Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 SNORA74C-2-201ENST00000411179 201 ntBASIC5.46□□□□□ -1.54
CCDC87Q9NVE4 AL358176.2-201ENST00000425769 204 ntBASIC5.46□□□□□ -1.54
CCDC87Q9NVE4 AC090774.1-201ENST00000435925 246 ntBASIC5.46□□□□□ -1.54
CCDC87Q9NVE4 AL162386.2-201ENST00000442428 457 ntTSL 3 BASIC5.46□□□□□ -1.54
CCDC87Q9NVE4 LAMTOR5P1-201ENST00000444290 270 ntBASIC5.46□□□□□ -1.54
CCDC87Q9NVE4 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC5.46□□□□□ -1.54
CCDC87Q9NVE4 IFNWP4-201ENST00000453148 294 ntBASIC5.46□□□□□ -1.54
CCDC87Q9NVE4 RPL23AP81-201ENST00000455252 467 ntBASIC5.46□□□□□ -1.54
CCDC87Q9NVE4 MTCO3P10-201ENST00000455912 772 ntBASIC5.46□□□□□ -1.54
CCDC87Q9NVE4 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC5.46□□□□□ -1.54
CCDC87Q9NVE4 RNU2-69P-201ENST00000516061 100 ntBASIC5.46□□□□□ -1.54
CCDC87Q9NVE4 RNU4ATAC7P-201ENST00000516280 125 ntBASIC5.46□□□□□ -1.54
CCDC87Q9NVE4 RNU6-1016P-201ENST00000516689 94 ntBASIC5.46□□□□□ -1.54
CCDC87Q9NVE4 AC090151.1-201ENST00000520784 730 ntBASIC5.46□□□□□ -1.54
CCDC87Q9NVE4 IFITM8P-201ENST00000522529 394 ntBASIC5.46□□□□□ -1.54
CCDC87Q9NVE4 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC5.46□□□□□ -1.54
CCDC87Q9NVE4 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC5.46□□□□□ -1.54
CCDC87Q9NVE4 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC5.46□□□□□ -1.54
CCDC87Q9NVE4 AC068446.3-201ENST00000555285 382 ntBASIC5.46□□□□□ -1.54
CCDC87Q9NVE4 HNRNPCP4-201ENST00000571636 900 ntBASIC5.46□□□□□ -1.54
CCDC87Q9NVE4 MIR5692C1-201ENST00000585309 91 ntBASIC5.46□□□□□ -1.54
CCDC87Q9NVE4 AL161756.2-201ENST00000604597 246 ntBASIC5.46□□□□□ -1.54
CCDC87Q9NVE4 AL160290.3-201ENST00000604869 165 ntBASIC5.46□□□□□ -1.54
CCDC87Q9NVE4 ATP1B3P1-201ENST00000605365 821 ntBASIC5.46□□□□□ -1.54
CCDC87Q9NVE4 AL450472.3-201ENST00000615578 367 ntBASIC5.46□□□□□ -1.54
CCDC87Q9NVE4 AL355365.1-201ENST00000616480 294 ntBASIC5.46□□□□□ -1.54
CCDC87Q9NVE4 AC010205.1-201ENST00000616668 449 ntBASIC5.46□□□□□ -1.54
CCDC87Q9NVE4 AL132822.1-201ENST00000617063 513 ntBASIC5.46□□□□□ -1.54
CCDC87Q9NVE4 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
CCDC87Q9NVE4 DNAH6-202ENST00000389394 12795 ntAPPRIS P1 TSL 5 BASIC5.46□□□□□ -1.54
CCDC87Q9NVE4 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC5.45□□□□□ -1.54
CCDC87Q9NVE4 ARHGAP28-205ENST00000531294 2171 ntAPPRIS ALT2 TSL 5 BASIC5.45□□□□□ -1.54
CCDC87Q9NVE4 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC5.45□□□□□ -1.54
CCDC87Q9NVE4 UBR1-201ENST00000290650 7761 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
CCDC87Q9NVE4 OBSCN-210ENST00000570156 26925 ntAPPRIS P1 TSL 5 BASIC5.45□□□□□ -1.54
CCDC87Q9NVE4 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC5.45□□□□□ -1.54
CCDC87Q9NVE4 RNU6-310P-201ENST00000384655 107 ntBASIC5.45□□□□□ -1.54
CCDC87Q9NVE4 RNU6-1105P-201ENST00000384774 107 ntBASIC5.45□□□□□ -1.54
CCDC87Q9NVE4 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC5.45□□□□□ -1.54
CCDC87Q9NVE4 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC5.45□□□□□ -1.54
CCDC87Q9NVE4 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC5.45□□□□□ -1.54
CCDC87Q9NVE4 RPL7P28-201ENST00000437739 740 ntBASIC5.45□□□□□ -1.54
CCDC87Q9NVE4 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC5.45□□□□□ -1.54
CCDC87Q9NVE4 AL035666.1-201ENST00000446195 348 ntBASIC5.45□□□□□ -1.54
CCDC87Q9NVE4 PTMAP3-201ENST00000447474 330 ntBASIC5.45□□□□□ -1.54
CCDC87Q9NVE4 AC008264.1-201ENST00000447612 367 ntBASIC5.45□□□□□ -1.54
CCDC87Q9NVE4 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC5.45□□□□□ -1.54
CCDC87Q9NVE4 RNU6-953P-201ENST00000459154 107 ntBASIC5.45□□□□□ -1.54
CCDC87Q9NVE4 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC5.45□□□□□ -1.54
CCDC87Q9NVE4 AC097473.1-201ENST00000508142 408 ntBASIC5.45□□□□□ -1.54
