Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AC091965.2-201ENST00000512324 613 ntBASIC3.07□□□□□ -1.92
CCDC3Q9BQI4 FAM60DP-201ENST00000524174 632 ntBASIC3.07□□□□□ -1.92
CCDC3Q9BQI4 AP002963.1-201ENST00000530590 184 ntBASIC3.07□□□□□ -1.92
CCDC3Q9BQI4 AC024909.2-201ENST00000553035 286 ntBASIC3.07□□□□□ -1.92
CCDC3Q9BQI4 LINC02461-201ENST00000553211 836 ntTSL 3 BASIC3.07□□□□□ -1.92
CCDC3Q9BQI4 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC3.07□□□□□ -1.92
CCDC3Q9BQI4 TIMM9-208ENST00000556007 746 ntTSL 3 BASIC3.07□□□□□ -1.92
CCDC3Q9BQI4 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC3.07□□□□□ -1.92
CCDC3Q9BQI4 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC3.07□□□□□ -1.92
CCDC3Q9BQI4 AL157394.1-201ENST00000562983 1224 ntBASIC3.07□□□□□ -1.92
CCDC3Q9BQI4 MIR4513-201ENST00000581077 86 ntBASIC3.07□□□□□ -1.92
CCDC3Q9BQI4 MIR3682-201ENST00000581338 84 ntBASIC3.07□□□□□ -1.92
CCDC3Q9BQI4 MIR548AB-201ENST00000584917 84 ntBASIC3.07□□□□□ -1.92
CCDC3Q9BQI4 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC3.07□□□□□ -1.92
CCDC3Q9BQI4 AC099566.1-211ENST00000595188 737 ntTSL 5 BASIC3.07□□□□□ -1.92
CCDC3Q9BQI4 AC064872.1-201ENST00000604823 1072 ntBASIC3.07□□□□□ -1.92
CCDC3Q9BQI4 AL451064.1-201ENST00000607718 471 ntBASIC3.07□□□□□ -1.92
CCDC3Q9BQI4 AC239868.4-201ENST00000608318 671 ntBASIC3.07□□□□□ -1.92
CCDC3Q9BQI4 AC109347.2-201ENST00000610220 349 ntBASIC3.07□□□□□ -1.92
CCDC3Q9BQI4 AC091304.9-201ENST00000612091 226 ntBASIC3.07□□□□□ -1.92
CCDC3Q9BQI4 uc_338.25-201ENST00000613756 156 ntBASIC3.07□□□□□ -1.92
CCDC3Q9BQI4 AP001506.1-201ENST00000615444 211 ntBASIC3.07□□□□□ -1.92
CCDC3Q9BQI4 AC099506.2-201ENST00000623074 221 ntBASIC3.07□□□□□ -1.92
CCDC3Q9BQI4 AC112204.3-201ENST00000623822 332 ntBASIC3.07□□□□□ -1.92
CCDC3Q9BQI4 SATB1-AS1-269ENST00000630766 591 ntTSL 5 BASIC3.07□□□□□ -1.92
CCDC3Q9BQI4 AC092104.1-201ENST00000497346 1441 ntBASIC3.07□□□□□ -1.92
CCDC3Q9BQI4 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.07□□□□□ -1.92
CCDC3Q9BQI4 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC3.07□□□□□ -1.92
CCDC3Q9BQI4 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
CCDC3Q9BQI4 RNU6-1284P-201ENST00000363701 100 ntBASIC3.06□□□□□ -1.92
CCDC3Q9BQI4 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC3.06□□□□□ -1.92
CCDC3Q9BQI4 AL591034.1-201ENST00000407447 340 ntBASIC3.06□□□□□ -1.92
CCDC3Q9BQI4 RPS3AP3-201ENST00000411933 242 ntBASIC3.06□□□□□ -1.92
CCDC3Q9BQI4 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC3.06□□□□□ -1.92
CCDC3Q9BQI4 RPS15AP6-201ENST00000420703 385 ntBASIC3.06□□□□□ -1.92
CCDC3Q9BQI4 AC006366.1-201ENST00000422002 759 ntBASIC3.06□□□□□ -1.92
CCDC3Q9BQI4 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC3.06□□□□□ -1.92
CCDC3Q9BQI4 AL356867.1-201ENST00000429623 299 ntBASIC3.06□□□□□ -1.92
CCDC3Q9BQI4 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC3.06□□□□□ -1.92
CCDC3Q9BQI4 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC3.06□□□□□ -1.92
CCDC3Q9BQI4 AL138830.1-201ENST00000435802 402 ntTSL 3 BASIC3.06□□□□□ -1.92
CCDC3Q9BQI4 GACAT1-202ENST00000441383 540 ntTSL 4 BASIC3.06□□□□□ -1.92
CCDC3Q9BQI4 AL360221.1-201ENST00000445989 335 ntBASIC3.06□□□□□ -1.92
CCDC3Q9BQI4 AC074327.1-201ENST00000448017 540 ntTSL 2 BASIC3.06□□□□□ -1.92
CCDC3Q9BQI4 MRPS31P2-201ENST00000451581 518 ntBASIC3.06□□□□□ -1.92
CCDC3Q9BQI4 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC3.06□□□□□ -1.92
CCDC3Q9BQI4 RNU6-956P-201ENST00000458868 103 ntBASIC3.06□□□□□ -1.92
CCDC3Q9BQI4 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC3.06□□□□□ -1.92
CCDC3Q9BQI4 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC3.06□□□□□ -1.92
CCDC3Q9BQI4 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC3.06□□□□□ -1.92
