Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC3.99□□□□□ -1.77
CCDC140Q96MF4 FAM35BP-202ENST00000497389 3337 ntBASIC3.99□□□□□ -1.77
CCDC140Q96MF4 RGS4-202ENST00000367908 2606 ntTSL 2 BASIC3.99□□□□□ -1.77
CCDC140Q96MF4 R3HCC1L-202ENST00000314594 3198 ntAPPRIS P1 TSL 5 BASIC3.99□□□□□ -1.77
CCDC140Q96MF4 PLCXD3-201ENST00000328457 7538 ntAPPRIS P1 TSL 5 BASIC3.99□□□□□ -1.77
CCDC140Q96MF4 ANKRD30A-202ENST00000374660 4762 ntAPPRIS ALT2 TSL 5 BASIC3.99□□□□□ -1.77
CCDC140Q96MF4 LINC02389-201ENST00000535058 3546 ntTSL 2 BASIC3.99□□□□□ -1.77
CCDC140Q96MF4 MYBPC1-205ENST00000536007 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC3.99□□□□□ -1.77
CCDC140Q96MF4 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC3.99□□□□□ -1.77
CCDC140Q96MF4 MAPK10-328ENST00000641553 4009 ntBASIC3.98□□□□□ -1.77
CCDC140Q96MF4 PSG1-201ENST00000244296 2276 ntAPPRIS P3 TSL 1 (best) BASIC3.98□□□□□ -1.77
CCDC140Q96MF4 FNIP1-202ENST00000307968 6388 ntAPPRIS ALT2 TSL 5 BASIC3.98□□□□□ -1.77
CCDC140Q96MF4 PTPRO-204ENST00000445537 4062 ntAPPRIS ALT2 TSL 2 BASIC3.98□□□□□ -1.77
CCDC140Q96MF4 OR56A4-202ENST00000641156 3768 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
CCDC140Q96MF4 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC3.98□□□□□ -1.77
CCDC140Q96MF4 MYO3A-203ENST00000376302 2723 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
CCDC140Q96MF4 FAM197Y7-202ENST00000433321 2325 ntTSL 2 BASIC3.98□□□□□ -1.77
CCDC140Q96MF4 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
CCDC140Q96MF4 RNU1-108P-201ENST00000362556 161 ntBASIC3.98□□□□□ -1.77
CCDC140Q96MF4 Y_RNA.123-201ENST00000363338 102 ntBASIC3.98□□□□□ -1.77
CCDC140Q96MF4 Z98749.2-208ENST00000381646 500 ntBASIC3.98□□□□□ -1.77
CCDC140Q96MF4 RNU6-171P-201ENST00000384354 107 ntBASIC3.98□□□□□ -1.77
CCDC140Q96MF4 MIR105-2-201ENST00000385083 81 ntBASIC3.98□□□□□ -1.77
CCDC140Q96MF4 RNU6-700P-201ENST00000391043 107 ntBASIC3.98□□□□□ -1.77
CCDC140Q96MF4 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC3.98□□□□□ -1.77
CCDC140Q96MF4 U3.37-201ENST00000408528 213 ntBASIC3.98□□□□□ -1.77
CCDC140Q96MF4 RN7SKP16-201ENST00000410180 299 ntBASIC3.98□□□□□ -1.77
CCDC140Q96MF4 AL354726.1-201ENST00000411981 402 ntTSL 2 BASIC3.98□□□□□ -1.77
CCDC140Q96MF4 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC3.98□□□□□ -1.77
CCDC140Q96MF4 TRAPPC2P4-201ENST00000421750 331 ntBASIC3.98□□□□□ -1.77
CCDC140Q96MF4 RPL23AP49-201ENST00000492925 468 ntBASIC3.98□□□□□ -1.77
CCDC140Q96MF4 RPL22P13-201ENST00000493291 347 ntBASIC3.98□□□□□ -1.77
CCDC140Q96MF4 AC072052.1-201ENST00000496556 306 ntBASIC3.98□□□□□ -1.77
