Protein–RNA interactions for Protein: Q12946

FOXF1, Forkhead box protein F1, humanhuman

Predictions only

Length 379 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXF1Q12946 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC1.8□□□□□ -2.12
FOXF1Q12946 AC004485.1-201ENST00000439839 527 ntTSL 5 BASIC1.8□□□□□ -2.12
FOXF1Q12946 PGBD4P3-201ENST00000440731 581 ntBASIC1.8□□□□□ -2.12
FOXF1Q12946 IPO7P1-201ENST00000442031 636 ntBASIC1.8□□□□□ -2.12
FOXF1Q12946 AC044784.2-201ENST00000447297 366 ntTSL 3 BASIC1.8□□□□□ -2.12
FOXF1Q12946 AC079776.3-201ENST00000450665 370 ntBASIC1.8□□□□□ -2.12
FOXF1Q12946 AC016751.2-201ENST00000453206 280 ntTSL 5 BASIC1.8□□□□□ -2.12
FOXF1Q12946 AC092757.1-201ENST00000467293 467 ntBASIC1.8□□□□□ -2.12
FOXF1Q12946 RPS15AP34-201ENST00000487776 387 ntBASIC1.8□□□□□ -2.12
FOXF1Q12946 RPL38P4-201ENST00000502376 214 ntBASIC1.8□□□□□ -2.12
FOXF1Q12946 AC096577.1-203ENST00000506386 541 ntTSL 3 BASIC1.8□□□□□ -2.12
FOXF1Q12946 AC092436.1-201ENST00000506450 503 ntBASIC1.8□□□□□ -2.12
FOXF1Q12946 RNU1-40P-201ENST00000516816 164 ntBASIC1.8□□□□□ -2.12
FOXF1Q12946 RNU1-97P-201ENST00000516872 164 ntBASIC1.8□□□□□ -2.12
FOXF1Q12946 FAM92A1P1-201ENST00000528023 890 ntBASIC1.8□□□□□ -2.12
FOXF1Q12946 NDUFS5P6-201ENST00000529136 295 ntBASIC1.8□□□□□ -2.12
FOXF1Q12946 KLRF1-203ENST00000537723 598 ntTSL 1 (best) BASIC1.8□□□□□ -2.12
FOXF1Q12946 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC1.8□□□□□ -2.12
FOXF1Q12946 CR383656.7-201ENST00000548164 174 ntBASIC1.8□□□□□ -2.12
FOXF1Q12946 HIGD1AP17-201ENST00000554576 276 ntBASIC1.8□□□□□ -2.12
FOXF1Q12946 AC025917.1-201ENST00000562062 612 ntTSL 3 BASIC1.8□□□□□ -2.12
FOXF1Q12946 AP005057.1-201ENST00000583827 574 ntTSL 4 BASIC1.8□□□□□ -2.12
FOXF1Q12946 SNRPGP19-201ENST00000603826 189 ntBASIC1.8□□□□□ -2.12
FOXF1Q12946 AL158211.2-201ENST00000607282 395 ntBASIC1.8□□□□□ -2.12
FOXF1Q12946 AC007527.2-201ENST00000621825 546 ntTSL 5 BASIC1.8□□□□□ -2.12
FOXF1Q12946 AC004009.2-201ENST00000623016 728 ntBASIC1.8□□□□□ -2.12
FOXF1Q12946 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC1.8□□□□□ -2.12
FOXF1Q12946 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC1.8□□□□□ -2.12
FOXF1Q12946 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC1.8□□□□□ -2.12
FOXF1Q12946 AC092881.1-201ENST00000638218 2733 ntBASIC1.79□□□□□ -2.12
FOXF1Q12946 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC1.79□□□□□ -2.12
FOXF1Q12946 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC1.79□□□□□ -2.12
FOXF1Q12946 OR56A5-201ENST00000340110 738 ntBASIC1.79□□□□□ -2.12
FOXF1Q12946 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC1.79□□□□□ -2.12
FOXF1Q12946 AL079342.1-201ENST00000401460 267 ntBASIC1.79□□□□□ -2.12
FOXF1Q12946 AL356131.1-201ENST00000405826 414 ntBASIC1.79□□□□□ -2.12
FOXF1Q12946 GSTA9P-201ENST00000406231 611 ntBASIC1.79□□□□□ -2.12
FOXF1Q12946 RNU4-26P-201ENST00000410270 107 ntBASIC1.79□□□□□ -2.12
FOXF1Q12946 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC1.79□□□□□ -2.12
FOXF1Q12946 BTF3P8-201ENST00000414577 526 ntBASIC1.79□□□□□ -2.12
FOXF1Q12946 LINC01646-201ENST00000420522 682 ntTSL 3 BASIC1.79□□□□□ -2.12
FOXF1Q12946 OOSP1P1-201ENST00000423265 274 ntBASIC1.79□□□□□ -2.12
FOXF1Q12946 AC019178.2-201ENST00000423595 505 ntBASIC1.79□□□□□ -2.12
FOXF1Q12946 SRIP2-201ENST00000428470 166 ntBASIC1.79□□□□□ -2.12
FOXF1Q12946 SEPT7P5-201ENST00000434048 306 ntBASIC1.79□□□□□ -2.12
FOXF1Q12946 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC1.79□□□□□ -2.12
FOXF1Q12946 RAC1P7-201ENST00000445367 377 ntBASIC1.79□□□□□ -2.12
FOXF1Q12946 RPL39P6-201ENST00000448289 150 ntBASIC1.79□□□□□ -2.12
FOXF1Q12946 TMEM212-IT1-201ENST00000456146 470 ntTSL 3 BASIC1.79□□□□□ -2.12
FOXF1Q12946 RNU6-420P-201ENST00000458780 107 ntBASIC1.79□□□□□ -2.12
