Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC3.6□□□□□ -1.83
HDAC4P56524 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.6□□□□□ -1.83
HDAC4P56524 RNY4P16-201ENST00000364768 94 ntBASIC3.6□□□□□ -1.83
HDAC4P56524 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
HDAC4P56524 SNORD17-201ENST00000390930 237 ntBASIC3.6□□□□□ -1.83
HDAC4P56524 AL136372.1-201ENST00000403060 228 ntBASIC3.6□□□□□ -1.83
HDAC4P56524 MRPL42P2-201ENST00000403169 426 ntBASIC3.6□□□□□ -1.83
HDAC4P56524 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC3.6□□□□□ -1.83
HDAC4P56524 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC3.6□□□□□ -1.83
HDAC4P56524 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC3.6□□□□□ -1.83
HDAC4P56524 ISCA1P6-201ENST00000427740 390 ntBASIC3.6□□□□□ -1.83
HDAC4P56524 AL356277.3-201ENST00000432484 618 ntTSL 3 BASIC3.6□□□□□ -1.83
HDAC4P56524 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC3.6□□□□□ -1.83
HDAC4P56524 AC073063.1-201ENST00000434352 607 ntBASIC3.6□□□□□ -1.83
HDAC4P56524 USP9YP28-201ENST00000435142 589 ntBASIC3.6□□□□□ -1.83
HDAC4P56524 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC3.6□□□□□ -1.83
HDAC4P56524 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC3.6□□□□□ -1.83
HDAC4P56524 LINC01069-201ENST00000452933 546 ntTSL 5 BASIC3.6□□□□□ -1.83
HDAC4P56524 RPS4XP2-201ENST00000458402 793 ntBASIC3.6□□□□□ -1.83
HDAC4P56524 RNU7-59P-201ENST00000459101 61 ntBASIC3.6□□□□□ -1.83
HDAC4P56524 AC108751.4-201ENST00000462931 1001 ntTSL 2 BASIC3.6□□□□□ -1.83
HDAC4P56524 PLS1-AS1-201ENST00000485338 346 ntTSL 3 BASIC3.6□□□□□ -1.83
HDAC4P56524 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC3.6□□□□□ -1.83
HDAC4P56524 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC3.6□□□□□ -1.83
HDAC4P56524 NDUFB9P3-201ENST00000521269 501 ntBASIC3.6□□□□□ -1.83
HDAC4P56524 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC3.6□□□□□ -1.83
HDAC4P56524 OR5B10P-201ENST00000532869 642 ntBASIC3.6□□□□□ -1.83
HDAC4P56524 AC016957.1-201ENST00000534895 309 ntBASIC3.6□□□□□ -1.83
HDAC4P56524 NACA-211ENST00000548563 827 ntTSL 5 BASIC3.6□□□□□ -1.83
HDAC4P56524 AL163153.1-201ENST00000554223 283 ntBASIC3.6□□□□□ -1.83
HDAC4P56524 TGIF1P1-201ENST00000558095 802 ntBASIC3.6□□□□□ -1.83
HDAC4P56524 MIR3146-201ENST00000580367 79 ntBASIC3.6□□□□□ -1.83
HDAC4P56524 AC011471.1-201ENST00000585766 187 ntBASIC3.6□□□□□ -1.83
HDAC4P56524 AC106900.2-201ENST00000604994 317 ntBASIC3.6□□□□□ -1.83
HDAC4P56524 DPY19L1-208ENST00000612226 607 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
HDAC4P56524 TFG-209ENST00000615993 1244 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
HDAC4P56524 AC136475.10-201ENST00000620253 385 ntBASIC3.6□□□□□ -1.83
HDAC4P56524 MIR4275-201ENST00000636486 87 ntBASIC3.6□□□□□ -1.83
HDAC4P56524 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
HDAC4P56524 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.59□□□□□ -1.83
HDAC4P56524 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.59□□□□□ -1.83
HDAC4P56524 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC3.59□□□□□ -1.83
HDAC4P56524 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC3.59□□□□□ -1.83
HDAC4P56524 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
HDAC4P56524 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC3.59□□□□□ -1.83
HDAC4P56524 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC3.59□□□□□ -1.83
HDAC4P56524 RNU6-754P-201ENST00000391166 107 ntBASIC3.59□□□□□ -1.83
HDAC4P56524 RPL23AP32-201ENST00000395315 459 ntBASIC3.59□□□□□ -1.83
HDAC4P56524 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC3.59□□□□□ -1.83
HDAC4P56524 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC3.59□□□□□ -1.83
