Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
UBE3DQ7Z6J8 RNU6-611P-201ENST00000384276 104 ntBASIC4.57□□□□□ -1.68
UBE3DQ7Z6J8 SNORA51.11-201ENST00000384442 131 ntBASIC4.57□□□□□ -1.68
UBE3DQ7Z6J8 RNU6-1093P-201ENST00000391194 107 ntBASIC4.57□□□□□ -1.68
UBE3DQ7Z6J8 RNU2-38P-201ENST00000410856 79 ntBASIC4.57□□□□□ -1.68
UBE3DQ7Z6J8 COX6B1P1-201ENST00000415962 213 ntBASIC4.57□□□□□ -1.68
UBE3DQ7Z6J8 AL096701.2-201ENST00000416920 238 ntBASIC4.57□□□□□ -1.68
UBE3DQ7Z6J8 CKS1BP5-201ENST00000434172 273 ntBASIC4.57□□□□□ -1.68
UBE3DQ7Z6J8 AC073587.1-201ENST00000447093 876 ntBASIC4.57□□□□□ -1.68
UBE3DQ7Z6J8 AC133134.1-201ENST00000466800 359 ntBASIC4.57□□□□□ -1.68
UBE3DQ7Z6J8 CREM-230ENST00000474931 626 ntTSL 2 BASIC4.57□□□□□ -1.68
UBE3DQ7Z6J8 AC113167.1-201ENST00000512941 570 ntTSL 4 BASIC4.57□□□□□ -1.68
UBE3DQ7Z6J8 AC109329.1-201ENST00000518744 317 ntBASIC4.57□□□□□ -1.68
UBE3DQ7Z6J8 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC4.57□□□□□ -1.68
UBE3DQ7Z6J8 AL359237.1-202ENST00000556168 487 ntTSL 5 BASIC4.57□□□□□ -1.68
UBE3DQ7Z6J8 AC134312.3-201ENST00000566155 213 ntTSL 2 BASIC4.57□□□□□ -1.68
UBE3DQ7Z6J8 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC4.57□□□□□ -1.68
UBE3DQ7Z6J8 MIR5699-201ENST00000578903 90 ntBASIC4.57□□□□□ -1.68
UBE3DQ7Z6J8 AL121917.1-203ENST00000605534 577 ntBASIC4.57□□□□□ -1.68
UBE3DQ7Z6J8 AC096772.1-201ENST00000609146 564 ntBASIC4.57□□□□□ -1.68
UBE3DQ7Z6J8 LINC00923-207ENST00000619015 505 ntTSL 5 BASIC4.57□□□□□ -1.68
UBE3DQ7Z6J8 AL353748.2-201ENST00000622148 471 ntBASIC4.57□□□□□ -1.68
UBE3DQ7Z6J8 CASP1-217ENST00000640184 327 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
UBE3DQ7Z6J8 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
UBE3DQ7Z6J8 PCDH15-212ENST00000395442 2970 ntTSL 5 BASIC4.57□□□□□ -1.68
UBE3DQ7Z6J8 ROS1-201ENST00000368507 7417 ntAPPRIS ALT2 TSL 5 BASIC4.57□□□□□ -1.68
UBE3DQ7Z6J8 NBPF14-206ENST00000614999 10080 ntTSL 5 BASIC4.57□□□□□ -1.68
UBE3DQ7Z6J8 ZNF382-204ENST00000439428 2742 ntAPPRIS ALT2 TSL 1 (best) BASIC4.57□□□□□ -1.68
UBE3DQ7Z6J8 RPL34-AS1-202ENST00000507248 3713 ntTSL 2 BASIC4.57□□□□□ -1.68
UBE3DQ7Z6J8 CNTRL-205ENST00000373850 5824 ntTSL 2 BASIC4.57□□□□□ -1.68
UBE3DQ7Z6J8 ZNF285-205ENST00000614994 6012 ntAPPRIS P3 TSL 1 (best) BASIC4.56□□□□□ -1.68
UBE3DQ7Z6J8 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
UBE3DQ7Z6J8 WDR63-203ENST00000370596 2905 ntAPPRIS ALT2 TSL 5 BASIC4.56□□□□□ -1.68
UBE3DQ7Z6J8 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC4.56□□□□□ -1.68
