Protein–RNA interactions for Protein: Q96MW1

CCDC43, Coiled-coil domain-containing protein 43, humanhuman

Known RBP Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43Q96MW1 LAMTOR5P1-201ENST00000444290 270 ntBASIC3.06□□□□□ -1.92
CCDC43Q96MW1 COX6CP2-201ENST00000444980 225 ntBASIC3.06□□□□□ -1.92
CCDC43Q96MW1 RPL39P40-201ENST00000445481 146 ntBASIC3.06□□□□□ -1.92
CCDC43Q96MW1 RPS15AP27-201ENST00000449183 343 ntBASIC3.06□□□□□ -1.92
CCDC43Q96MW1 AC121764.2-201ENST00000469806 587 ntTSL 2 BASIC3.06□□□□□ -1.92
CCDC43Q96MW1 AC091951.3-201ENST00000504093 246 ntBASIC3.06□□□□□ -1.92
CCDC43Q96MW1 TEMN3-AS1-201ENST00000510211 401 ntTSL 3 BASIC3.06□□□□□ -1.92
CCDC43Q96MW1 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC3.06□□□□□ -1.92
CCDC43Q96MW1 MEF2C-AS1-212ENST00000514158 713 ntTSL 5 BASIC3.06□□□□□ -1.92
CCDC43Q96MW1 AC026241.1-201ENST00000517873 2142 ntBASIC3.06□□□□□ -1.92
CCDC43Q96MW1 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
CCDC43Q96MW1 AP000857.1-201ENST00000532151 543 ntBASIC3.06□□□□□ -1.92
CCDC43Q96MW1 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC3.06□□□□□ -1.92
CCDC43Q96MW1 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC3.06□□□□□ -1.92
CCDC43Q96MW1 MTND5P33-201ENST00000571250 1450 ntBASIC3.06□□□□□ -1.92
CCDC43Q96MW1 VN1R90P-201ENST00000595717 726 ntBASIC3.06□□□□□ -1.92
CCDC43Q96MW1 AC019159.1-201ENST00000605094 187 ntBASIC3.06□□□□□ -1.92
CCDC43Q96MW1 ATP1B3P1-201ENST00000605365 821 ntBASIC3.06□□□□□ -1.92
CCDC43Q96MW1 AL355493.4-201ENST00000618530 292 ntBASIC3.06□□□□□ -1.92
CCDC43Q96MW1 AP000676.3-201ENST00000623299 569 ntBASIC3.06□□□□□ -1.92
CCDC43Q96MW1 PSMD5-AS1-215ENST00000640622 205 ntBASIC3.06□□□□□ -1.92
CCDC43Q96MW1 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
CCDC43Q96MW1 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
CCDC43Q96MW1 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
CCDC43Q96MW1 SNORD56.5-201ENST00000364281 72 ntBASIC3.05□□□□□ -1.92
CCDC43Q96MW1 RPL21P75-201ENST00000396599 483 ntBASIC3.05□□□□□ -1.92
CCDC43Q96MW1 RPL21P28-201ENST00000401418 483 ntBASIC3.05□□□□□ -1.92
CCDC43Q96MW1 AL592114.1-201ENST00000403842 483 ntBASIC3.05□□□□□ -1.92
CCDC43Q96MW1 RNA5SP21-201ENST00000410917 96 ntBASIC3.05□□□□□ -1.92
CCDC43Q96MW1 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
CCDC43Q96MW1 RAP1BP1-201ENST00000412709 553 ntBASIC3.05□□□□□ -1.92
CCDC43Q96MW1 SDR42E1P3-201ENST00000438345 502 ntBASIC3.05□□□□□ -1.92
CCDC43Q96MW1 RPL23AP35-201ENST00000451906 501 ntBASIC3.05□□□□□ -1.92
CCDC43Q96MW1 AL390783.1-203ENST00000457058 248 ntTSL 3 BASIC3.05□□□□□ -1.92
CCDC43Q96MW1 AL606519.1-201ENST00000458146 580 ntTSL 2 BASIC3.05□□□□□ -1.92
CCDC43Q96MW1 AC008481.1-201ENST00000463278 396 ntBASIC3.05□□□□□ -1.92
CCDC43Q96MW1 RPL21P39-201ENST00000463605 483 ntBASIC3.05□□□□□ -1.92
CCDC43Q96MW1 MRPS17P3-201ENST00000465453 385 ntBASIC3.05□□□□□ -1.92
CCDC43Q96MW1 PTPRG-AS1-202ENST00000466893 823 ntTSL 4 BASIC3.05□□□□□ -1.92
CCDC43Q96MW1 RPL21P93-201ENST00000480465 489 ntBASIC3.05□□□□□ -1.92
CCDC43Q96MW1 AL049873.1-201ENST00000480540 376 ntBASIC3.05□□□□□ -1.92
CCDC43Q96MW1 AC087190.1-201ENST00000484462 480 ntBASIC3.05□□□□□ -1.92
CCDC43Q96MW1 RPS29P20-201ENST00000489592 171 ntBASIC3.05□□□□□ -1.92
CCDC43Q96MW1 AC093591.1-201ENST00000491435 481 ntBASIC3.05□□□□□ -1.92
CCDC43Q96MW1 RPL21P16-201ENST00000495531 483 ntBASIC3.05□□□□□ -1.92
CCDC43Q96MW1 LINC02465-201ENST00000507099 532 ntTSL 4 BASIC3.05□□□□□ -1.92
CCDC43Q96MW1 MTND5P4-201ENST00000514978 288 ntBASIC3.05□□□□□ -1.92
CCDC43Q96MW1 MEG8-218ENST00000556720 456 ntTSL 3 BASIC3.05□□□□□ -1.92
CCDC43Q96MW1 AL133153.1-201ENST00000557756 303 ntBASIC3.05□□□□□ -1.92
CCDC43Q96MW1 NR2F2-AS1-208ENST00000560395 441 ntTSL 5 BASIC3.05□□□□□ -1.92
