Protein–RNA interactions for Protein: Q99742

NPAS1, Neuronal PAS domain-containing protein 1, humanhuman

Predictions only

Length 590 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS1Q99742 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC3.53□□□□□ -1.84
NPAS1Q99742 API5P2-201ENST00000397055 1498 ntBASIC3.53□□□□□ -1.84
NPAS1Q99742 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
NPAS1Q99742 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC3.53□□□□□ -1.85
NPAS1Q99742 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.85
NPAS1Q99742 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC3.52□□□□□ -1.85
NPAS1Q99742 MTND4P14-201ENST00000435799 1354 ntBASIC3.52□□□□□ -1.85
NPAS1Q99742 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC3.52□□□□□ -1.85
NPAS1Q99742 Y_RNA.126-201ENST00000363382 111 ntBASIC3.52□□□□□ -1.85
NPAS1Q99742 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC3.52□□□□□ -1.85
NPAS1Q99742 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC3.52□□□□□ -1.85
NPAS1Q99742 MAPK8-202ENST00000374174 739 ntTSL 3 BASIC3.52□□□□□ -1.85
NPAS1Q99742 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC3.52□□□□□ -1.85
NPAS1Q99742 U1.1-201ENST00000384101 164 ntBASIC3.52□□□□□ -1.85
NPAS1Q99742 RNU2-37P-201ENST00000410695 177 ntBASIC3.52□□□□□ -1.85
NPAS1Q99742 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC3.52□□□□□ -1.85
NPAS1Q99742 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC3.52□□□□□ -1.85
NPAS1Q99742 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC3.52□□□□□ -1.85
NPAS1Q99742 KCTD9P3-201ENST00000434597 1169 ntBASIC3.52□□□□□ -1.85
NPAS1Q99742 SEPT14P3-201ENST00000439401 183 ntBASIC3.52□□□□□ -1.85
NPAS1Q99742 AC024908.1-202ENST00000441907 764 ntTSL 2 BASIC3.52□□□□□ -1.85
NPAS1Q99742 AL732372.2-207ENST00000445840 183 ntBASIC3.52□□□□□ -1.85
NPAS1Q99742 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC3.52□□□□□ -1.85
NPAS1Q99742 SEPT14P2-201ENST00000453405 183 ntBASIC3.52□□□□□ -1.85
NPAS1Q99742 AL356010.1-201ENST00000456364 102 ntBASIC3.52□□□□□ -1.85
NPAS1Q99742 RNU6-420P-201ENST00000458780 107 ntBASIC3.52□□□□□ -1.85
NPAS1Q99742 AC083798.1-201ENST00000472671 131 ntBASIC3.52□□□□□ -1.85
NPAS1Q99742 AL049830.2-201ENST00000480072 201 ntBASIC3.52□□□□□ -1.85
NPAS1Q99742 MTAPP1-201ENST00000489154 819 ntBASIC3.52□□□□□ -1.85
NPAS1Q99742 AC109927.2-201ENST00000506416 303 ntBASIC3.52□□□□□ -1.85
NPAS1Q99742 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC3.52□□□□□ -1.85
NPAS1Q99742 AC026726.1-201ENST00000512859 601 ntBASIC3.52□□□□□ -1.85
NPAS1Q99742 SEPT14P4-201ENST00000513445 186 ntBASIC3.52□□□□□ -1.85
NPAS1Q99742 SNORD27.1-201ENST00000516319 72 ntBASIC3.52□□□□□ -1.85
NPAS1Q99742 SCARNA15.2-201ENST00000516409 127 ntBASIC3.52□□□□□ -1.85
NPAS1Q99742 RNA5SP291-201ENST00000517222 105 ntBASIC3.52□□□□□ -1.85
NPAS1Q99742 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC3.52□□□□□ -1.85
NPAS1Q99742 IGKV2D-19-201ENST00000523346 262 ntBASIC3.52□□□□□ -1.85
NPAS1Q99742 FO082796.1-201ENST00000523795 183 ntBASIC3.52□□□□□ -1.85
NPAS1Q99742 RANP3-201ENST00000530970 276 ntBASIC3.52□□□□□ -1.85
NPAS1Q99742 OR5B19P-201ENST00000531766 928 ntBASIC3.52□□□□□ -1.85
NPAS1Q99742 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC3.52□□□□□ -1.85
NPAS1Q99742 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC3.52□□□□□ -1.85
NPAS1Q99742 AP005205.1-201ENST00000563503 508 ntBASIC3.52□□□□□ -1.85
NPAS1Q99742 AC106785.1-201ENST00000565935 262 ntBASIC3.52□□□□□ -1.85
NPAS1Q99742 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC3.52□□□□□ -1.85
NPAS1Q99742 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC3.52□□□□□ -1.85
NPAS1Q99742 AC079684.1-201ENST00000621405 437 ntBASIC3.52□□□□□ -1.85
NPAS1Q99742 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.52□□□□□ -1.85
