Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC2.72□□□□□ -1.97
FOXA2Q9Y261 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC2.72□□□□□ -1.97
FOXA2Q9Y261 AKIRIN1P1-201ENST00000547384 544 ntBASIC2.72□□□□□ -1.97
FOXA2Q9Y261 AL359212.1-201ENST00000556608 614 ntBASIC2.72□□□□□ -1.97
FOXA2Q9Y261 AC106796.1-201ENST00000577173 615 ntTSL 3 BASIC2.72□□□□□ -1.97
FOXA2Q9Y261 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC2.72□□□□□ -1.97
FOXA2Q9Y261 AC083760.1-201ENST00000589621 670 ntBASIC2.72□□□□□ -1.97
FOXA2Q9Y261 Z99289.3-201ENST00000605586 594 ntBASIC2.72□□□□□ -1.97
FOXA2Q9Y261 AC019176.2-201ENST00000611579 315 ntBASIC2.72□□□□□ -1.97
FOXA2Q9Y261 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC2.72□□□□□ -1.97
FOXA2Q9Y261 SNORD39.4-201ENST00000620099 78 ntBASIC2.72□□□□□ -1.97
FOXA2Q9Y261 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC2.72□□□□□ -1.97
FOXA2Q9Y261 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC2.72□□□□□ -1.97
FOXA2Q9Y261 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC2.72□□□□□ -1.97
FOXA2Q9Y261 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC2.72□□□□□ -1.97
FOXA2Q9Y261 ZNF117-203ENST00000610793 1374 ntTSL 2 BASIC2.72□□□□□ -1.97
FOXA2Q9Y261 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC2.72□□□□□ -1.97
FOXA2Q9Y261 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
FOXA2Q9Y261 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC2.71□□□□□ -1.98
FOXA2Q9Y261 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC2.71□□□□□ -1.98
FOXA2Q9Y261 U3.11-201ENST00000364476 212 ntBASIC2.71□□□□□ -1.98
FOXA2Q9Y261 RNU5E-5P-201ENST00000365379 116 ntBASIC2.71□□□□□ -1.98
FOXA2Q9Y261 AL031577.2-201ENST00000404133 280 ntBASIC2.71□□□□□ -1.98
FOXA2Q9Y261 AL139397.2-201ENST00000404529 772 ntBASIC2.71□□□□□ -1.98
FOXA2Q9Y261 Y_RNA.608-201ENST00000410647 95 ntBASIC2.71□□□□□ -1.98
FOXA2Q9Y261 RNU2-49P-201ENST00000410666 184 ntBASIC2.71□□□□□ -1.98
FOXA2Q9Y261 RNU4-72P-201ENST00000410754 173 ntBASIC2.71□□□□□ -1.98
FOXA2Q9Y261 NDUFS5P4-201ENST00000412983 318 ntBASIC2.71□□□□□ -1.98
FOXA2Q9Y261 AL365203.2-201ENST00000423444 196 ntBASIC2.71□□□□□ -1.98
FOXA2Q9Y261 AC098614.2-201ENST00000426040 255 ntBASIC2.71□□□□□ -1.98
FOXA2Q9Y261 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC2.71□□□□□ -1.98
FOXA2Q9Y261 AC005300.1-201ENST00000428401 373 ntBASIC2.71□□□□□ -1.98
FOXA2Q9Y261 AC104332.2-201ENST00000429959 156 ntBASIC2.71□□□□□ -1.98
FOXA2Q9Y261 ATP5JP1-201ENST00000431631 322 ntBASIC2.71□□□□□ -1.98
FOXA2Q9Y261 AC119618.1-201ENST00000434191 222 ntBASIC2.71□□□□□ -1.98
FOXA2Q9Y261 RPL23AP22-201ENST00000437556 453 ntBASIC2.71□□□□□ -1.98
FOXA2Q9Y261 Z99127.3-201ENST00000448158 395 ntBASIC2.71□□□□□ -1.98
FOXA2Q9Y261 EPS15P1-201ENST00000448836 336 ntBASIC2.71□□□□□ -1.98
FOXA2Q9Y261 AC125238.1-201ENST00000448842 249 ntBASIC2.71□□□□□ -1.98
FOXA2Q9Y261 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC2.71□□□□□ -1.98
FOXA2Q9Y261 USP9YP12-201ENST00000450481 570 ntBASIC2.71□□□□□ -1.98
FOXA2Q9Y261 MTND1P12-201ENST00000455231 147 ntBASIC2.71□□□□□ -1.98
FOXA2Q9Y261 SEM1P1-201ENST00000506694 209 ntBASIC2.71□□□□□ -1.98
FOXA2Q9Y261 FCF1P8-201ENST00000510322 597 ntBASIC2.71□□□□□ -1.98
FOXA2Q9Y261 RNU6-143P-201ENST00000516942 93 ntBASIC2.71□□□□□ -1.98
FOXA2Q9Y261 AC106038.2-201ENST00000520706 568 ntBASIC2.71□□□□□ -1.98
FOXA2Q9Y261 CTHRC1-204ENST00000520880 560 ntTSL 4 BASIC2.71□□□□□ -1.98
FOXA2Q9Y261 C14orf105-204ENST00000526336 598 ntTSL 4 BASIC2.71□□□□□ -1.98
FOXA2Q9Y261 AL137804.1-201ENST00000528872 576 ntTSL 3 BASIC2.71□□□□□ -1.98
FOXA2Q9Y261 ARL2BPP2-201ENST00000550907 489 ntBASIC2.71□□□□□ -1.98
FOXA2Q9Y261 RPS3AP4-201ENST00000555161 764 ntBASIC2.71□□□□□ -1.98