CCDC3Q9BQI4 BCLAF1P1-201ENST00000505813 2752 ntBASIC3.06□□□□□ -1.92
CCDC3Q9BQI4 ARL2BPP4-201ENST00000506854 471 ntBASIC3.06□□□□□ -1.92
CCDC3Q9BQI4 CBX3P3-201ENST00000508108 532 ntBASIC3.06□□□□□ -1.92
CCDC3Q9BQI4 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
CCDC3Q9BQI4 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC3.06□□□□□ -1.92
CCDC3Q9BQI4 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
CCDC3Q9BQI4 SCARNA15.2-201ENST00000516409 127 ntBASIC3.06□□□□□ -1.92
CCDC3Q9BQI4 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC3.06□□□□□ -1.92
CCDC3Q9BQI4 NDUFB9P3-201ENST00000521269 501 ntBASIC3.06□□□□□ -1.92
CCDC3Q9BQI4 AC107934.1-201ENST00000522215 217 ntBASIC3.06□□□□□ -1.92
CCDC3Q9BQI4 TAS2R14-202ENST00000537503 1858 ntAPPRIS P1 BASIC3.06□□□□□ -1.92
CCDC3Q9BQI4 AC011602.1-201ENST00000546484 331 ntBASIC3.06□□□□□ -1.92
CCDC3Q9BQI4 OR4H12P-201ENST00000556269 907 ntBASIC3.06□□□□□ -1.92
CCDC3Q9BQI4 H3F3AP1-201ENST00000559984 334 ntBASIC3.06□□□□□ -1.92
CCDC3Q9BQI4 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC3.06□□□□□ -1.92
CCDC3Q9BQI4 AC055876.1-202ENST00000567053 138 ntBASIC3.06□□□□□ -1.92
CCDC3Q9BQI4 MIR4474-201ENST00000579189 78 ntBASIC3.06□□□□□ -1.92
CCDC3Q9BQI4 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC3.06□□□□□ -1.92
CCDC3Q9BQI4 AC064807.4-201ENST00000607201 407 ntBASIC3.06□□□□□ -1.92
CCDC3Q9BQI4 AC131902.3-201ENST00000611767 581 ntBASIC3.06□□□□□ -1.92
CCDC3Q9BQI4 MIR7106-201ENST00000612419 65 ntBASIC3.06□□□□□ -1.92
CCDC3Q9BQI4 AC009509.4-201ENST00000619202 509 ntBASIC3.06□□□□□ -1.92
CCDC3Q9BQI4 AC008568.2-201ENST00000623862 2313 ntBASIC3.06□□□□□ -1.92
CCDC3Q9BQI4 AC091953.2-201ENST00000623979 160 ntBASIC3.06□□□□□ -1.92
CCDC3Q9BQI4 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
CCDC3Q9BQI4 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC3.06□□□□□ -1.92
CCDC3Q9BQI4 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
CCDC3Q9BQI4 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC3.06□□□□□ -1.92
CCDC3Q9BQI4 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC3.06□□□□□ -1.92
CCDC3Q9BQI4 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC3.05□□□□□ -1.92
CCDC3Q9BQI4 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
CCDC3Q9BQI4 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
CCDC3Q9BQI4 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC3.05□□□□□ -1.92
CCDC3Q9BQI4 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC3.05□□□□□ -1.92
CCDC3Q9BQI4 CDK1-202ENST00000373809 1613 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
CCDC3Q9BQI4 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC3.05□□□□□ -1.92
CCDC3Q9BQI4 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC3.05□□□□□ -1.92
CCDC3Q9BQI4 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC3.05□□□□□ -1.92
CCDC3Q9BQI4 RNU5A-1-201ENST00000362698 116 ntBASIC3.05□□□□□ -1.92
CCDC3Q9BQI4 TXNP7-201ENST00000406296 293 ntBASIC3.05□□□□□ -1.92
CCDC3Q9BQI4 MIR1289-1-201ENST00000408836 144 ntBASIC3.05□□□□□ -1.92
CCDC3Q9BQI4 AC000123.1-201ENST00000418215 516 ntTSL 5 BASIC3.05□□□□□ -1.92
CCDC3Q9BQI4 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC3.05□□□□□ -1.92
CCDC3Q9BQI4 AC018630.2-202ENST00000422992 927 ntBASIC3.05□□□□□ -1.92
CCDC3Q9BQI4 UBE2D3P2-201ENST00000424409 445 ntBASIC3.05□□□□□ -1.92
CCDC3Q9BQI4 HIGD1AP11-201ENST00000438361 280 ntBASIC3.05□□□□□ -1.92
CCDC3Q9BQI4 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC3.05□□□□□ -1.92
CCDC3Q9BQI4 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC3.05□□□□□ -1.92
CCDC3Q9BQI4 AC016751.1-201ENST00000458254 306 ntTSL 3 BASIC3.05□□□□□ -1.92
CCDC3Q9BQI4 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC3.05□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 101 ms