Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 RPL21P13-201ENST00000488305 481 ntBASIC3.36□□□□□ -1.87
PCDH9Q9HC56 AC023194.1-201ENST00000493084 308 ntBASIC3.36□□□□□ -1.87
PCDH9Q9HC56 RPL7P23-201ENST00000493874 747 ntBASIC3.36□□□□□ -1.87
PCDH9Q9HC56 AC093278.1-201ENST00000494700 600 ntBASIC3.36□□□□□ -1.87
PCDH9Q9HC56 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC3.36□□□□□ -1.87
PCDH9Q9HC56 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC3.36□□□□□ -1.87
PCDH9Q9HC56 AP000790.2-201ENST00000534388 522 ntTSL 3 BASIC3.36□□□□□ -1.87
PCDH9Q9HC56 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC3.36□□□□□ -1.87
PCDH9Q9HC56 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC3.36□□□□□ -1.87
PCDH9Q9HC56 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC3.36□□□□□ -1.87
PCDH9Q9HC56 TPRKBP2-201ENST00000565969 475 ntBASIC3.36□□□□□ -1.87
PCDH9Q9HC56 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC3.36□□□□□ -1.87
PCDH9Q9HC56 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC3.36□□□□□ -1.87
PCDH9Q9HC56 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC3.36□□□□□ -1.87
PCDH9Q9HC56 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC3.36□□□□□ -1.87
PCDH9Q9HC56 AL157786.1-204ENST00000594870 506 ntTSL 3 BASIC3.36□□□□□ -1.87
PCDH9Q9HC56 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC3.36□□□□□ -1.87
PCDH9Q9HC56 MIR7975-201ENST00000619350 68 ntBASIC3.36□□□□□ -1.87
PCDH9Q9HC56 AC073534.2-201ENST00000620377 381 ntBASIC3.36□□□□□ -1.87
PCDH9Q9HC56 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC3.36□□□□□ -1.87
PCDH9Q9HC56 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC3.36□□□□□ -1.87
PCDH9Q9HC56 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3.36□□□□□ -1.87
PCDH9Q9HC56 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC3.36□□□□□ -1.87
PCDH9Q9HC56 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC3.36□□□□□ -1.87
PCDH9Q9HC56 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC3.36□□□□□ -1.87
PCDH9Q9HC56 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.36□□□□□ -1.87
PCDH9Q9HC56 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.36□□□□□ -1.87
PCDH9Q9HC56 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
PCDH9Q9HC56 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.35□□□□□ -1.87
PCDH9Q9HC56 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
PCDH9Q9HC56 Z83843.1-201ENST00000604070 3685 ntBASIC3.35□□□□□ -1.87
PCDH9Q9HC56 Y_RNA.1-201ENST00000352915 104 ntBASIC3.35□□□□□ -1.87
PCDH9Q9HC56 RNU6-169P-201ENST00000365336 107 ntBASIC3.35□□□□□ -1.87
PCDH9Q9HC56 MTCO3P40-201ENST00000392516 676 ntBASIC3.35□□□□□ -1.87
PCDH9Q9HC56 AL590002.1-201ENST00000406554 418 ntBASIC3.35□□□□□ -1.87
PCDH9Q9HC56 RPS3AP24-201ENST00000407896 734 ntBASIC3.35□□□□□ -1.87
PCDH9Q9HC56 RPL32P35-201ENST00000415214 394 ntBASIC3.35□□□□□ -1.87
PCDH9Q9HC56 AC099677.1-201ENST00000420575 175 ntBASIC3.35□□□□□ -1.87
PCDH9Q9HC56 EIF1P1-201ENST00000421436 341 ntBASIC3.35□□□□□ -1.87
PCDH9Q9HC56 AC137499.1-201ENST00000427602 88 ntBASIC3.35□□□□□ -1.87
PCDH9Q9HC56 DPPA2P1-201ENST00000428060 556 ntBASIC3.35□□□□□ -1.87
PCDH9Q9HC56 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC3.35□□□□□ -1.87
PCDH9Q9HC56 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC3.35□□□□□ -1.87
PCDH9Q9HC56 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC3.35□□□□□ -1.87
PCDH9Q9HC56 HIGD1AP11-201ENST00000438361 280 ntBASIC3.35□□□□□ -1.87
PCDH9Q9HC56 AC093156.1-201ENST00000440382 670 ntBASIC3.35□□□□□ -1.87
PCDH9Q9HC56 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC3.35□□□□□ -1.87
PCDH9Q9HC56 AL121871.1-201ENST00000443413 436 ntBASIC3.35□□□□□ -1.87
PCDH9Q9HC56 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC3.35□□□□□ -1.87
