Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
SF3A1Q15459 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.78□□□□□ -1.64
SF3A1Q15459 RNU1-132P-201ENST00000364300 164 ntBASIC4.78□□□□□ -1.64
SF3A1Q15459 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
SF3A1Q15459 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
SF3A1Q15459 AP000567.1-201ENST00000406413 156 ntBASIC4.78□□□□□ -1.64
SF3A1Q15459 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC4.78□□□□□ -1.64
SF3A1Q15459 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC4.78□□□□□ -1.64
SF3A1Q15459 RPL23AP46-201ENST00000438548 490 ntBASIC4.78□□□□□ -1.64
SF3A1Q15459 SNORA71B-202ENST00000439232 272 ntBASIC4.78□□□□□ -1.64
SF3A1Q15459 AC105398.1-201ENST00000446073 402 ntTSL 5 BASIC4.78□□□□□ -1.64
SF3A1Q15459 PPIAP15-201ENST00000479662 484 ntBASIC4.78□□□□□ -1.64
SF3A1Q15459 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC4.78□□□□□ -1.64
SF3A1Q15459 UTP23-205ENST00000520733 369 ntTSL 3 BASIC4.78□□□□□ -1.64
SF3A1Q15459 MTND4P7-201ENST00000523876 130 ntBASIC4.78□□□□□ -1.64
SF3A1Q15459 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC4.78□□□□□ -1.64
SF3A1Q15459 MDM2-233ENST00000545204 398 ntTSL 5 BASIC4.78□□□□□ -1.64
SF3A1Q15459 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC4.78□□□□□ -1.64
SF3A1Q15459 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC4.78□□□□□ -1.64
SF3A1Q15459 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC4.78□□□□□ -1.64
SF3A1Q15459 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
SF3A1Q15459 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC4.78□□□□□ -1.64
SF3A1Q15459 MIR5583-1-201ENST00000580941 59 ntBASIC4.78□□□□□ -1.64
SF3A1Q15459 AC008962.1-201ENST00000605729 304 ntBASIC4.78□□□□□ -1.64
SF3A1Q15459 UBE2Q2P6-201ENST00000612666 153 ntBASIC4.78□□□□□ -1.64
SF3A1Q15459 AC002076.2-201ENST00000617362 122 ntBASIC4.78□□□□□ -1.64
SF3A1Q15459 AC009033.1-201ENST00000624279 431 ntBASIC4.78□□□□□ -1.64
SF3A1Q15459 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC4.78□□□□□ -1.64
SF3A1Q15459 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
SF3A1Q15459 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
SF3A1Q15459 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC4.78□□□□□ -1.64
SF3A1Q15459 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
SF3A1Q15459 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
SF3A1Q15459 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC4.78□□□□□ -1.64
SF3A1Q15459 MGA-202ENST00000545763 11413 ntAPPRIS ALT2 TSL 5 BASIC4.78□□□□□ -1.64
SF3A1Q15459 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
SF3A1Q15459 C6orf10-207ENST00000533191 2170 ntAPPRIS ALT2 TSL 1 (best) BASIC4.77□□□□□ -1.65
SF3A1Q15459 RN7SKP227-201ENST00000364445 330 ntBASIC4.77□□□□□ -1.65
SF3A1Q15459 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
SF3A1Q15459 U3.22-201ENST00000391120 215 ntBASIC4.77□□□□□ -1.65
SF3A1Q15459 RNU6-876P-201ENST00000391295 104 ntBASIC4.77□□□□□ -1.65
SF3A1Q15459 RPS4XP3-201ENST00000398541 413 ntBASIC4.77□□□□□ -1.65
SF3A1Q15459 AL590704.1-201ENST00000402856 794 ntBASIC4.77□□□□□ -1.65
SF3A1Q15459 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC4.77□□□□□ -1.65
SF3A1Q15459 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC4.77□□□□□ -1.65
SF3A1Q15459 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC4.77□□□□□ -1.65
SF3A1Q15459 RSL24D1P6-201ENST00000426934 401 ntBASIC4.77□□□□□ -1.65
SF3A1Q15459 RPL36AP53-201ENST00000432891 316 ntBASIC4.77□□□□□ -1.65
SF3A1Q15459 KCTD9P3-201ENST00000434597 1169 ntBASIC4.77□□□□□ -1.65
SF3A1Q15459 CECR9-201ENST00000453421 199 ntBASIC4.77□□□□□ -1.65
