Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 AC083760.1-201ENST00000589621 670 ntBASIC3.42□□□□□ -1.86
ZNF541Q9H0D2 AC092628.2-201ENST00000622492 339 ntBASIC3.42□□□□□ -1.86
ZNF541Q9H0D2 AC019226.1-201ENST00000625666 515 ntBASIC3.42□□□□□ -1.86
ZNF541Q9H0D2 AC073476.4-201ENST00000628409 72 ntBASIC3.42□□□□□ -1.86
ZNF541Q9H0D2 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
ZNF541Q9H0D2 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
ZNF541Q9H0D2 ASPN-201ENST00000375543 2237 ntTSL 2 BASIC3.41□□□□□ -1.86
ZNF541Q9H0D2 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
ZNF541Q9H0D2 SNORA26.8-201ENST00000391306 124 ntBASIC3.41□□□□□ -1.86
ZNF541Q9H0D2 BPIFC-202ENST00000397450 458 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
ZNF541Q9H0D2 RPS3AP24-201ENST00000407896 734 ntBASIC3.41□□□□□ -1.86
ZNF541Q9H0D2 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC3.41□□□□□ -1.86
ZNF541Q9H0D2 SPATA17-AS1-201ENST00000415765 420 ntTSL 5 BASIC3.41□□□□□ -1.86
ZNF541Q9H0D2 AC009963.1-201ENST00000417265 157 ntBASIC3.41□□□□□ -1.86
ZNF541Q9H0D2 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC3.41□□□□□ -1.86
ZNF541Q9H0D2 AL023581.1-201ENST00000423500 455 ntTSL 2 BASIC3.41□□□□□ -1.86
ZNF541Q9H0D2 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC3.41□□□□□ -1.86
ZNF541Q9H0D2 AL662791.1-201ENST00000441992 928 ntBASIC3.41□□□□□ -1.86
ZNF541Q9H0D2 snoU13.15-201ENST00000459407 104 ntBASIC3.41□□□□□ -1.86
ZNF541Q9H0D2 RPS23P3-201ENST00000470993 430 ntBASIC3.41□□□□□ -1.86
ZNF541Q9H0D2 RPS20P22-201ENST00000473700 357 ntBASIC3.41□□□□□ -1.86
ZNF541Q9H0D2 RN7SL442P-201ENST00000473804 320 ntBASIC3.41□□□□□ -1.86
ZNF541Q9H0D2 AP000797.1-201ENST00000478870 387 ntBASIC3.41□□□□□ -1.86
ZNF541Q9H0D2 AC108860.1-201ENST00000484521 383 ntBASIC3.41□□□□□ -1.86
ZNF541Q9H0D2 AP001205.1-201ENST00000521625 449 ntTSL 3 BASIC3.41□□□□□ -1.86
ZNF541Q9H0D2 AP000873.5-201ENST00000533906 236 ntBASIC3.41□□□□□ -1.86
ZNF541Q9H0D2 MAL2-203ENST00000534619 578 ntTSL 4 BASIC3.41□□□□□ -1.86
ZNF541Q9H0D2 LINC01491-201ENST00000558434 505 ntTSL 3 BASIC3.41□□□□□ -1.86
ZNF541Q9H0D2 MED28P6-201ENST00000558776 231 ntBASIC3.41□□□□□ -1.86
ZNF541Q9H0D2 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC3.41□□□□□ -1.86
ZNF541Q9H0D2 AP000403.1-201ENST00000603349 851 ntBASIC3.41□□□□□ -1.86
ZNF541Q9H0D2 AC106900.2-201ENST00000604994 317 ntBASIC3.41□□□□□ -1.86
ZNF541Q9H0D2 BCRP9-201ENST00000605312 388 ntBASIC3.41□□□□□ -1.86
ZNF541Q9H0D2 AC004067.1-201ENST00000608733 700 ntBASIC3.41□□□□□ -1.86
ZNF541Q9H0D2 AL591516.1-201ENST00000611326 274 ntBASIC3.41□□□□□ -1.86
ZNF541Q9H0D2 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC3.41□□□□□ -1.86
ZNF541Q9H0D2 XIST_intron.1-201ENST00000619444 68 ntBASIC3.41□□□□□ -1.86
ZNF541Q9H0D2 AL353748.2-201ENST00000622148 471 ntBASIC3.41□□□□□ -1.86
ZNF541Q9H0D2 ZRANB2-AS2-221ENST00000624050 629 ntTSL 5 BASIC3.41□□□□□ -1.86
ZNF541Q9H0D2 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC3.41□□□□□ -1.86
ZNF541Q9H0D2 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC3.41□□□□□ -1.86
ZNF541Q9H0D2 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
ZNF541Q9H0D2 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC3.41□□□□□ -1.86
ZNF541Q9H0D2 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.4□□□□□ -1.86
ZNF541Q9H0D2 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.86
ZNF541Q9H0D2 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC3.4□□□□□ -1.86
ZNF541Q9H0D2 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.86
ZNF541Q9H0D2 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC3.4□□□□□ -1.86
ZNF541Q9H0D2 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC3.4□□□□□ -1.87
ZNF541Q9H0D2 ZNF658B-202ENST00000615961 3375 ntBASIC3.4□□□□□ -1.87
