Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 AC139769.1-204ENST00000472297 1931 ntBASIC5.36□□□□□ -1.55
NPAS3Q8IXF0 PATE4-201ENST00000457514 1983 ntAPPRIS P2 TSL 2 BASIC5.36□□□□□ -1.55
NPAS3Q8IXF0 PPARGC1A-201ENST00000264867 6318 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
NPAS3Q8IXF0 ZBTB44-210ENST00000530205 2179 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
NPAS3Q8IXF0 F9-201ENST00000218099 2780 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
NPAS3Q8IXF0 AC104793.1-201ENST00000508189 2840 ntTSL 2 BASIC5.36□□□□□ -1.55
NPAS3Q8IXF0 RAB3GAP1-207ENST00000539493 3161 ntTSL 5 BASIC5.36□□□□□ -1.55
NPAS3Q8IXF0 USP8-204ENST00000425032 3559 ntTSL 2 BASIC5.36□□□□□ -1.55
NPAS3Q8IXF0 UACA-211ENST00000560441 4723 ntAPPRIS ALT2 TSL 5 BASIC5.35□□□□□ -1.55
NPAS3Q8IXF0 ZNF658-201ENST00000612867 4160 ntAPPRIS P1 TSL 2 BASIC5.35□□□□□ -1.55
NPAS3Q8IXF0 CLDN12-203ENST00000394605 3488 ntAPPRIS P1 TSL 2 BASIC5.35□□□□□ -1.55
NPAS3Q8IXF0 DTNA-230ENST00000598334 3201 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
NPAS3Q8IXF0 NKAIN2-204ENST00000545433 3052 ntTSL 5 BASIC5.35□□□□□ -1.55
NPAS3Q8IXF0 CYP7A1-201ENST00000301645 2950 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
NPAS3Q8IXF0 ABCB5-201ENST00000258738 2906 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
NPAS3Q8IXF0 PTPRB-202ENST00000334414 12316 ntAPPRIS P4 TSL 1 (best) BASIC5.35□□□□□ -1.55
NPAS3Q8IXF0 MAX-203ENST00000341653 330 ntTSL 2 BASIC5.35□□□□□ -1.55
NPAS3Q8IXF0 Y_RNA.23-201ENST00000362496 106 ntBASIC5.35□□□□□ -1.55
NPAS3Q8IXF0 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
NPAS3Q8IXF0 Y_RNA.420-201ENST00000384043 110 ntBASIC5.35□□□□□ -1.55
NPAS3Q8IXF0 RNU6-1144P-201ENST00000384247 104 ntBASIC5.35□□□□□ -1.55
NPAS3Q8IXF0 AC092017.2-201ENST00000427600 362 ntBASIC5.35□□□□□ -1.55
NPAS3Q8IXF0 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
NPAS3Q8IXF0 AC005002.2-201ENST00000438228 269 ntBASIC5.35□□□□□ -1.55
NPAS3Q8IXF0 AC008264.1-201ENST00000447612 367 ntBASIC5.35□□□□□ -1.55
NPAS3Q8IXF0 Z99127.1-202ENST00000448686 526 ntTSL 2 BASIC5.35□□□□□ -1.55
NPAS3Q8IXF0 RPS27AP9-201ENST00000477681 438 ntBASIC5.35□□□□□ -1.55
NPAS3Q8IXF0 RN7SL244P-201ENST00000493405 297 ntBASIC5.35□□□□□ -1.55
NPAS3Q8IXF0 RNA5SP43-201ENST00000516559 110 ntBASIC5.35□□□□□ -1.55
NPAS3Q8IXF0 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC5.35□□□□□ -1.55
NPAS3Q8IXF0 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC5.35□□□□□ -1.55
NPAS3Q8IXF0 MIR4433B-201ENST00000581329 102 ntBASIC5.35□□□□□ -1.55
NPAS3Q8IXF0 BDH2P1-201ENST00000602288 736 ntBASIC5.35□□□□□ -1.55
NPAS3Q8IXF0 AC105254.2-201ENST00000603636 436 ntBASIC5.35□□□□□ -1.55