SF3A1Q15459 RNU7-180P-201ENST00000459240 63 ntBASIC4.77□□□□□ -1.65
SF3A1Q15459 AC109327.1-201ENST00000471666 403 ntBASIC4.77□□□□□ -1.65
SF3A1Q15459 RPL38P4-201ENST00000502376 214 ntBASIC4.77□□□□□ -1.65
SF3A1Q15459 AC008958.1-201ENST00000511047 682 ntBASIC4.77□□□□□ -1.65
SF3A1Q15459 AC025465.4-201ENST00000513422 638 ntBASIC4.77□□□□□ -1.65
SF3A1Q15459 AL137161.1-201ENST00000532231 390 ntBASIC4.77□□□□□ -1.65
SF3A1Q15459 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC4.77□□□□□ -1.65
SF3A1Q15459 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC4.77□□□□□ -1.65
SF3A1Q15459 TVP23BP1-201ENST00000557500 617 ntBASIC4.77□□□□□ -1.65
SF3A1Q15459 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC4.77□□□□□ -1.65
SF3A1Q15459 AC074050.1-201ENST00000563247 211 ntBASIC4.77□□□□□ -1.65
SF3A1Q15459 AC060780.3-201ENST00000589464 80 ntBASIC4.77□□□□□ -1.65
SF3A1Q15459 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC4.77□□□□□ -1.65
SF3A1Q15459 MIR6830-201ENST00000636015 70 ntBASIC4.77□□□□□ -1.65
SF3A1Q15459 ZNF285B-201ENST00000561698 1767 ntBASIC4.77□□□□□ -1.65
SF3A1Q15459 AC093536.2-201ENST00000565257 1406 ntBASIC4.77□□□□□ -1.65
SF3A1Q15459 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
SF3A1Q15459 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
SF3A1Q15459 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC4.77□□□□□ -1.65
SF3A1Q15459 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
SF3A1Q15459 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
SF3A1Q15459 CASC19-280ENST00000642102 1351 ntBASIC4.77□□□□□ -1.65
SF3A1Q15459 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC4.77□□□□□ -1.65
SF3A1Q15459 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC4.77□□□□□ -1.65
SF3A1Q15459 GPBP1-204ENST00000506184 2857 ntAPPRIS P3 TSL 1 (best) BASIC4.76□□□□□ -1.65
SF3A1Q15459 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC4.76□□□□□ -1.65
SF3A1Q15459 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC4.76□□□□□ -1.65
SF3A1Q15459 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
SF3A1Q15459 Y_RNA.534-201ENST00000384599 112 ntBASIC4.76□□□□□ -1.65
SF3A1Q15459 MIR301A-201ENST00000385261 86 ntBASIC4.76□□□□□ -1.65
SF3A1Q15459 RPL17P36-201ENST00000420302 549 ntBASIC4.76□□□□□ -1.65
SF3A1Q15459 ZNF863P-201ENST00000426746 417 ntBASIC4.76□□□□□ -1.65
SF3A1Q15459 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC4.76□□□□□ -1.65
SF3A1Q15459 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC4.76□□□□□ -1.65
SF3A1Q15459 MTND3P16-201ENST00000452205 344 ntBASIC4.76□□□□□ -1.65
SF3A1Q15459 AC026355.2-201ENST00000456755 723 ntTSL 2 BASIC4.76□□□□□ -1.65
SF3A1Q15459 AC116533.1-201ENST00000459748 321 ntBASIC4.76□□□□□ -1.65
SF3A1Q15459 AC011276.1-201ENST00000469688 323 ntBASIC4.76□□□□□ -1.65
SF3A1Q15459 RPL7P19-201ENST00000469948 618 ntBASIC4.76□□□□□ -1.65
SF3A1Q15459 AL135752.1-201ENST00000479477 471 ntBASIC4.76□□□□□ -1.65
SF3A1Q15459 RPL21P99-201ENST00000480369 423 ntBASIC4.76□□□□□ -1.65
SF3A1Q15459 AF213884.1-201ENST00000488102 463 ntBASIC4.76□□□□□ -1.65
SF3A1Q15459 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC4.76□□□□□ -1.65
SF3A1Q15459 RNU6-358P-201ENST00000516564 75 ntBASIC4.76□□□□□ -1.65
SF3A1Q15459 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC4.76□□□□□ -1.65
SF3A1Q15459 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC4.76□□□□□ -1.65
SF3A1Q15459 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC4.76□□□□□ -1.65
SF3A1Q15459 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
SF3A1Q15459 AL139395.1-201ENST00000603662 160 ntBASIC4.76□□□□□ -1.65
SF3A1Q15459 AL590392.1-201ENST00000604960 446 ntBASIC4.76□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 106.9 ms