Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 UBE2FP1-201ENST00000416536 447 ntBASIC2.91□□□□□ -1.94
VPS54Q9P1Q0 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC2.91□□□□□ -1.94
VPS54Q9P1Q0 AL590383.1-201ENST00000428602 75 ntBASIC2.91□□□□□ -1.94
VPS54Q9P1Q0 AL008629.1-201ENST00000438615 184 ntBASIC2.91□□□□□ -1.94
VPS54Q9P1Q0 RPL39P40-201ENST00000445481 146 ntBASIC2.91□□□□□ -1.94
VPS54Q9P1Q0 UBBP3-201ENST00000445497 241 ntBASIC2.91□□□□□ -1.94
VPS54Q9P1Q0 AC010976.1-211ENST00000454503 644 ntTSL 2 BASIC2.91□□□□□ -1.94
VPS54Q9P1Q0 RPS3P1-201ENST00000456781 192 ntBASIC2.91□□□□□ -1.94
VPS54Q9P1Q0 SETP11-201ENST00000473027 690 ntBASIC2.91□□□□□ -1.94
VPS54Q9P1Q0 AC072039.1-201ENST00000477611 581 ntBASIC2.91□□□□□ -1.94
VPS54Q9P1Q0 RPS15AP36-201ENST00000492022 382 ntBASIC2.91□□□□□ -1.94
VPS54Q9P1Q0 AC027335.1-201ENST00000515377 543 ntTSL 4 BASIC2.91□□□□□ -1.94
VPS54Q9P1Q0 RNU4-29P-201ENST00000515943 174 ntBASIC2.91□□□□□ -1.94
VPS54Q9P1Q0 SCARNA15.2-201ENST00000516409 127 ntBASIC2.91□□□□□ -1.94
VPS54Q9P1Q0 RNU6-928P-201ENST00000516876 104 ntBASIC2.91□□□□□ -1.94
VPS54Q9P1Q0 AC026904.2-201ENST00000521359 537 ntTSL 3 BASIC2.91□□□□□ -1.94
VPS54Q9P1Q0 A2ML1-AS1-201ENST00000537288 452 ntTSL 3 BASIC2.91□□□□□ -1.94
VPS54Q9P1Q0 OR5V1-216ENST00000543825 1048 ntAPPRIS P1 BASIC2.91□□□□□ -1.94
VPS54Q9P1Q0 AC093012.1-203ENST00000548437 450 ntTSL 2 BASIC2.91□□□□□ -1.94
VPS54Q9P1Q0 ISCA1P3-201ENST00000577104 373 ntBASIC2.91□□□□□ -1.94
VPS54Q9P1Q0 AP000811.1-201ENST00000603803 651 ntBASIC2.91□□□□□ -1.94
VPS54Q9P1Q0 AC107214.2-201ENST00000608204 634 ntBASIC2.91□□□□□ -1.94
VPS54Q9P1Q0 AC087683.2-201ENST00000611384 326 ntBASIC2.91□□□□□ -1.94
VPS54Q9P1Q0 AC004696.1-201ENST00000614345 607 ntBASIC2.91□□□□□ -1.94
VPS54Q9P1Q0 ST7-OT4_4.1-201ENST00000614993 213 ntBASIC2.91□□□□□ -1.94
VPS54Q9P1Q0 AC009159.2-201ENST00000617603 606 ntBASIC2.91□□□□□ -1.94
VPS54Q9P1Q0 AC012150.2-201ENST00000621300 544 ntBASIC2.91□□□□□ -1.94
VPS54Q9P1Q0 AC007671.2-201ENST00000637344 619 ntBASIC2.91□□□□□ -1.94
VPS54Q9P1Q0 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
VPS54Q9P1Q0 DDX10P1-201ENST00000448545 1933 ntBASIC2.91□□□□□ -1.94
VPS54Q9P1Q0 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC2.91□□□□□ -1.94
VPS54Q9P1Q0 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC2.91□□□□□ -1.94
VPS54Q9P1Q0 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC2.9□□□□□ -1.94
VPS54Q9P1Q0 AL138713.1-201ENST00000624026 2130 ntBASIC2.9□□□□□ -1.94