NPAS3Q8IXF0 MIR7703-201ENST00000620784 77 ntBASIC5.35□□□□□ -1.55
NPAS3Q8IXF0 Metazoa_SRP.93-201ENST00000622525 276 ntBASIC5.35□□□□□ -1.55
NPAS3Q8IXF0 AP000346.3-201ENST00000622821 210 ntBASIC5.35□□□□□ -1.55
NPAS3Q8IXF0 AC007998.5-201ENST00000622938 237 ntBASIC5.35□□□□□ -1.55
NPAS3Q8IXF0 CDH19-201ENST00000262150 6341 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
NPAS3Q8IXF0 LINC00598-206ENST00000615947 3541 ntTSL 4 BASIC5.35□□□□□ -1.55
NPAS3Q8IXF0 MAP2-205ENST00000392194 5303 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
NPAS3Q8IXF0 RSF1-204ENST00000480887 5318 ntAPPRIS ALT2 TSL 1 (best) BASIC5.35□□□□□ -1.55
NPAS3Q8IXF0 CPSF2-201ENST00000298875 13035 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
NPAS3Q8IXF0 NUP107-202ENST00000378905 2859 ntTSL 5 BASIC5.35□□□□□ -1.55
NPAS3Q8IXF0 SNX10-202ENST00000396376 2491 ntAPPRIS P2 TSL 1 (best) BASIC5.35□□□□□ -1.55
NPAS3Q8IXF0 BCLAF1-201ENST00000353331 7110 ntTSL 5 BASIC5.35□□□□□ -1.55
NPAS3Q8IXF0 ZNF181-203ENST00000459757 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC5.35□□□□□ -1.55
NPAS3Q8IXF0 CFL2-201ENST00000298159 6747 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
NPAS3Q8IXF0 RAD17P1-201ENST00000418130 2042 ntBASIC5.35□□□□□ -1.55
NPAS3Q8IXF0 MPDZ-212ENST00000538841 3186 ntTSL 2 BASIC5.34□□□□□ -1.55
NPAS3Q8IXF0 NRDE2-201ENST00000354366 14208 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
NPAS3Q8IXF0 CD226-201ENST00000280200 12319 ntAPPRIS P2 TSL 1 (best) BASIC5.34□□□□□ -1.55
NPAS3Q8IXF0 CKAP5-210ENST00000529230 7121 ntAPPRIS P1 TSL 5 BASIC5.34□□□□□ -1.55
NPAS3Q8IXF0 RAB30-212ENST00000533486 9929 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
NPAS3Q8IXF0 ZNF492-201ENST00000456783 4245 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
NPAS3Q8IXF0 SEC31A-204ENST00000355196 4104 ntAPPRIS P4 TSL 2 BASIC5.34□□□□□ -1.55
NPAS3Q8IXF0 AP005435.3-201ENST00000531260 3198 ntBASIC5.34□□□□□ -1.55
NPAS3Q8IXF0 MCM9-209ENST00000619706 4822 ntAPPRIS P1 TSL 5 BASIC5.34□□□□□ -1.55
NPAS3Q8IXF0 LMO3-201ENST00000261169 3810 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
NPAS3Q8IXF0 AC092681.1-201ENST00000297369 291 ntBASIC5.34□□□□□ -1.55
NPAS3Q8IXF0 Y_RNA.238-201ENST00000364441 102 ntBASIC5.34□□□□□ -1.55
NPAS3Q8IXF0 SNORA66-201ENST00000384792 133 ntBASIC5.34□□□□□ -1.55
NPAS3Q8IXF0 SNORA12.2-201ENST00000391040 156 ntBASIC5.34□□□□□ -1.55
NPAS3Q8IXF0 RNU2-15P-201ENST00000410692 191 ntBASIC5.34□□□□□ -1.55
NPAS3Q8IXF0 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC5.34□□□□□ -1.55
NPAS3Q8IXF0 AL133482.1-201ENST00000415988 498 ntBASIC5.34□□□□□ -1.55
