00000603797 406 ntBASIC4.7□□□□□ -1.66
COL8A1P27658 AL590392.1-201ENST00000604960 446 ntBASIC4.7□□□□□ -1.66
COL8A1P27658 RNU6-6P-201ENST00000606623 107 ntBASIC4.7□□□□□ -1.66
COL8A1P27658 SLC28A3-201ENST00000376238 4887 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
COL8A1P27658 LRRN3-204ENST00000451085 3725 ntAPPRIS P1 TSL 2 BASIC4.7□□□□□ -1.66
COL8A1P27658 AGO2-201ENST00000220592 14581 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
COL8A1P27658 ESRRG-205ENST00000366937 5365 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
COL8A1P27658 CCR2-202ENST00000400888 2232 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
COL8A1P27658 SLC12A1-205ENST00000558405 3426 ntAPPRIS P3 TSL 1 (best) BASIC4.7□□□□□ -1.66
COL8A1P27658 POSTN-204ENST00000379749 3210 ntTSL 5 BASIC4.7□□□□□ -1.66
COL8A1P27658 LMO3-201ENST00000261169 3810 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
COL8A1P27658 MID2-202ENST00000443968 2251 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
COL8A1P27658 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC4.7□□□□□ -1.66
COL8A1P27658 AC006145.1-201ENST00000439234 2651 ntTSL 2 BASIC4.69□□□□□ -1.66
COL8A1P27658 OR10A3-202ENST00000642047 2650 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
COL8A1P27658 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
COL8A1P27658 AL080276.2-201ENST00000637995 2090 ntTSL 3 BASIC4.69□□□□□ -1.66
COL8A1P27658 AC138409.2-201ENST00000514048 5001 ntTSL 5 BASIC4.69□□□□□ -1.66
COL8A1P27658 KRR1-201ENST00000229214 10118 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
COL8A1P27658 MFSD8-239ENST00000641590 2479 ntBASIC4.69□□□□□ -1.66
COL8A1P27658 MAP3K20-202ENST00000375213 3741 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
COL8A1P27658 MROH2B-203ENST00000506092 3745 ntTSL 2 BASIC4.69□□□□□ -1.66
COL8A1P27658 WDHD1-201ENST00000360586 5996 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
COL8A1P27658 AMY1B-201ENST00000330330 1862 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
COL8A1P27658 TOX-201ENST00000361421 4131 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
COL8A1P27658 IQCB2P-201ENST00000401788 1633 ntBASIC4.69□□□□□ -1.66
COL8A1P27658 AC024337.2-201ENST00000616608 2797 ntTSL 5 BASIC4.69□□□□□ -1.66
COL8A1P27658 LINC00550-201ENST00000629293 3434 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
COL8A1P27658 PLCB1-211ENST00000617005 6458 ntTSL 5 BASIC4.69□□□□□ -1.66
COL8A1P27658 RNU6-376P-201ENST00000384731 106 ntBASIC4.69□□□□□ -1.66
COL8A1P27658 MIR600-201ENST00000385007 98 ntBASIC4.69□□□□□ -1.66
COL8A1P27658 RNU6ATAC34P-201ENST00000408879 121 ntBASIC4.69□□□□□ -1.66
COL8A1P27658 SNORD12B-201ENST00000410433 91 ntBASIC4.69□□□□□ -1.66
COL8A1P27658 TBCAP2-201ENST00000416175 326 ntBASIC4.69□□□□□ -1.66
COL8A1P27658 AL117339.3-201ENST00000418733 162 ntBASIC4.69□□□□□ -1.66
COL8A1P27658 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC4.69□□□□□ -1.66
COL8A1P27658 AL133244.1-201ENST00000456007 258 ntBASIC4.69□□□□□ -1.66
COL8A1P27658 snoU13.30-201ENST00000458951 104 ntBASIC4.69□□□□□ -1.66
COL8A1P27658 snoU109.4-201ENST00000458953 143 ntBASIC4.69□□□□□ -1.66
COL8A1P27658 RNU6-1218P-201ENST00000458990 108 ntBASIC4.69□□□□□ -1.66
COL8A1P27658 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC4.69□□□□□ -1.66
COL8A1P27658 RPL26P26-201ENST00000480251 434 ntBASIC4.69□□□□□ -1.66
COL8A1P27658 RPS15AP34-201ENST00000487776 387 ntBASIC4.69□□□□□ -1.66
COL8A1P27658 MRPS33P2-201ENST00000507850 322 ntBASIC4.69□□□□□ -1.66
COL8A1P27658 RNU5E-3P-201ENST00000515913 68 ntBASIC4.69□□□□□ -1.66
COL8A1P27658 SNORA70.11-201ENST00000515987 138 ntBASIC4.69□□□□□ -1.66
COL8A1P27658 SNORA70.13-201ENST00000516116 138 ntBASIC4.69□□□□□ -1.66
COL8A1P27658 RNA5SP373-201ENST00000517271 95 ntBASIC4.69□□□□□ -1.66