FOXF1Q12946 AL049714.1-201ENST00000466686 347 ntBASIC1.79□□□□□ -2.12
FOXF1Q12946 RPS15AP17-201ENST00000470598 390 ntBASIC1.79□□□□□ -2.12
FOXF1Q12946 RN7SL429P-201ENST00000479090 223 ntBASIC1.79□□□□□ -2.12
FOXF1Q12946 RN7SL489P-201ENST00000486185 223 ntBASIC1.79□□□□□ -2.12
FOXF1Q12946 RN7SL327P-201ENST00000488659 223 ntBASIC1.79□□□□□ -2.12
FOXF1Q12946 AC090453.1-201ENST00000495560 436 ntBASIC1.79□□□□□ -2.12
FOXF1Q12946 AC008427.1-201ENST00000503102 655 ntBASIC1.79□□□□□ -2.12
FOXF1Q12946 AC114981.1-201ENST00000503897 678 ntBASIC1.79□□□□□ -2.12
FOXF1Q12946 LINC02198-201ENST00000504280 810 ntTSL 3 BASIC1.79□□□□□ -2.12
FOXF1Q12946 AC016550.1-201ENST00000505348 785 ntBASIC1.79□□□□□ -2.12
FOXF1Q12946 AC113155.1-201ENST00000511141 769 ntBASIC1.79□□□□□ -2.12
FOXF1Q12946 AC112178.1-201ENST00000511165 676 ntTSL 3 BASIC1.79□□□□□ -2.12
FOXF1Q12946 AC022483.1-201ENST00000514020 567 ntBASIC1.79□□□□□ -2.12
FOXF1Q12946 HSPE1P18-201ENST00000517602 280 ntBASIC1.79□□□□□ -2.12
FOXF1Q12946 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC1.79□□□□□ -2.12
FOXF1Q12946 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC1.79□□□□□ -2.12
FOXF1Q12946 COX6CP5-201ENST00000527162 228 ntBASIC1.79□□□□□ -2.12
FOXF1Q12946 LINC02378-201ENST00000540399 1003 ntTSL 5 BASIC1.79□□□□□ -2.12
FOXF1Q12946 MRPL42-203ENST00000547098 701 ntTSL 3 BASIC1.79□□□□□ -2.12
FOXF1Q12946 AC087311.2-201ENST00000549660 320 ntTSL 4 BASIC1.79□□□□□ -2.12
FOXF1Q12946 LINC02562-201ENST00000561705 785 ntTSL 2 BASIC1.79□□□□□ -2.12
FOXF1Q12946 AC135628.1-201ENST00000568867 534 ntBASIC1.79□□□□□ -2.12
FOXF1Q12946 AC138915.2-201ENST00000569776 97 ntBASIC1.79□□□□□ -2.12
FOXF1Q12946 RPS3AP23-202ENST00000574601 686 ntBASIC1.79□□□□□ -2.12
FOXF1Q12946 MIR5089-201ENST00000580047 84 ntBASIC1.79□□□□□ -2.12
FOXF1Q12946 AC015688.2-201ENST00000584523 262 ntBASIC1.79□□□□□ -2.12
FOXF1Q12946 AP005230.1-201ENST00000585072 675 ntTSL 5 BASIC1.79□□□□□ -2.12
FOXF1Q12946 AC069304.2-201ENST00000605154 435 ntBASIC1.79□□□□□ -2.12
FOXF1Q12946 AC093673.2-201ENST00000609674 331 ntBASIC1.79□□□□□ -2.12
FOXF1Q12946 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC1.79□□□□□ -2.12
FOXF1Q12946 RN7SL853P-201ENST00000617250 223 ntBASIC1.79□□□□□ -2.12
FOXF1Q12946 AL596245.1-201ENST00000618994 362 ntBASIC1.79□□□□□ -2.12
FOXF1Q12946 AC010872.1-201ENST00000624225 675 ntBASIC1.79□□□□□ -2.12
FOXF1Q12946 AC120349.2-201ENST00000625002 298 ntBASIC1.79□□□□□ -2.12
FOXF1Q12946 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC1.79□□□□□ -2.12
FOXF1Q12946 SDAD1P2-201ENST00000441308 2028 ntBASIC1.79□□□□□ -2.12
FOXF1Q12946 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC1.79□□□□□ -2.12
FOXF1Q12946 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC1.79□□□□□ -2.12
FOXF1Q12946 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC1.79□□□□□ -2.12
FOXF1Q12946 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC1.79□□□□□ -2.12
FOXF1Q12946 AC131280.1-202ENST00000624067 4211 ntBASIC1.78□□□□□ -2.12
FOXF1Q12946 AP005901.5-201ENST00000545779 1796 ntBASIC1.78□□□□□ -2.12
FOXF1Q12946 AC005539.1-201ENST00000443768 1479 ntBASIC1.78□□□□□ -2.12
FOXF1Q12946 MUC15-204ENST00000527569 1386 ntTSL 1 (best) BASIC1.78□□□□□ -2.12
FOXF1Q12946 SNRPEP3-201ENST00000338402 276 ntBASIC1.78□□□□□ -2.12
FOXF1Q12946 OR6C75-201ENST00000343399 939 ntAPPRIS P1 BASIC1.78□□□□□ -2.12
FOXF1Q12946 RNU4-51P-201ENST00000364206 140 ntBASIC1.78□□□□□ -2.12
FOXF1Q12946 TXNDC8-202ENST00000374510 455 ntAPPRIS P2 TSL 1 (best) BASIC1.78□□□□□ -2.12
FOXF1Q12946 RNA5SP354-201ENST00000391247 136 ntBASIC1.78□□□□□ -2.12
FOXF1Q12946 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC1.78□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 89.3 ms