CCDC140Q96MF4 AC083829.1-201ENST00000503756 657 ntBASIC3.98□□□□□ -1.77
CCDC140Q96MF4 SLC25A15P5-201ENST00000508033 253 ntBASIC3.98□□□□□ -1.77
CCDC140Q96MF4 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC3.98□□□□□ -1.77
CCDC140Q96MF4 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC3.98□□□□□ -1.77
CCDC140Q96MF4 RNA5SP230-201ENST00000517039 122 ntBASIC3.98□□□□□ -1.77
CCDC140Q96MF4 AC144568.1-201ENST00000520139 137 ntBASIC3.98□□□□□ -1.77
CCDC140Q96MF4 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC3.98□□□□□ -1.77
CCDC140Q96MF4 LINC01580-201ENST00000555255 561 ntTSL 4 BASIC3.98□□□□□ -1.77
CCDC140Q96MF4 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC3.98□□□□□ -1.77
CCDC140Q96MF4 MIR5696-201ENST00000578474 85 ntBASIC3.98□□□□□ -1.77
CCDC140Q96MF4 AC005702.2-201ENST00000591035 481 ntAPPRIS P1 TSL 3 BASIC3.98□□□□□ -1.77
CCDC140Q96MF4 OR7E18P-201ENST00000592589 702 ntBASIC3.98□□□□□ -1.77
CCDC140Q96MF4 AC008962.1-201ENST00000605729 304 ntBASIC3.98□□□□□ -1.77
CCDC140Q96MF4 AC211433.2-201ENST00000608433 387 ntBASIC3.98□□□□□ -1.77
CCDC140Q96MF4 AC005046.1-201ENST00000608515 625 ntBASIC3.98□□□□□ -1.77
CCDC140Q96MF4 AC020634.1-201ENST00000608701 549 ntBASIC3.98□□□□□ -1.77
CCDC140Q96MF4 AC138305.3-201ENST00000624988 240 ntBASIC3.98□□□□□ -1.77
CCDC140Q96MF4 LINC01232-203ENST00000625369 576 ntTSL 4 BASIC3.98□□□□□ -1.77
CCDC140Q96MF4 SCARNA4-202ENST00000625402 129 ntBASIC3.98□□□□□ -1.77
CCDC140Q96MF4 NAA50-211ENST00000630058 177 ntTSL 5 BASIC3.98□□□□□ -1.77
CCDC140Q96MF4 DAOA-212ENST00000640578 378 ntAPPRIS ALT2 TSL 5 BASIC3.98□□□□□ -1.77
CCDC140Q96MF4 OR2T7-202ENST00000641557 3409 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
CCDC140Q96MF4 MOXD1-201ENST00000336749 2950 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
CCDC140Q96MF4 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC3.98□□□□□ -1.77
CCDC140Q96MF4 LANCL1-204ENST00000441020 4503 ntAPPRIS P1 TSL 5 BASIC3.98□□□□□ -1.77
CCDC140Q96MF4 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC3.97□□□□□ -1.77
CCDC140Q96MF4 ATRX-201ENST00000373344 11220 ntAPPRIS P4 TSL 1 (best) BASIC3.97□□□□□ -1.77
CCDC140Q96MF4 FTX-210ENST00000603037 8347 ntTSL 5 BASIC3.97□□□□□ -1.77
CCDC140Q96MF4 LRP1B-201ENST00000389484 16535 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
CCDC140Q96MF4 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
CCDC140Q96MF4 RNMT-202ENST00000383314 6250 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
CCDC140Q96MF4 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC3.97□□□□□ -1.77
CCDC140Q96MF4 UACA-211ENST00000560441 4723 ntAPPRIS ALT2 TSL 5 BASIC3.97□□□□□ -1.77
