Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC3.13□□□□□ -1.91
LMX1BO60663 AC010525.2-201ENST00000590920 195 ntBASIC3.13□□□□□ -1.91
LMX1BO60663 AC021646.1-201ENST00000605469 484 ntBASIC3.13□□□□□ -1.91
LMX1BO60663 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC3.13□□□□□ -1.91
LMX1BO60663 AC135507.2-201ENST00000612443 309 ntBASIC3.13□□□□□ -1.91
LMX1BO60663 AC119674.1-207ENST00000641355 633 ntBASIC3.13□□□□□ -1.91
LMX1BO60663 AC006026.1-201ENST00000444025 1803 ntBASIC3.13□□□□□ -1.91
LMX1BO60663 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
LMX1BO60663 PRO1804-201ENST00000623780 2050 ntBASIC3.13□□□□□ -1.91
LMX1BO60663 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
LMX1BO60663 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.13□□□□□ -1.91
LMX1BO60663 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC3.13□□□□□ -1.91
LMX1BO60663 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.13□□□□□ -1.91
LMX1BO60663 RGS21-201ENST00000417209 1794 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
LMX1BO60663 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC3.12□□□□□ -1.91
LMX1BO60663 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC3.12□□□□□ -1.91
LMX1BO60663 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC3.12□□□□□ -1.91
LMX1BO60663 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC3.12□□□□□ -1.91
LMX1BO60663 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC3.12□□□□□ -1.91
LMX1BO60663 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC3.12□□□□□ -1.91
LMX1BO60663 Y_RNA.142-201ENST00000363491 102 ntBASIC3.12□□□□□ -1.91
LMX1BO60663 Y_RNA.157-201ENST00000363638 102 ntBASIC3.12□□□□□ -1.91
LMX1BO60663 RNA5SP50-201ENST00000363731 107 ntBASIC3.12□□□□□ -1.91
LMX1BO60663 RNA5SP51-201ENST00000364750 119 ntBASIC3.12□□□□□ -1.91
LMX1BO60663 RNU4-48P-201ENST00000365559 182 ntBASIC3.12□□□□□ -1.91
LMX1BO60663 RNU6-767P-201ENST00000384132 107 ntBASIC3.12□□□□□ -1.91
LMX1BO60663 Y_RNA.493-201ENST00000384422 102 ntBASIC3.12□□□□□ -1.91
LMX1BO60663 MIR184-201ENST00000384962 84 ntBASIC3.12□□□□□ -1.91
LMX1BO60663 RNU6-332P-201ENST00000391193 108 ntBASIC3.12□□□□□ -1.91
LMX1BO60663 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
LMX1BO60663 NDUFB4P4-201ENST00000404822 243 ntBASIC3.12□□□□□ -1.91
LMX1BO60663 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC3.12□□□□□ -1.91
LMX1BO60663 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC3.12□□□□□ -1.91
LMX1BO60663 MTCYBP8-201ENST00000422855 651 ntBASIC3.12□□□□□ -1.91
LMX1BO60663 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
LMX1BO60663 AC006989.1-201ENST00000427212 131 ntBASIC3.12□□□□□ -1.91
LMX1BO60663 AL158071.1-201ENST00000430315 461 ntBASIC3.12□□□□□ -1.91
LMX1BO60663 OR4K11P-201ENST00000431829 904 ntBASIC3.12□□□□□ -1.91
LMX1BO60663 TAAR7P-201ENST00000436141 242 ntBASIC3.12□□□□□ -1.91
LMX1BO60663 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC3.12□□□□□ -1.91
LMX1BO60663 DDX3P2-201ENST00000446138 111 ntBASIC3.12□□□□□ -1.91
LMX1BO60663 RPL21P23-201ENST00000446654 460 ntBASIC3.12□□□□□ -1.91
LMX1BO60663 MTND1P9-201ENST00000453775 944 ntBASIC3.12□□□□□ -1.91
LMX1BO60663 AC007967.1-201ENST00000455422 1159 ntBASIC3.12□□□□□ -1.91
LMX1BO60663 LINC01210-201ENST00000465283 625 ntTSL 2 BASIC3.12□□□□□ -1.91
LMX1BO60663 GMFBP1-201ENST00000467831 427 ntBASIC3.12□□□□□ -1.91
LMX1BO60663 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC3.12□□□□□ -1.91
LMX1BO60663 AC093278.1-201ENST00000494700 600 ntBASIC3.12□□□□□ -1.91
LMX1BO60663 EIF4EP3-201ENST00000498782 656 ntBASIC3.12□□□□□ -1.91
LMX1BO60663 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC3.12□□□□□ -1.91