NPAS1Q99742 YWHAEP7-203ENST00000622054 312 ntBASIC3.52□□□□□ -1.85
NPAS1Q99742 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC3.52□□□□□ -1.85
NPAS1Q99742 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC3.52□□□□□ -1.85
NPAS1Q99742 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC3.52□□□□□ -1.85
NPAS1Q99742 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC3.52□□□□□ -1.85
NPAS1Q99742 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
NPAS1Q99742 AL672296.1-201ENST00000427780 2158 ntBASIC3.52□□□□□ -1.85
NPAS1Q99742 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC3.52□□□□□ -1.85
NPAS1Q99742 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
NPAS1Q99742 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC3.52□□□□□ -1.85
NPAS1Q99742 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
NPAS1Q99742 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC3.51□□□□□ -1.85
NPAS1Q99742 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC3.51□□□□□ -1.85
NPAS1Q99742 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
NPAS1Q99742 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC3.51□□□□□ -1.85
NPAS1Q99742 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
NPAS1Q99742 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
NPAS1Q99742 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC3.51□□□□□ -1.85
NPAS1Q99742 RNU6-1029P-201ENST00000384109 107 ntBASIC3.51□□□□□ -1.85
NPAS1Q99742 MIR30B-201ENST00000384850 88 ntBASIC3.51□□□□□ -1.85
NPAS1Q99742 SNORA57.1-201ENST00000391227 145 ntBASIC3.51□□□□□ -1.85
NPAS1Q99742 SOD2P1-201ENST00000396543 562 ntBASIC3.51□□□□□ -1.85
NPAS1Q99742 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC3.51□□□□□ -1.85
NPAS1Q99742 MTCYBP8-201ENST00000422855 651 ntBASIC3.51□□□□□ -1.85
NPAS1Q99742 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC3.51□□□□□ -1.85
NPAS1Q99742 AL034349.1-201ENST00000458367 549 ntTSL 5 BASIC3.51□□□□□ -1.85
NPAS1Q99742 RNU6-261P-201ENST00000459506 102 ntBASIC3.51□□□□□ -1.85
NPAS1Q99742 RPL31P58-201ENST00000469001 379 ntBASIC3.51□□□□□ -1.85
NPAS1Q99742 RN7SL330P-201ENST00000469709 307 ntBASIC3.51□□□□□ -1.85
NPAS1Q99742 AC233702.1-201ENST00000482905 502 ntBASIC3.51□□□□□ -1.85
NPAS1Q99742 AL163973.1-201ENST00000484753 577 ntBASIC3.51□□□□□ -1.85
NPAS1Q99742 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
NPAS1Q99742 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC3.51□□□□□ -1.85
NPAS1Q99742 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC3.51□□□□□ -1.85
NPAS1Q99742 RNA5SP208-201ENST00000516156 78 ntBASIC3.51□□□□□ -1.85
NPAS1Q99742 RNU6-123P-201ENST00000516163 102 ntBASIC3.51□□□□□ -1.85
NPAS1Q99742 RNU6-1178P-201ENST00000516674 107 ntBASIC3.51□□□□□ -1.85
NPAS1Q99742 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC3.51□□□□□ -1.85
NPAS1Q99742 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC3.51□□□□□ -1.85
NPAS1Q99742 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC3.51□□□□□ -1.85
NPAS1Q99742 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC3.51□□□□□ -1.85
NPAS1Q99742 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC3.51□□□□□ -1.85
NPAS1Q99742 MIR4775-201ENST00000581168 75 ntBASIC3.51□□□□□ -1.85
NPAS1Q99742 AC093227.2-201ENST00000589357 285 ntBASIC3.51□□□□□ -1.85
NPAS1Q99742 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC3.51□□□□□ -1.85
NPAS1Q99742 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC3.51□□□□□ -1.85
NPAS1Q99742 NRBF2P5-201ENST00000603087 788 ntBASIC3.51□□□□□ -1.85
NPAS1Q99742 AC104458.1-201ENST00000608243 463 ntBASIC3.51□□□□□ -1.85
NPAS1Q99742 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC3.51□□□□□ -1.85
NPAS1Q99742 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.51□□□□□ -1.85
NPAS1Q99742 AC128687.2-201ENST00000609657 566 ntBASIC3.51□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 112.2 ms