CCDC140Q96MF4 CHM-201ENST00000357749 5442 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
CCDC140Q96MF4 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
CCDC140Q96MF4 PIGN-241ENST00000640050 3154 ntAPPRIS P1 TSL 5 BASIC3.97□□□□□ -1.77
CCDC140Q96MF4 AP000808.1-201ENST00000512200 3252 ntTSL 2 BASIC3.97□□□□□ -1.77
CCDC140Q96MF4 RNF182-207ENST00000537663 3382 ntAPPRIS P1 TSL 4 BASIC3.97□□□□□ -1.77
CCDC140Q96MF4 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
CCDC140Q96MF4 SNORD50.1-201ENST00000362987 71 ntBASIC3.97□□□□□ -1.77
CCDC140Q96MF4 RNU6-595P-201ENST00000363944 107 ntBASIC3.97□□□□□ -1.77
CCDC140Q96MF4 Y_RNA.210-201ENST00000364161 110 ntBASIC3.97□□□□□ -1.77
CCDC140Q96MF4 RNU1-73P-201ENST00000383971 164 ntBASIC3.97□□□□□ -1.77
CCDC140Q96MF4 Y_RNA.512-201ENST00000384518 102 ntBASIC3.97□□□□□ -1.77
CCDC140Q96MF4 U3.32-201ENST00000408116 212 ntBASIC3.97□□□□□ -1.77
CCDC140Q96MF4 RNA5SP494-201ENST00000410653 129 ntBASIC3.97□□□□□ -1.77
CCDC140Q96MF4 Z86062.2-201ENST00000411442 380 ntTSL 5 BASIC3.97□□□□□ -1.77
CCDC140Q96MF4 AC007098.1-201ENST00000420122 367 ntBASIC3.97□□□□□ -1.77
CCDC140Q96MF4 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC3.97□□□□□ -1.77
CCDC140Q96MF4 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC3.97□□□□□ -1.77
CCDC140Q96MF4 RPL21P91-201ENST00000429231 479 ntBASIC3.97□□□□□ -1.77
CCDC140Q96MF4 RPS3AP12-201ENST00000443616 753 ntBASIC3.97□□□□□ -1.77
CCDC140Q96MF4 HMGB3P8-201ENST00000449709 577 ntBASIC3.97□□□□□ -1.77
CCDC140Q96MF4 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC3.97□□□□□ -1.77
CCDC140Q96MF4 RN7SL172P-201ENST00000460535 303 ntBASIC3.97□□□□□ -1.77
CCDC140Q96MF4 RPL21P104-201ENST00000464143 478 ntBASIC3.97□□□□□ -1.77
CCDC140Q96MF4 AC121764.3-201ENST00000465946 384 ntTSL 2 BASIC3.97□□□□□ -1.77
CCDC140Q96MF4 RN7SL222P-201ENST00000476452 299 ntBASIC3.97□□□□□ -1.77
CCDC140Q96MF4 RPS4XP13-201ENST00000483219 789 ntBASIC3.97□□□□□ -1.77
CCDC140Q96MF4 HIGD1AP14-201ENST00000507617 282 ntBASIC3.97□□□□□ -1.77
CCDC140Q96MF4 NDUFB4P9-201ENST00000511646 388 ntBASIC3.97□□□□□ -1.77
CCDC140Q96MF4 AC131281.1-201ENST00000522984 164 ntBASIC3.97□□□□□ -1.77
CCDC140Q96MF4 AC090281.1-201ENST00000523019 276 ntBASIC3.97□□□□□ -1.77
CCDC140Q96MF4 IGKV2D-19-201ENST00000523346 262 ntBASIC3.97□□□□□ -1.77
CCDC140Q96MF4 AC040926.1-201ENST00000530195 238 ntBASIC3.97□□□□□ -1.77
CCDC140Q96MF4 EDDM3DP-201ENST00000554692 434 ntBASIC3.97□□□□□ -1.77
CCDC140Q96MF4 AC006349.1-201ENST00000555526 235 ntBASIC3.97□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 127.9 ms