LMX1BO60663 AC097521.1-201ENST00000505488 567 ntTSL 3 BASIC3.12□□□□□ -1.91
LMX1BO60663 NDUFB4P9-201ENST00000511646 388 ntBASIC3.12□□□□□ -1.91
LMX1BO60663 RNU6-798P-201ENST00000516912 103 ntBASIC3.12□□□□□ -1.91
LMX1BO60663 AC022790.1-201ENST00000522872 204 ntBASIC3.12□□□□□ -1.91
LMX1BO60663 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC3.12□□□□□ -1.91
LMX1BO60663 PTP4A1P6-201ENST00000531034 478 ntBASIC3.12□□□□□ -1.91
LMX1BO60663 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC3.12□□□□□ -1.91
LMX1BO60663 AL161713.1-201ENST00000555538 145 ntBASIC3.12□□□□□ -1.91
LMX1BO60663 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC3.12□□□□□ -1.91
LMX1BO60663 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC3.12□□□□□ -1.91
LMX1BO60663 OR4K8P-201ENST00000578842 1048 ntBASIC3.12□□□□□ -1.91
LMX1BO60663 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC3.12□□□□□ -1.91
LMX1BO60663 AP001029.3-201ENST00000588063 596 ntBASIC3.12□□□□□ -1.91
LMX1BO60663 AC010591.1-201ENST00000603941 649 ntBASIC3.12□□□□□ -1.91
LMX1BO60663 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC3.12□□□□□ -1.91
LMX1BO60663 RNVU1-4-201ENST00000612985 164 ntBASIC3.12□□□□□ -1.91
LMX1BO60663 AC010133.1-201ENST00000615809 842 ntBASIC3.12□□□□□ -1.91
LMX1BO60663 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC3.12□□□□□ -1.91
LMX1BO60663 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC3.12□□□□□ -1.91
LMX1BO60663 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC3.12□□□□□ -1.91
LMX1BO60663 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC3.12□□□□□ -1.91
LMX1BO60663 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC3.12□□□□□ -1.91
LMX1BO60663 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
LMX1BO60663 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC3.12□□□□□ -1.91
LMX1BO60663 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
LMX1BO60663 AC004972.1-201ENST00000623934 2209 ntBASIC3.12□□□□□ -1.91
LMX1BO60663 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
LMX1BO60663 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC3.11□□□□□ -1.91
LMX1BO60663 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
LMX1BO60663 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
LMX1BO60663 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC3.11□□□□□ -1.91
LMX1BO60663 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
LMX1BO60663 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.11□□□□□ -1.91
LMX1BO60663 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC3.11□□□□□ -1.91
LMX1BO60663 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
LMX1BO60663 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
LMX1BO60663 AC068647.1-201ENST00000489539 2265 ntBASIC3.11□□□□□ -1.91
LMX1BO60663 AL139276.1-201ENST00000311910 1001 ntBASIC3.11□□□□□ -1.91
LMX1BO60663 Y_RNA.166-201ENST00000363730 102 ntBASIC3.11□□□□□ -1.91
LMX1BO60663 RNU6-996P-201ENST00000365438 107 ntBASIC3.11□□□□□ -1.91
LMX1BO60663 RNU4-20P-201ENST00000365601 151 ntBASIC3.11□□□□□ -1.91
LMX1BO60663 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
LMX1BO60663 MT-TD-201ENST00000387419 68 ntBASIC3.11□□□□□ -1.91
LMX1BO60663 MIR454-201ENST00000390180 115 ntBASIC3.11□□□□□ -1.91
LMX1BO60663 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC3.11□□□□□ -1.91
LMX1BO60663 RNU2-36P-201ENST00000410361 191 ntBASIC3.11□□□□□ -1.91
LMX1BO60663 ATP5A1P2-201ENST00000412323 255 ntBASIC3.11□□□□□ -1.91
LMX1BO60663 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC3.11□□□□□ -1.91
LMX1BO60663 AC017079.2-201ENST00000416102 485 ntBASIC3.11□□□□□ -1.91
LMX1BO60663 DBIP2-201ENST00000419076 262 ntBASIC3.11□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 114.5 ms