VPS54Q9P1Q0 AC092447.7-201ENST00000422212 1621 ntBASIC2.9□□□□□ -1.94
VPS54Q9P1Q0 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC2.9□□□□□ -1.94
VPS54Q9P1Q0 AC107029.2-201ENST00000462011 2305 ntTSL 2 BASIC2.9□□□□□ -1.95
VPS54Q9P1Q0 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC2.9□□□□□ -1.95
VPS54Q9P1Q0 AL593851.1-201ENST00000426171 157 ntBASIC2.9□□□□□ -1.95
VPS54Q9P1Q0 AC078845.1-202ENST00000435996 733 ntTSL 3 BASIC2.9□□□□□ -1.95
VPS54Q9P1Q0 UBE2FP3-201ENST00000436366 524 ntBASIC2.9□□□□□ -1.95
VPS54Q9P1Q0 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC2.9□□□□□ -1.95
VPS54Q9P1Q0 RPL7P36-201ENST00000444633 681 ntBASIC2.9□□□□□ -1.95
VPS54Q9P1Q0 AL008723.1-201ENST00000452181 590 ntTSL 5 BASIC2.9□□□□□ -1.95
VPS54Q9P1Q0 ATG12P2-201ENST00000456830 416 ntBASIC2.9□□□□□ -1.95
VPS54Q9P1Q0 AC126182.1-201ENST00000478134 357 ntBASIC2.9□□□□□ -1.95
VPS54Q9P1Q0 MTCYBP35-201ENST00000503630 1137 ntBASIC2.9□□□□□ -1.95
VPS54Q9P1Q0 AC009901.1-201ENST00000506703 541 ntBASIC2.9□□□□□ -1.95
VPS54Q9P1Q0 RNU6-840P-201ENST00000517275 65 ntBASIC2.9□□□□□ -1.95
VPS54Q9P1Q0 HMGN1P28-201ENST00000521340 364 ntBASIC2.9□□□□□ -1.95
VPS54Q9P1Q0 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC2.9□□□□□ -1.95
VPS54Q9P1Q0 ZNF321P-202ENST00000550843 495 ntBASIC2.9□□□□□ -1.95
VPS54Q9P1Q0 AC124947.2-202ENST00000552735 133 ntBASIC2.9□□□□□ -1.95
VPS54Q9P1Q0 TIMM9-208ENST00000556007 746 ntTSL 3 BASIC2.9□□□□□ -1.95
VPS54Q9P1Q0 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC2.9□□□□□ -1.95
VPS54Q9P1Q0 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC2.9□□□□□ -1.95
VPS54Q9P1Q0 TUG1_2.1-201ENST00000614234 87 ntBASIC2.9□□□□□ -1.95
VPS54Q9P1Q0 MIR6817-201ENST00000615588 66 ntBASIC2.9□□□□□ -1.95
VPS54Q9P1Q0 AP002791.1-201ENST00000623291 381 ntBASIC2.9□□□□□ -1.95
VPS54Q9P1Q0 AC002064.3-201ENST00000623448 346 ntBASIC2.9□□□□□ -1.95
VPS54Q9P1Q0 AC092192.1-201ENST00000633154 1018 ntBASIC2.9□□□□□ -1.95
VPS54Q9P1Q0 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC2.9□□□□□ -1.95
VPS54Q9P1Q0 MIR4275-201ENST00000636486 87 ntBASIC2.9□□□□□ -1.95
VPS54Q9P1Q0 SDAD1P2-201ENST00000441308 2028 ntBASIC2.9□□□□□ -1.95
VPS54Q9P1Q0 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC2.9□□□□□ -1.95
VPS54Q9P1Q0 FAM35BP-202ENST00000497389 3337 ntBASIC2.9□□□□□ -1.95
VPS54Q9P1Q0 CCT4P2-201ENST00000233836 1548 ntBASIC2.89□□□□□ -1.95
VPS54Q9P1Q0 RNA5SP68-201ENST00000363885 119 ntBASIC2.89□□□□□ -1.95
