Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 AC079395.3-201ENST00000615161 484 ntBASIC2.3□□□□□ -2.04
USP42Q9H9J4 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
USP42Q9H9J4 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
USP42Q9H9J4 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC2.3□□□□□ -2.04
USP42Q9H9J4 RNU6-461P-201ENST00000364195 107 ntBASIC2.29□□□□□ -2.04
USP42Q9H9J4 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC2.29□□□□□ -2.04
USP42Q9H9J4 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC2.29□□□□□ -2.04
USP42Q9H9J4 RNU6-1035P-201ENST00000384477 107 ntBASIC2.29□□□□□ -2.04
USP42Q9H9J4 SUMO2P12-201ENST00000405924 140 ntBASIC2.29□□□□□ -2.04
USP42Q9H9J4 UBE2V1P15-201ENST00000407776 448 ntBASIC2.29□□□□□ -2.04
USP42Q9H9J4 AC099548.1-201ENST00000421443 426 ntBASIC2.29□□□□□ -2.04
USP42Q9H9J4 AL590383.1-201ENST00000428602 75 ntBASIC2.29□□□□□ -2.04
USP42Q9H9J4 LINC01052-201ENST00000437777 496 ntTSL 3 BASIC2.29□□□□□ -2.04
USP42Q9H9J4 RPL26P6-201ENST00000440913 438 ntBASIC2.29□□□□□ -2.04
USP42Q9H9J4 VN1R10P-201ENST00000447106 875 ntBASIC2.29□□□□□ -2.04
USP42Q9H9J4 MTND2P24-201ENST00000453434 806 ntBASIC2.29□□□□□ -2.04
USP42Q9H9J4 AL163540.1-201ENST00000485382 386 ntBASIC2.29□□□□□ -2.04
USP42Q9H9J4 AL049874.1-201ENST00000489560 388 ntBASIC2.29□□□□□ -2.04
USP42Q9H9J4 AC104803.1-201ENST00000506917 529 ntTSL 3 BASIC2.29□□□□□ -2.04
USP42Q9H9J4 AC113155.1-201ENST00000511141 769 ntBASIC2.29□□□□□ -2.04
USP42Q9H9J4 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC2.29□□□□□ -2.04
USP42Q9H9J4 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC2.29□□□□□ -2.04
USP42Q9H9J4 LRRTM2-203ENST00000521094 1182 ntTSL 1 (best) BASIC2.29□□□□□ -2.04
USP42Q9H9J4 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC2.29□□□□□ -2.04
USP42Q9H9J4 AL133372.3-201ENST00000553082 821 ntTSL 3 BASIC2.29□□□□□ -2.04
USP42Q9H9J4 TRAV28-201ENST00000557548 323 ntBASIC2.29□□□□□ -2.04
USP42Q9H9J4 MIR4658-201ENST00000584344 65 ntBASIC2.29□□□□□ -2.04
USP42Q9H9J4 AL445493.3-201ENST00000619568 477 ntBASIC2.29□□□□□ -2.04
USP42Q9H9J4 MIR7515-201ENST00000637837 67 ntBASIC2.29□□□□□ -2.04
USP42Q9H9J4 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC2.29□□□□□ -2.04
USP42Q9H9J4 CR848007.1-201ENST00000442354 1699 ntBASIC2.29□□□□□ -2.04
USP42Q9H9J4 AC093536.2-201ENST00000565257 1406 ntBASIC2.28□□□□□ -2.04
USP42Q9H9J4 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC2.28□□□□□ -2.04
USP42Q9H9J4 Y_RNA.508-201ENST00000384502 114 ntBASIC2.28□□□□□ -2.04
USP42Q9H9J4 RNU6-1072P-201ENST00000384703 107 ntBASIC2.28□□□□□ -2.04
USP42Q9H9J4 RNU6-443P-201ENST00000384780 107 ntBASIC2.28□□□□□ -2.04
USP42Q9H9J4 MIR499A-201ENST00000384903 122 ntBASIC2.28□□□□□ -2.04
USP42Q9H9J4 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC2.28□□□□□ -2.04
USP42Q9H9J4 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC2.28□□□□□ -2.04
USP42Q9H9J4 AL356867.1-201ENST00000429623 299 ntBASIC2.28□□□□□ -2.04
USP42Q9H9J4 AL714022.1-201ENST00000439897 151 ntBASIC2.28□□□□□ -2.04
USP42Q9H9J4 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC2.28□□□□□ -2.04
USP42Q9H9J4 AC092155.1-201ENST00000444672 573 ntTSL 4 BASIC2.28□□□□□ -2.04
USP42Q9H9J4 RNU7-26P-201ENST00000458980 63 ntBASIC2.28□□□□□ -2.04
USP42Q9H9J4 AC116337.2-201ENST00000477662 156 ntBASIC2.28□□□□□ -2.04
USP42Q9H9J4 AC091860.1-201ENST00000505723 432 ntBASIC2.28□□□□□ -2.04
USP42Q9H9J4 LINC02428-201ENST00000508099 527 ntTSL 5 BASIC2.28□□□□□ -2.04
USP42Q9H9J4 SNORA48.10-201ENST00000516965 160 ntBASIC2.28□□□□□ -2.04
USP42Q9H9J4 AC011131.1-201ENST00000521224 252 ntTSL 2 BASIC2.28□□□□□ -2.04
USP42Q9H9J4 AC025755.1-201ENST00000521306 278 ntBASIC2.28□□□□□ -2.04