ZNF541Q9H0D2 ANKRD20A17P-201ENST00000511745 1330 ntBASIC3.4□□□□□ -1.87
ZNF541Q9H0D2 RNU5A-1-201ENST00000362698 116 ntBASIC3.4□□□□□ -1.87
ZNF541Q9H0D2 RNA5SP21-201ENST00000410917 96 ntBASIC3.4□□□□□ -1.87
ZNF541Q9H0D2 RPL17P12-201ENST00000413391 526 ntBASIC3.4□□□□□ -1.87
ZNF541Q9H0D2 UBE2FP1-201ENST00000416536 447 ntBASIC3.4□□□□□ -1.87
ZNF541Q9H0D2 RPL7L1P10-201ENST00000427790 463 ntBASIC3.4□□□□□ -1.87
ZNF541Q9H0D2 AC109583.1-201ENST00000432156 268 ntBASIC3.4□□□□□ -1.87
ZNF541Q9H0D2 AC098826.1-201ENST00000433943 471 ntBASIC3.4□□□□□ -1.87
ZNF541Q9H0D2 RABEPKP1-201ENST00000440529 1026 ntBASIC3.4□□□□□ -1.87
ZNF541Q9H0D2 AC118469.1-201ENST00000442943 488 ntBASIC3.4□□□□□ -1.87
ZNF541Q9H0D2 GDI2P2-201ENST00000445131 608 ntBASIC3.4□□□□□ -1.87
ZNF541Q9H0D2 EPS15P1-201ENST00000448836 336 ntBASIC3.4□□□□□ -1.87
ZNF541Q9H0D2 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC3.4□□□□□ -1.87
ZNF541Q9H0D2 AL590365.1-201ENST00000450788 243 ntBASIC3.4□□□□□ -1.87
ZNF541Q9H0D2 AC004930.1-201ENST00000470677 254 ntTSL 2 BASIC3.4□□□□□ -1.87
ZNF541Q9H0D2 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC3.4□□□□□ -1.87
ZNF541Q9H0D2 SETP11-201ENST00000473027 690 ntBASIC3.4□□□□□ -1.87
ZNF541Q9H0D2 PLSCR5-AS1-201ENST00000473817 450 ntTSL 3 BASIC3.4□□□□□ -1.87
ZNF541Q9H0D2 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC3.4□□□□□ -1.87
ZNF541Q9H0D2 AC112204.1-201ENST00000502591 103 ntBASIC3.4□□□□□ -1.87
ZNF541Q9H0D2 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC3.4□□□□□ -1.87
ZNF541Q9H0D2 AC093297.2-205ENST00000508123 572 ntTSL 3 BASIC3.4□□□□□ -1.87
ZNF541Q9H0D2 AC093831.1-201ENST00000509166 434 ntTSL 3 BASIC3.4□□□□□ -1.87
ZNF541Q9H0D2 HIGD1AP10-201ENST00000527837 282 ntBASIC3.4□□□□□ -1.87
ZNF541Q9H0D2 AC022240.1-201ENST00000532065 684 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
ZNF541Q9H0D2 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
ZNF541Q9H0D2 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC3.4□□□□□ -1.87
ZNF541Q9H0D2 AC055876.1-202ENST00000567053 138 ntBASIC3.4□□□□□ -1.87
ZNF541Q9H0D2 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC3.4□□□□□ -1.87
ZNF541Q9H0D2 AL022161.1-201ENST00000604390 213 ntBASIC3.4□□□□□ -1.87
ZNF541Q9H0D2 AL109811.3-202ENST00000612387 651 ntTSL 3 BASIC3.4□□□□□ -1.87
ZNF541Q9H0D2 AC090970.3-201ENST00000612566 866 ntBASIC3.4□□□□□ -1.87
ZNF541Q9H0D2 MIR6130-201ENST00000619419 109 ntBASIC3.4□□□□□ -1.87
ZNF541Q9H0D2 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.4□□□□□ -1.87
ZNF541Q9H0D2 CAPZA2-214ENST00000628758 525 ntTSL 5 BASIC3.4□□□□□ -1.87
ZNF541Q9H0D2 SATB1-AS1-269ENST00000630766 591 ntTSL 5 BASIC3.4□□□□□ -1.87
ZNF541Q9H0D2 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
ZNF541Q9H0D2 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC3.39□□□□□ -1.87
ZNF541Q9H0D2 AKAP14-201ENST00000334356 608 ntAPPRIS ALT2 TSL 5 BASIC3.39□□□□□ -1.87
ZNF541Q9H0D2 DEFB108F-201ENST00000344638 222 ntBASIC3.39□□□□□ -1.87
ZNF541Q9H0D2 Y_RNA.97-201ENST00000363094 102 ntBASIC3.39□□□□□ -1.87
ZNF541Q9H0D2 SNORD56.3-201ENST00000363507 71 ntBASIC3.39□□□□□ -1.87
ZNF541Q9H0D2 RNU5E-5P-201ENST00000365379 116 ntBASIC3.39□□□□□ -1.87
ZNF541Q9H0D2 MEIG1-201ENST00000378240 507 ntAPPRIS P1 TSL 2 BASIC3.39□□□□□ -1.87
ZNF541Q9H0D2 AL136372.1-201ENST00000403060 228 ntBASIC3.39□□□□□ -1.87
ZNF541Q9H0D2 U3.42-201ENST00000408746 214 ntBASIC3.39□□□□□ -1.87
ZNF541Q9H0D2 RNU4-65P-201ENST00000410473 140 ntBASIC3.39□□□□□ -1.87
ZNF541Q9H0D2 RNA5SP107-201ENST00000411358 122 ntBASIC3.39□□□□□ -1.87
ZNF541Q9H0D2 BX276092.3-201ENST00000424182 230 ntBASIC3.39□□□□□ -1.87
ZNF541Q9H0D2 TOMM20P4-201ENST00000427861 435 ntBASIC3.39□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 95.4 ms