Protein–RNA interactions for Protein: Q70EK8

USP53, Inactive ubiquitin carboxyl-terminal hydrolase 53, humanhuman

Predictions only

Length 1,073 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP53Q70EK8 AC090096.1-201ENST00000489168 390 ntBASIC4.38□□□□□ -1.71
USP53Q70EK8 AL049874.1-201ENST00000489560 388 ntBASIC4.38□□□□□ -1.71
USP53Q70EK8 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC4.38□□□□□ -1.71
USP53Q70EK8 MRPL49P2-201ENST00000521066 465 ntBASIC4.38□□□□□ -1.71
USP53Q70EK8 RNU6-323P-201ENST00000521915 107 ntBASIC4.38□□□□□ -1.71
USP53Q70EK8 SNRPGP16-201ENST00000533275 226 ntBASIC4.38□□□□□ -1.71
USP53Q70EK8 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC4.38□□□□□ -1.71
USP53Q70EK8 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC4.38□□□□□ -1.71
USP53Q70EK8 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC4.38□□□□□ -1.71
USP53Q70EK8 AC015912.2-201ENST00000571053 181 ntBASIC4.38□□□□□ -1.71
USP53Q70EK8 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC4.38□□□□□ -1.71
USP53Q70EK8 MIR5692A1-201ENST00000580523 69 ntBASIC4.38□□□□□ -1.71
USP53Q70EK8 AC010378.1-201ENST00000619270 362 ntBASIC4.38□□□□□ -1.71
USP53Q70EK8 MIR548A1HG-201ENST00000636739 558 ntTSL 4 BASIC4.38□□□□□ -1.71
USP53Q70EK8 MAPK10-320ENST00000641462 6696 ntBASIC4.38□□□□□ -1.71
USP53Q70EK8 AGBL2-201ENST00000357610 3295 ntAPPRIS ALT2 TSL 5 BASIC4.38□□□□□ -1.71
USP53Q70EK8 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
USP53Q70EK8 OR2L13-201ENST00000358120 1942 ntAPPRIS P1 BASIC4.38□□□□□ -1.71
USP53Q70EK8 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC4.38□□□□□ -1.71
USP53Q70EK8 CCNT2-201ENST00000264157 6917 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
USP53Q70EK8 ADAM29-214ENST00000618444 2949 ntAPPRIS P1 TSL 4 BASIC4.38□□□□□ -1.71
USP53Q70EK8 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
USP53Q70EK8 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
USP53Q70EK8 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
USP53Q70EK8 OR4G2P-202ENST00000641004 1759 ntBASIC4.37□□□□□ -1.71
USP53Q70EK8 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC4.37□□□□□ -1.71
USP53Q70EK8 ZNF808-201ENST00000359798 3600 ntAPPRIS P1 TSL 5 BASIC4.37□□□□□ -1.71
USP53Q70EK8 AC079062.1-203ENST00000581862 3610 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
USP53Q70EK8 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
USP53Q70EK8 Y_RNA.202-201ENST00000364083 110 ntBASIC4.37□□□□□ -1.71
USP53Q70EK8 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
USP53Q70EK8 TCEAL7-202ENST00000372666 852 ntAPPRIS P1 TSL 2 BASIC4.37□□□□□ -1.71
USP53Q70EK8 Y_RNA.445-201ENST00000384168 102 ntBASIC4.37□□□□□ -1.71
USP53Q70EK8 Y_RNA.480-201ENST00000384364 102 ntBASIC4.37□□□□□ -1.71
USP53Q70EK8 SNORA75.4-201ENST00000391278 119 ntBASIC4.37□□□□□ -1.71
USP53Q70EK8 AL391417.1-201ENST00000404100 426 ntBASIC4.37□□□□□ -1.71
USP53Q70EK8 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC4.37□□□□□ -1.71
USP53Q70EK8 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC4.37□□□□□ -1.71
USP53Q70EK8 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC4.37□□□□□ -1.71
USP53Q70EK8 RPL7P37-201ENST00000425095 738 ntBASIC4.37□□□□□ -1.71
USP53Q70EK8 AC073063.1-201ENST00000434352 607 ntBASIC4.37□□□□□ -1.71
USP53Q70EK8 RPL7P28-201ENST00000437739 740 ntBASIC4.37□□□□□ -1.71
USP53Q70EK8 LAMTOR5P1-201ENST00000444290 270 ntBASIC4.37□□□□□ -1.71
USP53Q70EK8 LINC01210-201ENST00000465283 625 ntTSL 2 BASIC4.37□□□□□ -1.71
USP53Q70EK8 AC104472.2-201ENST00000469035 601 ntBASIC4.37□□□□□ -1.71
USP53Q70EK8 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC4.37□□□□□ -1.71
USP53Q70EK8 RN7SL810P-201ENST00000493031 276 ntBASIC4.37□□□□□ -1.71
USP53Q70EK8 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC4.37□□□□□ -1.71
USP53Q70EK8 RNU6-1332P-201ENST00000516666 104 ntBASIC4.37□□□□□ -1.71