CCDC87Q9NVE4 AC026726.1-201ENST00000512859 601 ntBASIC5.45□□□□□ -1.54
CCDC87Q9NVE4 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
CCDC87Q9NVE4 Y_RNA.689-201ENST00000516589 107 ntBASIC5.45□□□□□ -1.54
CCDC87Q9NVE4 AC008694.2-201ENST00000517591 306 ntBASIC5.45□□□□□ -1.54
CCDC87Q9NVE4 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC5.45□□□□□ -1.54
CCDC87Q9NVE4 AP000889.1-201ENST00000530968 660 ntBASIC5.45□□□□□ -1.54
CCDC87Q9NVE4 AC023442.1-201ENST00000531247 422 ntBASIC5.45□□□□□ -1.54
CCDC87Q9NVE4 DNAJC8P1-201ENST00000554535 372 ntBASIC5.45□□□□□ -1.54
CCDC87Q9NVE4 AC100830.2-201ENST00000581636 240 ntBASIC5.45□□□□□ -1.54
CCDC87Q9NVE4 HMGB2P1-201ENST00000591146 634 ntBASIC5.45□□□□□ -1.54
CCDC87Q9NVE4 AC012669.1-201ENST00000603209 283 ntBASIC5.45□□□□□ -1.54
CCDC87Q9NVE4 IGHV3-29-201ENST00000604817 344 ntBASIC5.45□□□□□ -1.54
CCDC87Q9NVE4 FAM157A-202ENST00000615155 405 ntBASIC5.45□□□□□ -1.54
CCDC87Q9NVE4 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC5.45□□□□□ -1.54
CCDC87Q9NVE4 AL669831.3-213ENST00000636676 183 ntBASIC5.45□□□□□ -1.54
CCDC87Q9NVE4 AC012442.3-202ENST00000636742 206 ntBASIC5.45□□□□□ -1.54
CCDC87Q9NVE4 SLCO1A2-201ENST00000307378 7682 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
CCDC87Q9NVE4 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC5.45□□□□□ -1.54
CCDC87Q9NVE4 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
CCDC87Q9NVE4 MTND5P1-201ENST00000445440 1375 ntBASIC5.44□□□□□ -1.54
CCDC87Q9NVE4 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC5.44□□□□□ -1.54
CCDC87Q9NVE4 AL731532.2-201ENST00000623542 1953 ntBASIC5.44□□□□□ -1.54
CCDC87Q9NVE4 AL139811.1-201ENST00000424779 2299 ntBASIC5.44□□□□□ -1.54
CCDC87Q9NVE4 RNA5SP307-201ENST00000362863 116 ntBASIC5.44□□□□□ -1.54
CCDC87Q9NVE4 RNU1-20P-201ENST00000363314 162 ntBASIC5.44□□□□□ -1.54
CCDC87Q9NVE4 RNU6-715P-201ENST00000365204 103 ntBASIC5.44□□□□□ -1.54
CCDC87Q9NVE4 RNU6-1040P-201ENST00000383974 107 ntBASIC5.44□□□□□ -1.54
CCDC87Q9NVE4 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC5.44□□□□□ -1.54
CCDC87Q9NVE4 RNU6-308P-201ENST00000390957 107 ntBASIC5.44□□□□□ -1.54
CCDC87Q9NVE4 AL121834.1-202ENST00000404494 277 ntBASIC5.44□□□□□ -1.54
CCDC87Q9NVE4 RNU6-712P-201ENST00000410558 100 ntBASIC5.44□□□□□ -1.54
CCDC87Q9NVE4 PPP1R11P2-201ENST00000423543 382 ntBASIC5.44□□□□□ -1.54
CCDC87Q9NVE4 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC5.44□□□□□ -1.54
CCDC87Q9NVE4 RPL23AP25-201ENST00000430973 463 ntBASIC5.44□□□□□ -1.54
CCDC87Q9NVE4 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC5.44□□□□□ -1.54
CCDC87Q9NVE4 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC5.44□□□□□ -1.54
CCDC87Q9NVE4 snoU13.24-201ENST00000458998 104 ntBASIC5.44□□□□□ -1.54
CCDC87Q9NVE4 HMGB3P16-201ENST00000508037 287 ntBASIC5.44□□□□□ -1.54
CCDC87Q9NVE4 AC116337.1-201ENST00000509680 687 ntBASIC5.44□□□□□ -1.54
CCDC87Q9NVE4 RNU6-1046P-201ENST00000516538 107 ntBASIC5.44□□□□□ -1.54
CCDC87Q9NVE4 RN7SKP295-201ENST00000517264 153 ntBASIC5.44□□□□□ -1.54
CCDC87Q9NVE4 AC008641.1-201ENST00000523781 248 ntTSL 3 BASIC5.44□□□□□ -1.54
CCDC87Q9NVE4 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC5.44□□□□□ -1.54
CCDC87Q9NVE4 OR4H12P-201ENST00000556269 907 ntBASIC5.44□□□□□ -1.54
CCDC87Q9NVE4 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC5.44□□□□□ -1.54
CCDC87Q9NVE4 HSPE1P5-201ENST00000561489 272 ntBASIC5.44□□□□□ -1.54
CCDC87Q9NVE4 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC5.44□□□□□ -1.54
CCDC87Q9NVE4 AC067852.3-201ENST00000589177 561 ntBASIC5.44□□□□□ -1.54
CCDC87Q9NVE4 LINC02532-209ENST00000602934 2464 ntTSL 2 BASIC5.44□□□□□ -1.54
CCDC87Q9NVE4 AC083806.3-201ENST00000614016 455 ntBASIC5.44□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 105.6 ms