Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 SNORD116-6-201ENST00000384711 96 ntBASIC2.85□□□□□ -1.95
TNFRSF4P43489 SNORA46-201ENST00000384762 135 ntBASIC2.85□□□□□ -1.95
TNFRSF4P43489 MIR19A-201ENST00000384878 82 ntBASIC2.85□□□□□ -1.95
TNFRSF4P43489 RNA5SP21-201ENST00000410917 96 ntBASIC2.85□□□□□ -1.95
TNFRSF4P43489 RNU6-920P-201ENST00000410926 92 ntBASIC2.85□□□□□ -1.95
TNFRSF4P43489 RPL23AP39-201ENST00000415533 405 ntBASIC2.85□□□□□ -1.95
TNFRSF4P43489 AC245054.2-201ENST00000415639 319 ntBASIC2.85□□□□□ -1.95
TNFRSF4P43489 AC009518.2-201ENST00000418056 731 ntBASIC2.85□□□□□ -1.95
TNFRSF4P43489 GS1-594A7.3-201ENST00000421585 574 ntTSL 2 BASIC2.85□□□□□ -1.95
TNFRSF4P43489 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC2.85□□□□□ -1.95
TNFRSF4P43489 RAB6C-AS1-202ENST00000433431 123 ntBASIC2.85□□□□□ -1.95
TNFRSF4P43489 FTH1P1-201ENST00000437933 532 ntBASIC2.85□□□□□ -1.95
TNFRSF4P43489 Z82210.1-201ENST00000440037 231 ntBASIC2.85□□□□□ -1.95
TNFRSF4P43489 BMI1P1-201ENST00000445879 941 ntBASIC2.85□□□□□ -1.95
TNFRSF4P43489 ELOCP30-201ENST00000447108 299 ntBASIC2.85□□□□□ -1.95
TNFRSF4P43489 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC2.85□□□□□ -1.95
TNFRSF4P43489 ZNF114P1-201ENST00000453500 292 ntBASIC2.85□□□□□ -1.95
TNFRSF4P43489 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC2.85□□□□□ -1.95
TNFRSF4P43489 MTND3P7-201ENST00000474435 343 ntBASIC2.85□□□□□ -1.95
TNFRSF4P43489 AL135752.1-201ENST00000479477 471 ntBASIC2.85□□□□□ -1.95
TNFRSF4P43489 AC093534.1-201ENST00000504977 132 ntBASIC2.85□□□□□ -1.95
TNFRSF4P43489 AC005178.1-201ENST00000508392 440 ntBASIC2.85□□□□□ -1.95
TNFRSF4P43489 OR5BM1P-201ENST00000512021 366 ntBASIC2.85□□□□□ -1.95
TNFRSF4P43489 MEF2C-AS1-208ENST00000512585 741 ntTSL 5 BASIC2.85□□□□□ -1.95
TNFRSF4P43489 RN7SKP43-201ENST00000516173 320 ntBASIC2.85□□□□□ -1.95
TNFRSF4P43489 RNU6-390P-201ENST00000516259 103 ntBASIC2.85□□□□□ -1.95
TNFRSF4P43489 AP000907.2-201ENST00000530827 353 ntBASIC2.85□□□□□ -1.95
TNFRSF4P43489 AKIRIN1P1-201ENST00000547384 544 ntBASIC2.85□□□□□ -1.95
TNFRSF4P43489 LINC00640-203ENST00000556479 576 ntTSL 2 BASIC2.85□□□□□ -1.95
TNFRSF4P43489 AL358333.2-201ENST00000556834 529 ntTSL 5 BASIC2.85□□□□□ -1.95
TNFRSF4P43489 TRAV28-201ENST00000557548 323 ntBASIC2.85□□□□□ -1.95
TNFRSF4P43489 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC2.85□□□□□ -1.95
TNFRSF4P43489 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC2.85□□□□□ -1.95
TNFRSF4P43489 AP001004.1-201ENST00000582468 324 ntBASIC2.85□□□□□ -1.95
TNFRSF4P43489 AC097467.3-208ENST00000593486 670 ntTSL 5 BASIC2.85□□□□□ -1.95
TNFRSF4P43489 AC107214.2-201ENST00000608204 634 ntBASIC2.85□□□□□ -1.95
TNFRSF4P43489 NCRUPAR_2.1-201ENST00000616308 99 ntBASIC2.85□□□□□ -1.95
TNFRSF4P43489 AL354810.1-201ENST00000618134 635 ntTSL 3 BASIC2.85□□□□□ -1.95
TNFRSF4P43489 C3orf85-208ENST00000622536 925 ntAPPRIS P5 TSL 5 BASIC2.85□□□□□ -1.95
TNFRSF4P43489 VPS8-228ENST00000628962 207 ntTSL 5 BASIC2.85□□□□□ -1.95
TNFRSF4P43489 AL359693.1-201ENST00000614959 2407 ntBASIC2.85□□□□□ -1.95
TNFRSF4P43489 EVI2B-202ENST00000577894 1597 ntAPPRIS P1 TSL 2 BASIC2.85□□□□□ -1.95
TNFRSF4P43489 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
TNFRSF4P43489 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
TNFRSF4P43489 AL445523.1-201ENST00000451184 1362 ntBASIC2.85□□□□□ -1.95
TNFRSF4P43489 AC107029.2-201ENST00000462011 2305 ntTSL 2 BASIC2.85□□□□□ -1.95
TNFRSF4P43489 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
TNFRSF4P43489 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
TNFRSF4P43489 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.95
TNFRSF4P43489 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC2.84□□□□□ -1.95
TNFRSF4P43489 AC091564.4-201ENST00000533934 2194 ntBASIC2.84□□□□□ -1.95