USP53Q70EK8 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC4.37□□□□□ -1.71
USP53Q70EK8 AP000827.1-201ENST00000527814 258 ntBASIC4.37□□□□□ -1.71
USP53Q70EK8 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC4.37□□□□□ -1.71
USP53Q70EK8 AC034105.4-201ENST00000568304 277 ntBASIC4.37□□□□□ -1.71
USP53Q70EK8 DSCR9-205ENST00000585273 751 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
USP53Q70EK8 AC006504.6-201ENST00000590142 199 ntBASIC4.37□□□□□ -1.71
USP53Q70EK8 AC073539.2-201ENST00000597113 165 ntBASIC4.37□□□□□ -1.71
USP53Q70EK8 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC4.37□□□□□ -1.71
USP53Q70EK8 AC020634.1-201ENST00000608701 549 ntBASIC4.37□□□□□ -1.71
USP53Q70EK8 AC244517.12-201ENST00000623581 663 ntBASIC4.37□□□□□ -1.71
USP53Q70EK8 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
USP53Q70EK8 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
USP53Q70EK8 LIMA1-214ENST00000552783 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC4.37□□□□□ -1.71
USP53Q70EK8 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
USP53Q70EK8 ZNF285B-201ENST00000561698 1767 ntBASIC4.37□□□□□ -1.71
USP53Q70EK8 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
USP53Q70EK8 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC4.37□□□□□ -1.71
USP53Q70EK8 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC4.37□□□□□ -1.71
USP53Q70EK8 AC074029.4-201ENST00000624796 1859 ntBASIC4.37□□□□□ -1.71
USP53Q70EK8 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
USP53Q70EK8 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC4.37□□□□□ -1.71
USP53Q70EK8 CENPE-202ENST00000380026 8241 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
USP53Q70EK8 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC4.36□□□□□ -1.71
USP53Q70EK8 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC4.36□□□□□ -1.71
USP53Q70EK8 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC4.36□□□□□ -1.71
USP53Q70EK8 OBSCN-204ENST00000366707 26772 ntAPPRIS P1 TSL 5 BASIC4.36□□□□□ -1.71
USP53Q70EK8 UBE2L2-201ENST00000254302 429 ntBASIC4.36□□□□□ -1.71
USP53Q70EK8 MUCL1-201ENST00000308796 470 ntAPPRIS P2 TSL 1 (best) BASIC4.36□□□□□ -1.71
USP53Q70EK8 Y_RNA.216-201ENST00000364205 93 ntBASIC4.36□□□□□ -1.71
USP53Q70EK8 RNU6-266P-201ENST00000364225 107 ntBASIC4.36□□□□□ -1.71
USP53Q70EK8 Y_RNA.422-201ENST00000384054 114 ntBASIC4.36□□□□□ -1.71
USP53Q70EK8 MIR606-201ENST00000384851 96 ntBASIC4.36□□□□□ -1.71
USP53Q70EK8 SDHCP2-201ENST00000398565 501 ntBASIC4.36□□□□□ -1.71
USP53Q70EK8 MIR921-201ENST00000401133 56 ntBASIC4.36□□□□□ -1.71
USP53Q70EK8 RPL21P90-201ENST00000415692 466 ntBASIC4.36□□□□□ -1.71
USP53Q70EK8 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
USP53Q70EK8 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC4.36□□□□□ -1.71
USP53Q70EK8 AL451062.2-201ENST00000427515 271 ntBASIC4.36□□□□□ -1.71
USP53Q70EK8 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC4.36□□□□□ -1.71
USP53Q70EK8 HSPD1P21-201ENST00000436541 245 ntBASIC4.36□□□□□ -1.71
USP53Q70EK8 TXNP1-201ENST00000441872 371 ntBASIC4.36□□□□□ -1.71
USP53Q70EK8 AL359672.1-201ENST00000442302 409 ntBASIC4.36□□□□□ -1.71
USP53Q70EK8 HSFY6P-201ENST00000445573 403 ntBASIC4.36□□□□□ -1.71
USP53Q70EK8 PHBP16-201ENST00000446318 950 ntBASIC4.36□□□□□ -1.71
USP53Q70EK8 AL360271.2-201ENST00000447710 161 ntBASIC4.36□□□□□ -1.71
USP53Q70EK8 GSTA9P-202ENST00000448991 521 ntTSL 3 BASIC4.36□□□□□ -1.71
USP53Q70EK8 MRPS31P2-201ENST00000451581 518 ntBASIC4.36□□□□□ -1.71
USP53Q70EK8 AL163540.1-201ENST00000485382 386 ntBASIC4.36□□□□□ -1.71
USP53Q70EK8 AC091167.1-201ENST00000492017 396 ntBASIC4.36□□□□□ -1.71
USP53Q70EK8 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC4.36□□□□□ -1.71
USP53Q70EK8 MTCYBP40-201ENST00000509390 1135 ntBASIC4.36□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 174.2 ms