Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
DKK3Q9UBP4 RNU6-754P-201ENST00000391166 107 ntBASIC3.97□□□□□ -1.77
DKK3Q9UBP4 AP000567.1-201ENST00000406413 156 ntBASIC3.97□□□□□ -1.77
DKK3Q9UBP4 RPL35AP22-201ENST00000436855 335 ntBASIC3.97□□□□□ -1.77
DKK3Q9UBP4 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC3.97□□□□□ -1.77
DKK3Q9UBP4 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC3.97□□□□□ -1.77
DKK3Q9UBP4 VN1R17P-201ENST00000472048 1090 ntBASIC3.97□□□□□ -1.77
DKK3Q9UBP4 AC114797.1-201ENST00000514003 728 ntBASIC3.97□□□□□ -1.77
DKK3Q9UBP4 AC087369.1-201ENST00000520775 996 ntBASIC3.97□□□□□ -1.77
DKK3Q9UBP4 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
DKK3Q9UBP4 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC3.97□□□□□ -1.77
DKK3Q9UBP4 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC3.97□□□□□ -1.77
DKK3Q9UBP4 AC010591.1-201ENST00000603941 649 ntBASIC3.97□□□□□ -1.77
DKK3Q9UBP4 AL773545.4-201ENST00000637262 310 ntBASIC3.97□□□□□ -1.77
DKK3Q9UBP4 AC099654.10-201ENST00000640395 161 ntBASIC3.97□□□□□ -1.77
DKK3Q9UBP4 AL513478.4-201ENST00000641636 310 ntBASIC3.97□□□□□ -1.77
DKK3Q9UBP4 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
DKK3Q9UBP4 MTND4P23-201ENST00000447723 1363 ntBASIC3.97□□□□□ -1.77
DKK3Q9UBP4 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
DKK3Q9UBP4 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.77
DKK3Q9UBP4 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.77
DKK3Q9UBP4 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC3.96□□□□□ -1.77
DKK3Q9UBP4 RIOK3P1-201ENST00000418778 1528 ntBASIC3.96□□□□□ -1.78
DKK3Q9UBP4 MTND5P17-201ENST00000418405 1603 ntBASIC3.96□□□□□ -1.78
DKK3Q9UBP4 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
DKK3Q9UBP4 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC3.96□□□□□ -1.78
DKK3Q9UBP4 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
DKK3Q9UBP4 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
DKK3Q9UBP4 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.96□□□□□ -1.78
DKK3Q9UBP4 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC3.96□□□□□ -1.78
DKK3Q9UBP4 TCEAL7-202ENST00000372666 852 ntAPPRIS P1 TSL 2 BASIC3.96□□□□□ -1.78
DKK3Q9UBP4 MIR591-201ENST00000385290 95 ntBASIC3.96□□□□□ -1.78
DKK3Q9UBP4 AL591416.1-201ENST00000404015 867 ntBASIC3.96□□□□□ -1.78
DKK3Q9UBP4 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC3.96□□□□□ -1.78
DKK3Q9UBP4 OR1AA1P-201ENST00000419597 916 ntBASIC3.96□□□□□ -1.78
DKK3Q9UBP4 SDCBPP3-201ENST00000419629 891 ntBASIC3.96□□□□□ -1.78
DKK3Q9UBP4 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC3.96□□□□□ -1.78
DKK3Q9UBP4 OR2AS1P-201ENST00000427827 319 ntBASIC3.96□□□□□ -1.78
DKK3Q9UBP4 VDAC1P3-201ENST00000434069 851 ntBASIC3.96□□□□□ -1.78
DKK3Q9UBP4 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
DKK3Q9UBP4 HMGB1P12-201ENST00000438594 598 ntBASIC3.96□□□□□ -1.78
DKK3Q9UBP4 HMGB1P37-201ENST00000439613 609 ntBASIC3.96□□□□□ -1.78
DKK3Q9UBP4 AC073415.1-201ENST00000449240 153 ntBASIC3.96□□□□□ -1.78
DKK3Q9UBP4 AC005871.1-201ENST00000450247 475 ntTSL 3 BASIC3.96□□□□□ -1.78
DKK3Q9UBP4 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC3.96□□□□□ -1.78
DKK3Q9UBP4 RPL21P11-201ENST00000461458 483 ntBASIC3.96□□□□□ -1.78
DKK3Q9UBP4 AC093278.1-201ENST00000494700 600 ntBASIC3.96□□□□□ -1.78
DKK3Q9UBP4 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC3.96□□□□□ -1.78
DKK3Q9UBP4 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC3.96□□□□□ -1.78
DKK3Q9UBP4 RN7SKP289-201ENST00000517244 295 ntBASIC3.96□□□□□ -1.78
DKK3Q9UBP4 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC3.96□□□□□ -1.78