USP42Q9H9J4 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC2.28□□□□□ -2.04
USP42Q9H9J4 ST20-203ENST00000562759 694 ntAPPRIS P1 TSL 2 BASIC2.28□□□□□ -2.04
USP42Q9H9J4 SUB1P3-201ENST00000564581 315 ntBASIC2.28□□□□□ -2.04
USP42Q9H9J4 AC107982.2-201ENST00000577360 463 ntTSL 5 BASIC2.28□□□□□ -2.04
USP42Q9H9J4 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.04
USP42Q9H9J4 RPL36A-210ENST00000614077 881 ntTSL 1 (best) BASIC2.28□□□□□ -2.04
USP42Q9H9J4 AC080188.3-201ENST00000624842 748 ntBASIC2.28□□□□□ -2.04
USP42Q9H9J4 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC2.28□□□□□ -2.04
USP42Q9H9J4 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC2.28□□□□□ -2.04
USP42Q9H9J4 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC2.28□□□□□ -2.05
USP42Q9H9J4 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.27□□□□□ -2.05
USP42Q9H9J4 AKAP14-201ENST00000334356 608 ntAPPRIS ALT2 TSL 5 BASIC2.27□□□□□ -2.05
USP42Q9H9J4 RNU6-492P-201ENST00000363035 104 ntBASIC2.27□□□□□ -2.05
USP42Q9H9J4 RNU6-353P-201ENST00000364266 108 ntBASIC2.27□□□□□ -2.05
USP42Q9H9J4 TAS2R15P-201ENST00000390674 928 ntBASIC2.27□□□□□ -2.05
USP42Q9H9J4 AP002784.2-201ENST00000397300 549 ntBASIC2.27□□□□□ -2.05
USP42Q9H9J4 AL391839.1-201ENST00000417447 265 ntTSL 2 BASIC2.27□□□□□ -2.05
USP42Q9H9J4 AC092634.6-201ENST00000418558 192 ntBASIC2.27□□□□□ -2.05
USP42Q9H9J4 RPS15AP12-201ENST00000419498 388 ntBASIC2.27□□□□□ -2.05
USP42Q9H9J4 OFD1P2Y-201ENST00000421895 1149 ntBASIC2.27□□□□□ -2.05
USP42Q9H9J4 AC019178.2-201ENST00000423595 505 ntBASIC2.27□□□□□ -2.05
USP42Q9H9J4 AC116035.1-201ENST00000431057 517 ntTSL 3 BASIC2.27□□□□□ -2.05
USP42Q9H9J4 AC017048.2-201ENST00000431455 822 ntTSL 3 BASIC2.27□□□□□ -2.05
USP42Q9H9J4 AL512661.1-201ENST00000434586 1253 ntBASIC2.27□□□□□ -2.05
USP42Q9H9J4 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC2.27□□□□□ -2.05
USP42Q9H9J4 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC2.27□□□□□ -2.05
USP42Q9H9J4 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC2.27□□□□□ -2.05
USP42Q9H9J4 RNU7-23P-201ENST00000459465 62 ntBASIC2.27□□□□□ -2.05
USP42Q9H9J4 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC2.27□□□□□ -2.05
USP42Q9H9J4 AC135721.1-201ENST00000497954 479 ntBASIC2.27□□□□□ -2.05
USP42Q9H9J4 MTCYBP17-201ENST00000503579 789 ntBASIC2.27□□□□□ -2.05
USP42Q9H9J4 AC096577.1-203ENST00000506386 541 ntTSL 3 BASIC2.27□□□□□ -2.05
USP42Q9H9J4 TRMT112P2-201ENST00000512910 132 ntBASIC2.27□□□□□ -2.05
USP42Q9H9J4 TET2-AS1-201ENST00000515414 537 ntTSL 5 BASIC2.27□□□□□ -2.05
USP42Q9H9J4 AP003066.2-201ENST00000529375 555 ntBASIC2.27□□□□□ -2.05
USP42Q9H9J4 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC2.27□□□□□ -2.05
USP42Q9H9J4 DNAJC19P9-201ENST00000555084 351 ntBASIC2.27□□□□□ -2.05
USP42Q9H9J4 RPS3AP4-201ENST00000555161 764 ntBASIC2.27□□□□□ -2.05
USP42Q9H9J4 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC2.27□□□□□ -2.05
USP42Q9H9J4 MYL12BP1-201ENST00000569826 507 ntBASIC2.27□□□□□ -2.05
USP42Q9H9J4 DUXAP11-201ENST00000603858 526 ntBASIC2.27□□□□□ -2.05
USP42Q9H9J4 AL035411.2-201ENST00000604022 421 ntBASIC2.27□□□□□ -2.05
USP42Q9H9J4 AP003973.1-201ENST00000604639 691 ntBASIC2.27□□□□□ -2.05
USP42Q9H9J4 SDAD1P2-201ENST00000441308 2028 ntBASIC2.27□□□□□ -2.05
USP42Q9H9J4 RNU6-839P-201ENST00000363347 108 ntBASIC2.26□□□□□ -2.05
USP42Q9H9J4 RPS3AP24-201ENST00000407896 734 ntBASIC2.26□□□□□ -2.05
USP42Q9H9J4 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC2.26□□□□□ -2.05
USP42Q9H9J4 ABCC5-AS1-201ENST00000422946 469 ntTSL 2 BASIC2.26□□□□□ -2.05
USP42Q9H9J4 RAC1P8-201ENST00000427086 527 ntBASIC2.26□□□□□ -2.05
USP42Q9H9J4 HMGB1P27-201ENST00000431429 603 ntBASIC2.26□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 96.3 ms