TNFRSF4P43489 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
TNFRSF4P43489 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC2.84□□□□□ -1.95
TNFRSF4P43489 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC2.84□□□□□ -1.95
TNFRSF4P43489 RNU6-500P-201ENST00000362349 107 ntBASIC2.84□□□□□ -1.95
TNFRSF4P43489 RNY4P24-201ENST00000362735 96 ntBASIC2.84□□□□□ -1.95
TNFRSF4P43489 RNU1-112P-201ENST00000364401 164 ntBASIC2.84□□□□□ -1.95
TNFRSF4P43489 RNU6-198P-201ENST00000384258 104 ntBASIC2.84□□□□□ -1.95
TNFRSF4P43489 RNU2-52P-201ENST00000410680 190 ntBASIC2.84□□□□□ -1.95
TNFRSF4P43489 RN7SKP58-201ENST00000411010 305 ntBASIC2.84□□□□□ -1.95
TNFRSF4P43489 AL513331.1-201ENST00000411908 397 ntBASIC2.84□□□□□ -1.95
TNFRSF4P43489 RPL21P24-201ENST00000413752 448 ntBASIC2.84□□□□□ -1.95
TNFRSF4P43489 AL451054.2-201ENST00000420896 202 ntBASIC2.84□□□□□ -1.95
TNFRSF4P43489 TRIAP1P1-201ENST00000427062 225 ntBASIC2.84□□□□□ -1.95
TNFRSF4P43489 AC007919.1-201ENST00000429380 217 ntBASIC2.84□□□□□ -1.95
TNFRSF4P43489 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC2.84□□□□□ -1.95
TNFRSF4P43489 AL355997.1-202ENST00000454361 610 ntTSL 3 BASIC2.84□□□□□ -1.95
TNFRSF4P43489 ANKRD62P1-PARP4P3-201ENST00000456726 1181 ntTSL 5 BASIC2.84□□□□□ -1.95
TNFRSF4P43489 LINC01445-202ENST00000458615 679 ntTSL 2 BASIC2.84□□□□□ -1.95
TNFRSF4P43489 snoU13.28-201ENST00000459235 104 ntBASIC2.84□□□□□ -1.95
TNFRSF4P43489 RPL23AP41-201ENST00000484754 458 ntBASIC2.84□□□□□ -1.95
TNFRSF4P43489 LARP1BP2-201ENST00000486594 519 ntBASIC2.84□□□□□ -1.95
TNFRSF4P43489 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC2.84□□□□□ -1.95
TNFRSF4P43489 AC114781.4-201ENST00000513707 639 ntBASIC2.84□□□□□ -1.95
TNFRSF4P43489 HPRT1P3-201ENST00000539521 576 ntBASIC2.84□□□□□ -1.95
TNFRSF4P43489 AC013417.1-201ENST00000549896 271 ntTSL 5 BASIC2.84□□□□□ -1.95
TNFRSF4P43489 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC2.84□□□□□ -1.95
TNFRSF4P43489 AC135628.1-201ENST00000568867 534 ntBASIC2.84□□□□□ -1.95
TNFRSF4P43489 AC005951.1-201ENST00000576706 485 ntBASIC2.84□□□□□ -1.95
TNFRSF4P43489 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC2.84□□□□□ -1.95
TNFRSF4P43489 MTCYBP22-201ENST00000603788 447 ntBASIC2.84□□□□□ -1.95
TNFRSF4P43489 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC2.84□□□□□ -1.95
TNFRSF4P43489 AC103710.1-201ENST00000610003 901 ntBASIC2.84□□□□□ -1.95
TNFRSF4P43489 AC004908.3-201ENST00000610248 625 ntBASIC2.84□□□□□ -1.95
TNFRSF4P43489 AL161629.2-201ENST00000615347 275 ntBASIC2.84□□□□□ -1.95
TNFRSF4P43489 U7.8-201ENST00000619968 63 ntBASIC2.84□□□□□ -1.95
TNFRSF4P43489 MIR7153-201ENST00000637758 57 ntBASIC2.84□□□□□ -1.95
TNFRSF4P43489 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC2.84□□□□□ -1.95
TNFRSF4P43489 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC2.84□□□□□ -1.95
TNFRSF4P43489 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.96
TNFRSF4P43489 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC2.84□□□□□ -1.96
TNFRSF4P43489 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC2.84□□□□□ -1.96
TNFRSF4P43489 GTPBP8-205ENST00000473129 1518 ntTSL 2 BASIC2.83□□□□□ -1.96
TNFRSF4P43489 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC2.83□□□□□ -1.96
TNFRSF4P43489 AL355596.1-201ENST00000565399 3996 ntBASIC2.83□□□□□ -1.96
TNFRSF4P43489 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
TNFRSF4P43489 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
TNFRSF4P43489 SPA17-201ENST00000227135 853 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
TNFRSF4P43489 RNU4-82P-201ENST00000362443 140 ntBASIC2.83□□□□□ -1.96
TNFRSF4P43489 RNU6-859P-201ENST00000362728 107 ntBASIC2.83□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 162.1 ms