DKK3Q9UBP4 AP003385.6-201ENST00000531603 374 ntBASIC3.96□□□□□ -1.78
DKK3Q9UBP4 CYCSP30-201ENST00000546447 172 ntBASIC3.96□□□□□ -1.78
DKK3Q9UBP4 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC3.96□□□□□ -1.78
DKK3Q9UBP4 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC3.96□□□□□ -1.78
DKK3Q9UBP4 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC3.96□□□□□ -1.78
DKK3Q9UBP4 RPS3AP23-202ENST00000574601 686 ntBASIC3.96□□□□□ -1.78
DKK3Q9UBP4 MIR3690-201ENST00000580266 75 ntBASIC3.96□□□□□ -1.78
DKK3Q9UBP4 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC3.96□□□□□ -1.78
DKK3Q9UBP4 VN1R80P-201ENST00000597126 338 ntBASIC3.96□□□□□ -1.78
DKK3Q9UBP4 MIR486-1-201ENST00000612171 68 ntBASIC3.96□□□□□ -1.78
DKK3Q9UBP4 AC093838.1-201ENST00000613014 469 ntBASIC3.96□□□□□ -1.78
DKK3Q9UBP4 AL603758.1-201ENST00000618654 241 ntBASIC3.96□□□□□ -1.78
DKK3Q9UBP4 AL354798.1-201ENST00000622505 329 ntBASIC3.96□□□□□ -1.78
DKK3Q9UBP4 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC3.96□□□□□ -1.78
DKK3Q9UBP4 CCT7-217ENST00000626868 249 ntTSL 5 BASIC3.96□□□□□ -1.78
DKK3Q9UBP4 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC3.96□□□□□ -1.78
DKK3Q9UBP4 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
DKK3Q9UBP4 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC3.96□□□□□ -1.78
DKK3Q9UBP4 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC3.96□□□□□ -1.78
DKK3Q9UBP4 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC3.96□□□□□ -1.78
DKK3Q9UBP4 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC3.95□□□□□ -1.78
DKK3Q9UBP4 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC3.95□□□□□ -1.78
DKK3Q9UBP4 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
DKK3Q9UBP4 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC3.95□□□□□ -1.78
DKK3Q9UBP4 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC3.95□□□□□ -1.78
DKK3Q9UBP4 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC3.95□□□□□ -1.78
DKK3Q9UBP4 RNU6-989P-201ENST00000362756 107 ntBASIC3.95□□□□□ -1.78
DKK3Q9UBP4 RNA5SP97-201ENST00000365006 84 ntBASIC3.95□□□□□ -1.78
DKK3Q9UBP4 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC3.95□□□□□ -1.78
DKK3Q9UBP4 XGY1-201ENST00000381172 446 ntBASIC3.95□□□□□ -1.78
DKK3Q9UBP4 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
DKK3Q9UBP4 SNORA9-201ENST00000384215 133 ntBASIC3.95□□□□□ -1.78
DKK3Q9UBP4 Y_RNA.529-201ENST00000384586 119 ntBASIC3.95□□□□□ -1.78
DKK3Q9UBP4 AC005517.2-201ENST00000424673 553 ntBASIC3.95□□□□□ -1.78
DKK3Q9UBP4 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC3.95□□□□□ -1.78
DKK3Q9UBP4 ATP5JP1-201ENST00000431631 322 ntBASIC3.95□□□□□ -1.78
DKK3Q9UBP4 OR4K11P-201ENST00000431829 904 ntBASIC3.95□□□□□ -1.78
DKK3Q9UBP4 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC3.95□□□□□ -1.78
DKK3Q9UBP4 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC3.95□□□□□ -1.78
DKK3Q9UBP4 AL133547.1-201ENST00000448546 220 ntBASIC3.95□□□□□ -1.78
DKK3Q9UBP4 AC006480.1-201ENST00000449887 378 ntBASIC3.95□□□□□ -1.78
DKK3Q9UBP4 TAF8-207ENST00000482432 556 ntTSL 2 BASIC3.95□□□□□ -1.78
DKK3Q9UBP4 RPS3AP50-201ENST00000487064 803 ntBASIC3.95□□□□□ -1.78
DKK3Q9UBP4 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC3.95□□□□□ -1.78
DKK3Q9UBP4 SNORA74D-201ENST00000516404 141 ntBASIC3.95□□□□□ -1.78
DKK3Q9UBP4 RNU7-51P-201ENST00000516560 62 ntBASIC3.95□□□□□ -1.78
DKK3Q9UBP4 RN7SKP116-201ENST00000516902 319 ntBASIC3.95□□□□□ -1.78
DKK3Q9UBP4 RNU6-798P-201ENST00000516912 103 ntBASIC3.95□□□□□ -1.78
DKK3Q9UBP4 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC3.95□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 103.3 ms