CCDC43Q96MW1 AC087465.1-201ENST00000560574 245 ntBASIC3.05□□□□□ -1.92
CCDC43Q96MW1 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC3.05□□□□□ -1.92
CCDC43Q96MW1 MTCO3P13-201ENST00000577757 781 ntBASIC3.05□□□□□ -1.92
CCDC43Q96MW1 AC005498.1-201ENST00000592125 465 ntBASIC3.05□□□□□ -1.92
CCDC43Q96MW1 AC099811.4-201ENST00000592536 496 ntTSL 2 BASIC3.05□□□□□ -1.92
CCDC43Q96MW1 BNIP3P39-201ENST00000601077 554 ntBASIC3.05□□□□□ -1.92
CCDC43Q96MW1 AL391001.1-201ENST00000602747 715 ntBASIC3.05□□□□□ -1.92
CCDC43Q96MW1 AL355877.2-201ENST00000603670 358 ntBASIC3.05□□□□□ -1.92
CCDC43Q96MW1 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC3.05□□□□□ -1.92
CCDC43Q96MW1 DLEU1_2.1-201ENST00000617920 342 ntBASIC3.05□□□□□ -1.92
CCDC43Q96MW1 AC007998.5-201ENST00000622938 237 ntBASIC3.05□□□□□ -1.92
CCDC43Q96MW1 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC3.05□□□□□ -1.92
CCDC43Q96MW1 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC3.05□□□□□ -1.92
CCDC43Q96MW1 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC3.05□□□□□ -1.92
CCDC43Q96MW1 CR848007.1-201ENST00000442354 1699 ntBASIC3.04□□□□□ -1.92
CCDC43Q96MW1 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
CCDC43Q96MW1 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC3.04□□□□□ -1.92
CCDC43Q96MW1 RNU6-859P-201ENST00000362728 107 ntBASIC3.04□□□□□ -1.92
CCDC43Q96MW1 RNU6-884P-201ENST00000363889 107 ntBASIC3.04□□□□□ -1.92
CCDC43Q96MW1 U8.9-201ENST00000365667 134 ntBASIC3.04□□□□□ -1.92
CCDC43Q96MW1 RNU6-83P-201ENST00000384568 112 ntBASIC3.04□□□□□ -1.92
CCDC43Q96MW1 AC119751.3-201ENST00000399720 670 ntBASIC3.04□□□□□ -1.92
CCDC43Q96MW1 MTND4P13-201ENST00000402078 1023 ntBASIC3.04□□□□□ -1.92
CCDC43Q96MW1 RPL21P24-201ENST00000413752 448 ntBASIC3.04□□□□□ -1.92
CCDC43Q96MW1 SSR1P2-201ENST00000415208 787 ntBASIC3.04□□□□□ -1.92
CCDC43Q96MW1 AL391832.1-201ENST00000423963 423 ntTSL 5 BASIC3.04□□□□□ -1.92
CCDC43Q96MW1 LINC01884-201ENST00000433429 440 ntTSL 3 BASIC3.04□□□□□ -1.92
CCDC43Q96MW1 AC010631.1-201ENST00000474150 156 ntBASIC3.04□□□□□ -1.92
CCDC43Q96MW1 RPS27AP9-201ENST00000477681 438 ntBASIC3.04□□□□□ -1.92
CCDC43Q96MW1 RN7SL297P-201ENST00000483161 293 ntBASIC3.04□□□□□ -1.92
CCDC43Q96MW1 RPL23AP70-201ENST00000483361 460 ntBASIC3.04□□□□□ -1.92
CCDC43Q96MW1 UBA6-AS1-204ENST00000502758 547 ntTSL 4 BASIC3.04□□□□□ -1.92
CCDC43Q96MW1 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC3.04□□□□□ -1.92
CCDC43Q96MW1 MRPS36P2-201ENST00000512569 299 ntBASIC3.04□□□□□ -1.92
CCDC43Q96MW1 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
CCDC43Q96MW1 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC3.04□□□□□ -1.92
CCDC43Q96MW1 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC3.04□□□□□ -1.92
CCDC43Q96MW1 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC3.04□□□□□ -1.92
CCDC43Q96MW1 AL049838.1-201ENST00000563647 981 ntBASIC3.04□□□□□ -1.92
CCDC43Q96MW1 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC3.04□□□□□ -1.92
CCDC43Q96MW1 OR2AS2P-201ENST00000606902 342 ntBASIC3.04□□□□□ -1.92
CCDC43Q96MW1 AC007349.4-201ENST00000608114 532 ntBASIC3.04□□□□□ -1.92
CCDC43Q96MW1 AC072039.2-201ENST00000608883 439 ntBASIC3.04□□□□□ -1.92
CCDC43Q96MW1 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC3.04□□□□□ -1.92
CCDC43Q96MW1 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC3.04□□□□□ -1.92
CCDC43Q96MW1 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
CCDC43Q96MW1 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC3.04□□□□□ -1.92
CCDC43Q96MW1 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC3.03□□□□□ -1.92
CCDC43Q96MW1 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC3.03□□□□□ -1.92
CCDC43Q96MW1 GNGT1-201ENST00000248572 720 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 127.3 ms