VPS54Q9P1Q0 RNU6-270P-201ENST00000364131 105 ntBASIC2.89□□□□□ -1.95
VPS54Q9P1Q0 MDM4-202ENST00000367180 547 ntTSL 3 BASIC2.89□□□□□ -1.95
VPS54Q9P1Q0 Y_RNA.510-201ENST00000384511 114 ntBASIC2.89□□□□□ -1.95
VPS54Q9P1Q0 RPL17P50-201ENST00000396131 546 ntBASIC2.89□□□□□ -1.95
VPS54Q9P1Q0 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC2.89□□□□□ -1.95
VPS54Q9P1Q0 RAP1BP1-201ENST00000412709 553 ntBASIC2.89□□□□□ -1.95
VPS54Q9P1Q0 SPA17P1-201ENST00000416656 452 ntBASIC2.89□□□□□ -1.95
VPS54Q9P1Q0 DNAJA1P2-201ENST00000421360 1197 ntBASIC2.89□□□□□ -1.95
VPS54Q9P1Q0 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC2.89□□□□□ -1.95
VPS54Q9P1Q0 AC104653.2-201ENST00000435407 416 ntTSL 3 BASIC2.89□□□□□ -1.95
VPS54Q9P1Q0 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC2.89□□□□□ -1.95
VPS54Q9P1Q0 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC2.89□□□□□ -1.95
VPS54Q9P1Q0 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC2.89□□□□□ -1.95
VPS54Q9P1Q0 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC2.89□□□□□ -1.95
VPS54Q9P1Q0 snoU13.28-201ENST00000459235 104 ntBASIC2.89□□□□□ -1.95
VPS54Q9P1Q0 LINC00888-204ENST00000487386 421 ntBASIC2.89□□□□□ -1.95
VPS54Q9P1Q0 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC2.89□□□□□ -1.95
VPS54Q9P1Q0 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC2.89□□□□□ -1.95
VPS54Q9P1Q0 RN7SKP24-201ENST00000515888 284 ntBASIC2.89□□□□□ -1.95
VPS54Q9P1Q0 RNA5SP148-201ENST00000516527 94 ntBASIC2.89□□□□□ -1.95
VPS54Q9P1Q0 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC2.89□□□□□ -1.95
VPS54Q9P1Q0 NAP1L1P1-201ENST00000524793 1063 ntBASIC2.89□□□□□ -1.95
VPS54Q9P1Q0 AC068587.4-201ENST00000533893 186 ntBASIC2.89□□□□□ -1.95
VPS54Q9P1Q0 KLRF2-201ENST00000535540 731 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
VPS54Q9P1Q0 AL133166.1-201ENST00000551040 1034 ntTSL 4 BASIC2.89□□□□□ -1.95
VPS54Q9P1Q0 AL157955.1-201ENST00000554433 331 ntTSL 3 BASIC2.89□□□□□ -1.95
VPS54Q9P1Q0 PSMA4-204ENST00000558094 651 ntTSL 3 BASIC2.89□□□□□ -1.95
VPS54Q9P1Q0 AC009094.1-201ENST00000564443 426 ntBASIC2.89□□□□□ -1.95
VPS54Q9P1Q0 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC2.89□□□□□ -1.95
VPS54Q9P1Q0 OR5H6-203ENST00000642105 978 ntBASIC2.89□□□□□ -1.95
VPS54Q9P1Q0 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC2.89□□□□□ -1.95
VPS54Q9P1Q0 OFD1P6Y-202ENST00000451061 2724 ntBASIC2.89□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 126.3 ms