PCDH9Q9HC56 AC132479.1-201ENST00000449160 144 ntBASIC3.35□□□□□ -1.87
PCDH9Q9HC56 AC004062.1-201ENST00000509926 645 ntBASIC3.35□□□□□ -1.87
PCDH9Q9HC56 AC108467.1-201ENST00000515623 672 ntTSL 3 BASIC3.35□□□□□ -1.87
PCDH9Q9HC56 RNU6-64P-201ENST00000517119 105 ntBASIC3.35□□□□□ -1.87
PCDH9Q9HC56 RNU6-1073P-201ENST00000517182 106 ntBASIC3.35□□□□□ -1.87
PCDH9Q9HC56 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC3.35□□□□□ -1.87
PCDH9Q9HC56 AC245166.1-201ENST00000521012 253 ntBASIC3.35□□□□□ -1.87
PCDH9Q9HC56 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC3.35□□□□□ -1.87
PCDH9Q9HC56 AC018630.1-201ENST00000541376 925 ntBASIC3.35□□□□□ -1.87
PCDH9Q9HC56 SUB1P2-201ENST00000556401 297 ntBASIC3.35□□□□□ -1.87
PCDH9Q9HC56 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC3.35□□□□□ -1.87
PCDH9Q9HC56 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC3.35□□□□□ -1.87
PCDH9Q9HC56 SNORD84-203ENST00000584275 78 ntBASIC3.35□□□□□ -1.87
PCDH9Q9HC56 AC097467.3-204ENST00000595229 827 ntTSL 5 BASIC3.35□□□□□ -1.87
PCDH9Q9HC56 AL162713.1-201ENST00000604480 262 ntBASIC3.35□□□□□ -1.87
PCDH9Q9HC56 MIR92B-201ENST00000607575 96 ntBASIC3.35□□□□□ -1.87
PCDH9Q9HC56 AC092954.2-201ENST00000609103 430 ntBASIC3.35□□□□□ -1.87
PCDH9Q9HC56 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC3.35□□□□□ -1.87
PCDH9Q9HC56 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC3.35□□□□□ -1.87
PCDH9Q9HC56 AC091903.1-201ENST00000624322 454 ntBASIC3.35□□□□□ -1.87
PCDH9Q9HC56 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC3.35□□□□□ -1.87
PCDH9Q9HC56 AC005832.2-201ENST00000538921 1430 ntBASIC3.35□□□□□ -1.87
PCDH9Q9HC56 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
PCDH9Q9HC56 AP001350.1-201ENST00000601906 1524 ntBASIC3.34□□□□□ -1.87
PCDH9Q9HC56 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.34□□□□□ -1.87
PCDH9Q9HC56 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC3.34□□□□□ -1.87
PCDH9Q9HC56 MIR148B-201ENST00000362252 99 ntBASIC3.34□□□□□ -1.87
PCDH9Q9HC56 U3.6-201ENST00000363622 211 ntBASIC3.34□□□□□ -1.87
PCDH9Q9HC56 RNU4-12P-201ENST00000365233 139 ntBASIC3.34□□□□□ -1.87
PCDH9Q9HC56 RNU6-754P-201ENST00000391166 107 ntBASIC3.34□□□□□ -1.87
PCDH9Q9HC56 SNORD115-47-201ENST00000391226 86 ntBASIC3.34□□□□□ -1.87
PCDH9Q9HC56 CALM2P3-201ENST00000400429 449 ntBASIC3.34□□□□□ -1.87
PCDH9Q9HC56 BTF3P7-201ENST00000407097 488 ntBASIC3.34□□□□□ -1.87
PCDH9Q9HC56 RNU4-65P-201ENST00000410473 140 ntBASIC3.34□□□□□ -1.87
PCDH9Q9HC56 AC004014.1-201ENST00000413406 538 ntTSL 4 BASIC3.34□□□□□ -1.87
PCDH9Q9HC56 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC3.34□□□□□ -1.87
PCDH9Q9HC56 ISCA1P1-201ENST00000426679 387 ntBASIC3.34□□□□□ -1.87
PCDH9Q9HC56 AL139415.2-201ENST00000431968 163 ntBASIC3.34□□□□□ -1.87
PCDH9Q9HC56 RPL23AP30-201ENST00000432419 501 ntBASIC3.34□□□□□ -1.87
PCDH9Q9HC56 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC3.34□□□□□ -1.87
PCDH9Q9HC56 PRSS3P4-201ENST00000453323 162 ntBASIC3.34□□□□□ -1.87
PCDH9Q9HC56 AC126182.1-201ENST00000478134 357 ntBASIC3.34□□□□□ -1.87
PCDH9Q9HC56 HMGB1P29-201ENST00000505659 499 ntBASIC3.34□□□□□ -1.87
PCDH9Q9HC56 MLLT10P2-201ENST00000506434 249 ntBASIC3.34□□□□□ -1.87
PCDH9Q9HC56 MTND4LP22-201ENST00000508209 276 ntBASIC3.34□□□□□ -1.87
PCDH9Q9HC56 KLHL2P1-201ENST00000508691 521 ntBASIC3.34□□□□□ -1.87
PCDH9Q9HC56 AC009646.1-201ENST00000510455 318 ntBASIC3.34□□□□□ -1.87
PCDH9Q9HC56 AC011352.1-201ENST00000512300 793 ntBASIC3.34□□□□□ -1.87
PCDH9Q9HC56 AC010265.1-201ENST00000513509 211 ntBASIC3.34□□□□□ -1.87
PCDH9Q9HC56 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC3.34□□□□□ -1.87
PCDH9Q9HC56 OR5V1-216ENST00000543825 1048 ntAPPRIS P1 BASIC3.34□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 131.6 ms