UBE3DQ7Z6J8 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC4.56□□□□□ -1.68
UBE3DQ7Z6J8 NKRF-202ENST00000371527 3741 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
UBE3DQ7Z6J8 HGF-201ENST00000222390 5989 ntAPPRIS P3 TSL 1 (best) BASIC4.56□□□□□ -1.68
UBE3DQ7Z6J8 AC009812.4-201ENST00000569134 1805 ntBASIC4.56□□□□□ -1.68
UBE3DQ7Z6J8 KIF3A-203ENST00000403231 2181 ntTSL 2 BASIC4.56□□□□□ -1.68
UBE3DQ7Z6J8 Y_RNA.19-201ENST00000362462 99 ntBASIC4.56□□□□□ -1.68
UBE3DQ7Z6J8 Y_RNA.785-201ENST00000384290 109 ntBASIC4.56□□□□□ -1.68
UBE3DQ7Z6J8 MIR628-201ENST00000385229 95 ntBASIC4.56□□□□□ -1.68
UBE3DQ7Z6J8 MIR548H3-201ENST00000408771 118 ntBASIC4.56□□□□□ -1.68
UBE3DQ7Z6J8 AC114755.2-201ENST00000413520 361 ntBASIC4.56□□□□□ -1.68
UBE3DQ7Z6J8 HSPD1P21-201ENST00000436541 245 ntBASIC4.56□□□□□ -1.68
UBE3DQ7Z6J8 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC4.56□□□□□ -1.68
UBE3DQ7Z6J8 AP000770.1-201ENST00000444123 583 ntTSL 5 BASIC4.56□□□□□ -1.68
UBE3DQ7Z6J8 AL590664.1-201ENST00000448065 339 ntBASIC4.56□□□□□ -1.68
UBE3DQ7Z6J8 AC009963.2-201ENST00000453431 138 ntBASIC4.56□□□□□ -1.68
UBE3DQ7Z6J8 AC093909.2-201ENST00000505178 437 ntTSL 3 BASIC4.56□□□□□ -1.68
UBE3DQ7Z6J8 HMGN1P11-201ENST00000508668 303 ntBASIC4.56□□□□□ -1.68
UBE3DQ7Z6J8 AC025465.3-201ENST00000510570 311 ntBASIC4.56□□□□□ -1.68
UBE3DQ7Z6J8 AC091144.1-201ENST00000519573 138 ntBASIC4.56□□□□□ -1.68
UBE3DQ7Z6J8 AC034114.1-201ENST00000520293 285 ntBASIC4.56□□□□□ -1.68
UBE3DQ7Z6J8 AC009446.1-202ENST00000521131 473 ntTSL 3 BASIC4.56□□□□□ -1.68
UBE3DQ7Z6J8 AC008489.1-201ENST00000524271 483 ntBASIC4.56□□□□□ -1.68
UBE3DQ7Z6J8 SAMD15-202ENST00000533095 412 ntTSL 5 BASIC4.56□□□□□ -1.68
UBE3DQ7Z6J8 AL157871.3-201ENST00000557231 293 ntBASIC4.56□□□□□ -1.68
UBE3DQ7Z6J8 AC090517.1-201ENST00000569307 266 ntBASIC4.56□□□□□ -1.68
UBE3DQ7Z6J8 AC005951.2-201ENST00000576282 495 ntBASIC4.56□□□□□ -1.68
UBE3DQ7Z6J8 MIR5701-3-201ENST00000578890 82 ntBASIC4.56□□□□□ -1.68
UBE3DQ7Z6J8 MIR5701-1-201ENST00000585138 82 ntBASIC4.56□□□□□ -1.68
UBE3DQ7Z6J8 AL109935.2-201ENST00000587737 395 ntTSL 5 BASIC4.56□□□□□ -1.68
UBE3DQ7Z6J8 MIR5701-2-201ENST00000615634 82 ntBASIC4.56□□□□□ -1.68
UBE3DQ7Z6J8 AC243829.7-201ENST00000633081 225 ntBASIC4.56□□□□□ -1.68
UBE3DQ7Z6J8 AL512643.1-201ENST00000635735 524 ntBASIC4.56□□□□□ -1.68
UBE3DQ7Z6J8 OR10Z1-202ENST00000641002 6323 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
UBE3DQ7Z6J8 CFAP47-203ENST00000378653 9943 ntAPPRIS P2 TSL 5 BASIC4.56□□□□□ -1.68