COL8A1P27658 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC4.69□□□□□ -1.66
COL8A1P27658 IGLVIV-53-201ENST00000520107 367 ntBASIC4.69□□□□□ -1.66
COL8A1P27658 AP001085.1-201ENST00000524441 639 ntTSL 2 BASIC4.69□□□□□ -1.66
COL8A1P27658 AC011603.4-201ENST00000611325 277 ntBASIC4.69□□□□□ -1.66
COL8A1P27658 AC006001.4-201ENST00000622243 395 ntBASIC4.69□□□□□ -1.66
COL8A1P27658 snoU18.1-201ENST00000629629 71 ntBASIC4.69□□□□□ -1.66
COL8A1P27658 ZNF347-201ENST00000334197 7960 ntAPPRIS P3 TSL 1 (best) BASIC4.69□□□□□ -1.66
COL8A1P27658 ERBIN-208ENST00000506030 4386 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
COL8A1P27658 CLCN3-201ENST00000347613 3635 ntAPPRIS P4 TSL 1 (best) BASIC4.69□□□□□ -1.66
COL8A1P27658 NOL8-214ENST00000535387 3390 ntAPPRIS ALT2 TSL 5 BASIC4.69□□□□□ -1.66
COL8A1P27658 DNAH5-201ENST00000265104 15633 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
COL8A1P27658 TOPBP1-201ENST00000260810 5378 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
COL8A1P27658 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC4.69□□□□□ -1.66
COL8A1P27658 AQP9-201ENST00000219919 3034 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
COL8A1P27658 CASC1-201ENST00000320267 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC4.69□□□□□ -1.66
COL8A1P27658 BACH1-201ENST00000286800 5669 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
COL8A1P27658 DNTTIP2-202ENST00000436063 5897 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
COL8A1P27658 RAD17-220ENST00000616683 3057 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
COL8A1P27658 GPR1-201ENST00000407325 2295 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
COL8A1P27658 PLEKHS1-204ENST00000369310 2046 ntAPPRIS ALT2 TSL 1 (best) BASIC4.68□□□□□ -1.66
COL8A1P27658 DPP8-210ENST00000559233 2953 ntAPPRIS P4 TSL 2 BASIC4.68□□□□□ -1.66
COL8A1P27658 SLC26A7-201ENST00000276609 5263 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
COL8A1P27658 RFC1-202ENST00000381897 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC4.68□□□□□ -1.66
COL8A1P27658 LINC02203-203ENST00000625989 1600 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
COL8A1P27658 DOCK9-207ENST00000442173 7643 ntAPPRIS ALT2 TSL 5 BASIC4.68□□□□□ -1.66
COL8A1P27658 FAM133A-201ENST00000322139 3292 ntAPPRIS P1 TSL 4 BASIC4.68□□□□□ -1.66
COL8A1P27658 FAM197Y3-202ENST00000427622 2325 ntTSL 5 BASIC4.68□□□□□ -1.66
COL8A1P27658 FAM197Y7-202ENST00000433321 2325 ntTSL 2 BASIC4.68□□□□□ -1.66
COL8A1P27658 RAB3GAP1-207ENST00000539493 3161 ntTSL 5 BASIC4.68□□□□□ -1.66
COL8A1P27658 CTSV-203ENST00000538255 4322 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
COL8A1P27658 LGI1-202ENST00000371418 2381 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
COL8A1P27658 AL158066.1-201ENST00000451298 3796 ntTSL 2 BASIC4.68□□□□□ -1.66
COL8A1P27658 AC103740.1-201ENST00000558888 7427 ntTSL 2 BASIC4.68□□□□□ -1.66
COL8A1P27658 ZBED6-202ENST00000550078 12481 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
COL8A1P27658 AC026523.2-201ENST00000625039 7739 ntBASIC4.68□□□□□ -1.66
COL8A1P27658 RUFY3-201ENST00000226328 4233 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
COL8A1P27658 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
COL8A1P27658 Y_RNA.123-201ENST00000363338 102 ntBASIC4.68□□□□□ -1.66
COL8A1P27658 RNU6-263P-201ENST00000363811 107 ntBASIC4.68□□□□□ -1.66
COL8A1P27658 RNU6-879P-201ENST00000364328 108 ntBASIC4.68□□□□□ -1.66
COL8A1P27658 Y_RNA.230-201ENST00000364348 109 ntBASIC4.68□□□□□ -1.66
COL8A1P27658 RNU4-9P-201ENST00000364951 139 ntBASIC4.68□□□□□ -1.66
COL8A1P27658 AC109779.1-201ENST00000414475 573 ntTSL 5 BASIC4.68□□□□□ -1.66
COL8A1P27658 snoU13.1-201ENST00000459157 104 ntBASIC4.68□□□□□ -1.66
COL8A1P27658 RPS27AP13-201ENST00000498403 237 ntBASIC4.68□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 101.2 ms