HDAC4P56524 MTND3P17-201ENST00000416968 344 ntBASIC3.59□□□□□ -1.83
HDAC4P56524 AL160272.1-201ENST00000421509 521 ntTSL 3 BASIC3.59□□□□□ -1.83
HDAC4P56524 AC019097.1-201ENST00000424783 735 ntBASIC3.59□□□□□ -1.83
HDAC4P56524 AP000907.1-201ENST00000428428 510 ntBASIC3.59□□□□□ -1.83
HDAC4P56524 C8orf59P1-201ENST00000429930 303 ntBASIC3.59□□□□□ -1.83
HDAC4P56524 RPL23AP69-201ENST00000431134 458 ntBASIC3.59□□□□□ -1.83
HDAC4P56524 AC090774.1-201ENST00000435925 246 ntBASIC3.59□□□□□ -1.83
HDAC4P56524 TIMM9P1-201ENST00000436122 256 ntBASIC3.59□□□□□ -1.83
HDAC4P56524 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC3.59□□□□□ -1.83
HDAC4P56524 HMGN2P20-201ENST00000437531 273 ntBASIC3.59□□□□□ -1.83
HDAC4P56524 AC073614.1-201ENST00000438690 650 ntBASIC3.59□□□□□ -1.83
HDAC4P56524 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC3.59□□□□□ -1.83
HDAC4P56524 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC3.59□□□□□ -1.83
HDAC4P56524 OFD1P4Y-201ENST00000455273 1179 ntBASIC3.59□□□□□ -1.83
HDAC4P56524 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC3.59□□□□□ -1.83
HDAC4P56524 RPS27P29-201ENST00000463110 252 ntBASIC3.59□□□□□ -1.83
HDAC4P56524 RPS27AP1-201ENST00000475545 471 ntBASIC3.59□□□□□ -1.83
HDAC4P56524 AC025518.1-201ENST00000479856 347 ntBASIC3.59□□□□□ -1.83
HDAC4P56524 RPS4XP22-201ENST00000480755 780 ntBASIC3.59□□□□□ -1.83
HDAC4P56524 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC3.59□□□□□ -1.83
HDAC4P56524 AC135721.1-201ENST00000497954 479 ntBASIC3.59□□□□□ -1.83
HDAC4P56524 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC3.59□□□□□ -1.83
HDAC4P56524 DEFB108D-201ENST00000527787 222 ntBASIC3.59□□□□□ -1.83
HDAC4P56524 A2ML1-AS1-201ENST00000537288 452 ntTSL 3 BASIC3.59□□□□□ -1.83
HDAC4P56524 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC3.59□□□□□ -1.83
HDAC4P56524 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC3.59□□□□□ -1.83
HDAC4P56524 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC3.59□□□□□ -1.83
HDAC4P56524 AC125611.2-201ENST00000551907 647 ntBASIC3.59□□□□□ -1.83
HDAC4P56524 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC3.59□□□□□ -1.83
HDAC4P56524 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC3.59□□□□□ -1.83
HDAC4P56524 AL133153.1-201ENST00000557756 303 ntBASIC3.59□□□□□ -1.83
HDAC4P56524 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC3.59□□□□□ -1.83
HDAC4P56524 DUXAP4-201ENST00000603046 613 ntBASIC3.59□□□□□ -1.83
HDAC4P56524 AC103710.1-201ENST00000610003 901 ntBASIC3.59□□□□□ -1.83
HDAC4P56524 AC068880.5-201ENST00000624331 290 ntBASIC3.59□□□□□ -1.83
HDAC4P56524 AC019226.1-201ENST00000625666 515 ntBASIC3.59□□□□□ -1.83
HDAC4P56524 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC3.59□□□□□ -1.83
HDAC4P56524 DDX10P1-201ENST00000448545 1933 ntBASIC3.59□□□□□ -1.83
HDAC4P56524 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC3.59□□□□□ -1.83
HDAC4P56524 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC3.59□□□□□ -1.83
HDAC4P56524 AL513302.2-201ENST00000562313 1842 ntBASIC3.58□□□□□ -1.84
HDAC4P56524 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC3.58□□□□□ -1.84
HDAC4P56524 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
HDAC4P56524 RNU4-35P-201ENST00000362588 141 ntBASIC3.58□□□□□ -1.84
HDAC4P56524 RNU6-223P-201ENST00000362830 107 ntBASIC3.58□□□□□ -1.84
HDAC4P56524 RNU5E-8P-201ENST00000363502 116 ntBASIC3.58□□□□□ -1.84
HDAC4P56524 AL109755.1-201ENST00000401791 649 ntBASIC3.58□□□□□ -1.84
HDAC4P56524 RNU2-8P-201ENST00000410727 190 ntBASIC3.58□□□□□ -1.84
HDAC4P56524 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC3.58□□□□□ -1.84
HDAC4P56524 AC007283.2-201ENST00000424739 197 ntBASIC3.58□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 106.7 ms