NPAS3Q8IXF0 TTTY17A-201ENST00000416110 166 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
NPAS3Q8IXF0 TTTY17C-201ENST00000421387 166 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
NPAS3Q8IXF0 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC5.34□□□□□ -1.55
NPAS3Q8IXF0 AL358453.1-201ENST00000422522 250 ntBASIC5.34□□□□□ -1.55
NPAS3Q8IXF0 STXBP5-AS1-204ENST00000431143 644 ntTSL 3 BASIC5.34□□□□□ -1.55
NPAS3Q8IXF0 TTTY17B-201ENST00000441906 166 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
NPAS3Q8IXF0 AC112498.1-201ENST00000444401 332 ntBASIC5.34□□□□□ -1.55
NPAS3Q8IXF0 MTATP6P7-201ENST00000453315 681 ntBASIC5.34□□□□□ -1.55
NPAS3Q8IXF0 RNU7-107P-201ENST00000459121 61 ntBASIC5.34□□□□□ -1.55
NPAS3Q8IXF0 RPL21P41-201ENST00000459863 264 ntBASIC5.34□□□□□ -1.55
NPAS3Q8IXF0 RN7SL459P-201ENST00000481078 302 ntBASIC5.34□□□□□ -1.55
NPAS3Q8IXF0 VN1R105P-201ENST00000486595 910 ntBASIC5.34□□□□□ -1.55
NPAS3Q8IXF0 AC005726.1-201ENST00000494679 427 ntBASIC5.34□□□□□ -1.55
NPAS3Q8IXF0 AC138360.1-201ENST00000552332 386 ntTSL 3 BASIC5.34□□□□□ -1.55
NPAS3Q8IXF0 AL133393.1-201ENST00000603277 287 ntBASIC5.34□□□□□ -1.55
NPAS3Q8IXF0 AC008745.1-201ENST00000604064 271 ntBASIC5.34□□□□□ -1.55
NPAS3Q8IXF0 AC009318.2-201ENST00000610917 651 ntBASIC5.34□□□□□ -1.55
NPAS3Q8IXF0 AKAP6-212ENST00000557272 4601 ntTSL 5 BASIC5.34□□□□□ -1.55
NPAS3Q8IXF0 LINC02302-201ENST00000556405 2904 ntTSL 2 BASIC5.34□□□□□ -1.55
NPAS3Q8IXF0 PTPRD-202ENST00000356435 9472 ntAPPRIS P1 TSL 5 BASIC5.34□□□□□ -1.55
NPAS3Q8IXF0 ADGRL2-209ENST00000370727 5164 ntTSL 5 BASIC5.34□□□□□ -1.55
NPAS3Q8IXF0 BMPR1B-202ENST00000394931 1922 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
NPAS3Q8IXF0 NHSL2-204ENST00000631375 12593 ntTSL 5 BASIC5.34□□□□□ -1.55
NPAS3Q8IXF0 DTNA-227ENST00000597599 1869 ntAPPRIS ALT2 TSL 2 BASIC5.34□□□□□ -1.55
NPAS3Q8IXF0 CCNB3-201ENST00000276014 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.56
NPAS3Q8IXF0 FHL1-218ENST00000543669 2878 ntTSL 1 (best) BASIC5.34□□□□□ -1.56
NPAS3Q8IXF0 PINCR-201ENST00000440955 2228 ntTSL 2 BASIC5.33□□□□□ -1.56
NPAS3Q8IXF0 MKKS-202ENST00000399054 2663 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
NPAS3Q8IXF0 ABCC13-202ENST00000463099 3842 ntBASIC5.33□□□□□ -1.56
NPAS3Q8IXF0 DNM3OS-201ENST00000417354 4358 ntTSL 4 BASIC5.33□□□□□ -1.56
NPAS3Q8IXF0 RYR3-201ENST00000389232 15552 ntAPPRIS ALT2 TSL 5 BASIC5.33□□□□□ -1.56
NPAS3Q8IXF0 DYNC1I2-225ENST00000508530 2494 ntAPPRIS ALT1 TSL 1 (best) BASIC5.33□□□□□ -1.56
NPAS3Q8IXF0 SLC4A7-206ENST00000428386 7385 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
NPAS3Q8IXF0 RGS17-202ENST00000367225 7773 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 106.1 ms