UBE3DQ7Z6J8 TDRD3-204ENST00000377894 2484 ntTSL 2 BASIC4.56□□□□□ -1.68
UBE3DQ7Z6J8 LINC01689-201ENST00000416218 2007 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
UBE3DQ7Z6J8 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
UBE3DQ7Z6J8 ZEB1-202ENST00000361642 5990 ntAPPRIS ALT2 TSL 1 (best) BASIC4.56□□□□□ -1.68
UBE3DQ7Z6J8 DGKH-206ENST00000536612 3957 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
UBE3DQ7Z6J8 MAPK10-236ENST00000638313 3971 ntTSL 5 BASIC4.56□□□□□ -1.68
UBE3DQ7Z6J8 ADAM18-201ENST00000265707 2388 ntAPPRIS P3 TSL 1 (best) BASIC4.56□□□□□ -1.68
UBE3DQ7Z6J8 CLVS1-201ENST00000325897 3486 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
UBE3DQ7Z6J8 DHX9P1-201ENST00000436565 3076 ntBASIC4.56□□□□□ -1.68
UBE3DQ7Z6J8 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
UBE3DQ7Z6J8 CNGA1-209ENST00000544810 2722 ntAPPRIS ALT2 TSL 5 BASIC4.55□□□□□ -1.68
UBE3DQ7Z6J8 ZBTB38-220ENST00000514251 7683 ntAPPRIS P1 TSL 2 BASIC4.55□□□□□ -1.68
UBE3DQ7Z6J8 ANKRD34C-201ENST00000421388 4951 ntAPPRIS P1 BASIC4.55□□□□□ -1.68
UBE3DQ7Z6J8 AL450326.2-201ENST00000421913 1962 ntBASIC4.55□□□□□ -1.68
UBE3DQ7Z6J8 FILIP1-201ENST00000237172 4580 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
UBE3DQ7Z6J8 RNU6-200P-201ENST00000364743 107 ntBASIC4.55□□□□□ -1.68
UBE3DQ7Z6J8 WFDC6-202ENST00000372670 620 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
UBE3DQ7Z6J8 BANF2-202ENST00000377805 444 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
UBE3DQ7Z6J8 RNU6-1179P-201ENST00000384667 107 ntBASIC4.55□□□□□ -1.68
UBE3DQ7Z6J8 MIR153-1-201ENST00000384914 90 ntBASIC4.55□□□□□ -1.68
UBE3DQ7Z6J8 TRAV23DV6-201ENST00000390451 409 ntAPPRIS P1 BASIC4.55□□□□□ -1.68
UBE3DQ7Z6J8 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC4.55□□□□□ -1.68
UBE3DQ7Z6J8 AL645733.1-201ENST00000402250 217 ntBASIC4.55□□□□□ -1.68
UBE3DQ7Z6J8 AL451107.1-201ENST00000416310 408 ntTSL 2 BASIC4.55□□□□□ -1.68
UBE3DQ7Z6J8 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
UBE3DQ7Z6J8 AL590762.4-201ENST00000425885 253 ntBASIC4.55□□□□□ -1.68
UBE3DQ7Z6J8 AL451062.2-201ENST00000427515 271 ntBASIC4.55□□□□□ -1.68
UBE3DQ7Z6J8 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC4.55□□□□□ -1.68
UBE3DQ7Z6J8 AC004938.1-201ENST00000438468 308 ntBASIC4.55□□□□□ -1.68
UBE3DQ7Z6J8 RPL26P6-201ENST00000440913 438 ntBASIC4.55□□□□□ -1.68
UBE3DQ7Z6J8 U8.21-201ENST00000459536 136 ntBASIC4.55□□□□□ -1.68
UBE3DQ7Z6J8 APOA2-207ENST00000470459 416 ntTSL 5 BASIC4.55□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 210.7 ms