FOXA2Q9Y261 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC2.71□□□□□ -1.98
FOXA2Q9Y261 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC2.71□□□□□ -1.98
FOXA2Q9Y261 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC2.71□□□□□ -1.98
FOXA2Q9Y261 AC037487.4-201ENST00000577423 625 ntTSL 3 BASIC2.71□□□□□ -1.98
FOXA2Q9Y261 MIR3118-1-201ENST00000581787 76 ntBASIC2.71□□□□□ -1.98
FOXA2Q9Y261 NIFKP6-201ENST00000598115 845 ntBASIC2.71□□□□□ -1.98
FOXA2Q9Y261 WISP1-OT1-201ENST00000602893 642 ntBASIC2.71□□□□□ -1.98
FOXA2Q9Y261 AL022161.1-201ENST00000604390 213 ntBASIC2.71□□□□□ -1.98
FOXA2Q9Y261 AC104010.1-201ENST00000616889 150 ntBASIC2.71□□□□□ -1.98
FOXA2Q9Y261 AL392088.2-201ENST00000637607 285 ntBASIC2.71□□□□□ -1.98
FOXA2Q9Y261 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC2.71□□□□□ -1.98
FOXA2Q9Y261 AC093010.3-201ENST00000570269 15214 ntBASIC2.71□□□□□ -1.98
FOXA2Q9Y261 SEPT7-205ENST00000432293 1362 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
FOXA2Q9Y261 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
FOXA2Q9Y261 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC2.71□□□□□ -1.98
FOXA2Q9Y261 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC2.71□□□□□ -1.98
FOXA2Q9Y261 Z83843.1-201ENST00000604070 3685 ntBASIC2.71□□□□□ -1.98
FOXA2Q9Y261 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC2.7□□□□□ -1.98
FOXA2Q9Y261 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC2.7□□□□□ -1.98
FOXA2Q9Y261 CR848007.1-201ENST00000442354 1699 ntBASIC2.7□□□□□ -1.98
FOXA2Q9Y261 AL356274.2-201ENST00000624379 3752 ntBASIC2.7□□□□□ -1.98
FOXA2Q9Y261 BCLAF1P1-201ENST00000505813 2752 ntBASIC2.7□□□□□ -1.98
FOXA2Q9Y261 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC2.7□□□□□ -1.98
FOXA2Q9Y261 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC2.7□□□□□ -1.98
FOXA2Q9Y261 AP000568.1-201ENST00000282964 442 ntBASIC2.7□□□□□ -1.98
FOXA2Q9Y261 SNORD56.3-201ENST00000363507 71 ntBASIC2.7□□□□□ -1.98
FOXA2Q9Y261 RNU6-288P-201ENST00000363690 104 ntBASIC2.7□□□□□ -1.98
FOXA2Q9Y261 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC2.7□□□□□ -1.98
FOXA2Q9Y261 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC2.7□□□□□ -1.98
FOXA2Q9Y261 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC2.7□□□□□ -1.98
FOXA2Q9Y261 SPATA17-AS1-201ENST00000415765 420 ntTSL 5 BASIC2.7□□□□□ -1.98
FOXA2Q9Y261 SEPT2P1-201ENST00000419651 180 ntBASIC2.7□□□□□ -1.98
FOXA2Q9Y261 AC016644.1-201ENST00000438553 434 ntTSL 2 BASIC2.7□□□□□ -1.98
FOXA2Q9Y261 AL592182.1-201ENST00000440897 250 ntTSL 5 BASIC2.7□□□□□ -1.98
FOXA2Q9Y261 UBE2D3P4-201ENST00000441973 436 ntBASIC2.7□□□□□ -1.98
FOXA2Q9Y261 AC096666.1-201ENST00000454965 348 ntTSL 3 BASIC2.7□□□□□ -1.98
FOXA2Q9Y261 RNU6-953P-201ENST00000459154 107 ntBASIC2.7□□□□□ -1.98
FOXA2Q9Y261 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC2.7□□□□□ -1.98
FOXA2Q9Y261 AC025518.1-201ENST00000479856 347 ntBASIC2.7□□□□□ -1.98
FOXA2Q9Y261 LINC02462-201ENST00000503009 430 ntTSL 5 BASIC2.7□□□□□ -1.98
FOXA2Q9Y261 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC2.7□□□□□ -1.98
FOXA2Q9Y261 MRPS36P5-201ENST00000551909 298 ntBASIC2.7□□□□□ -1.98
FOXA2Q9Y261 NACAP3-201ENST00000552100 481 ntBASIC2.7□□□□□ -1.98
FOXA2Q9Y261 AL161757.2-201ENST00000553800 421 ntTSL 3 BASIC2.7□□□□□ -1.98
FOXA2Q9Y261 AL358333.2-201ENST00000556834 529 ntTSL 5 BASIC2.7□□□□□ -1.98
FOXA2Q9Y261 AL157394.1-201ENST00000562983 1224 ntBASIC2.7□□□□□ -1.98
FOXA2Q9Y261 MIR4429-201ENST00000580105 73 ntBASIC2.7□□□□□ -1.98
FOXA2Q9Y261 AC092354.1-201ENST00000606057 376 ntBASIC2.7□□□□□ -1.98
FOXA2Q9Y261 RNU6-87P-201ENST00000607561 108 ntBASIC2.7□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 90.3 ms