Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 RNU6-22P-201ENST00000384355 107 ntBASIC5.03□□□□□ -1.6
MSX1P28360 RNU6-146P-201ENST00000384602 108 ntBASIC5.03□□□□□ -1.6
MSX1P28360 U3.39-201ENST00000408569 239 ntBASIC5.03□□□□□ -1.6
MSX1P28360 RNU6-735P-201ENST00000410612 107 ntBASIC5.03□□□□□ -1.6
MSX1P28360 RNU2-61P-201ENST00000411069 191 ntBASIC5.03□□□□□ -1.6
MSX1P28360 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC5.03□□□□□ -1.6
MSX1P28360 AL139148.1-201ENST00000427122 680 ntBASIC5.03□□□□□ -1.6
MSX1P28360 AL358472.1-201ENST00000431295 329 ntBASIC5.03□□□□□ -1.6
MSX1P28360 AC138761.5-201ENST00000433967 325 ntBASIC5.03□□□□□ -1.6
MSX1P28360 RPS20P1-201ENST00000434853 354 ntBASIC5.03□□□□□ -1.6
MSX1P28360 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC5.03□□□□□ -1.6
MSX1P28360 AL591623.2-201ENST00000449978 222 ntBASIC5.03□□□□□ -1.6
MSX1P28360 RN7SL172P-201ENST00000460535 303 ntBASIC5.03□□□□□ -1.6
MSX1P28360 AC010326.1-201ENST00000462726 602 ntBASIC5.03□□□□□ -1.6
MSX1P28360 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC5.03□□□□□ -1.6
MSX1P28360 RPL23AP65-201ENST00000475608 468 ntBASIC5.03□□□□□ -1.6
MSX1P28360 AC004889.1-208ENST00000489077 423 ntTSL 3 BASIC5.03□□□□□ -1.6
MSX1P28360 AC008517.1-201ENST00000502383 585 ntTSL 4 BASIC5.03□□□□□ -1.6
MSX1P28360 RNU6-941P-201ENST00000516346 108 ntBASIC5.03□□□□□ -1.6
MSX1P28360 RNU6-479P-201ENST00000516348 105 ntBASIC5.03□□□□□ -1.6
MSX1P28360 RNU6-62P-201ENST00000516526 102 ntBASIC5.03□□□□□ -1.6
MSX1P28360 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC5.03□□□□□ -1.6
MSX1P28360 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC5.03□□□□□ -1.6
MSX1P28360 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC5.03□□□□□ -1.6
MSX1P28360 AC039056.1-201ENST00000552704 467 ntTSL 3 BASIC5.03□□□□□ -1.6
MSX1P28360 SRD5A3-AS1-204ENST00000592823 542 ntTSL 5 BASIC5.03□□□□□ -1.6
MSX1P28360 RPSAP73-201ENST00000614820 330 ntBASIC5.03□□□□□ -1.6
MSX1P28360 AL161629.2-201ENST00000615347 275 ntBASIC5.03□□□□□ -1.6
MSX1P28360 RASSF6-204ENST00000395777 2735 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
MSX1P28360 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
MSX1P28360 UGT2A1-205ENST00000512704 2519 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
MSX1P28360 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC5.03□□□□□ -1.6
MSX1P28360 SEC31A-204ENST00000355196 4104 ntAPPRIS P4 TSL 2 BASIC5.03□□□□□ -1.6
MSX1P28360 OR4E1-202ENST00000641792 3742 ntAPPRIS P5 BASIC5.03□□□□□ -1.6
MSX1P28360 TRIM69-201ENST00000329464 1901 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
MSX1P28360 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
MSX1P28360 CENPI-202ENST00000372927 3262 ntAPPRIS P3 TSL 5 BASIC5.03□□□□□ -1.6
MSX1P28360 STON1-201ENST00000404752 5511 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
MSX1P28360 ADGRL3-217ENST00000514591 6297 ntAPPRIS P2 TSL 5 BASIC5.02□□□□□ -1.61
MSX1P28360 ASXL3-201ENST00000269197 11399 ntAPPRIS P2 TSL 5 BASIC5.02□□□□□ -1.61
MSX1P28360 AC008695.1-201ENST00000514667 6393 ntAPPRIS P1 TSL 2 BASIC5.02□□□□□ -1.61
MSX1P28360 TRPC4-202ENST00000355779 2784 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
MSX1P28360 FILIP1-203ENST00000393004 7807 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
MSX1P28360 GABRA1-215ENST00000636573 2262 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.61
MSX1P28360 LINC01289-201ENST00000519550 3712 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
MSX1P28360 DECR1-215ENST00000522161 1766 ntAPPRIS ALT2 TSL 2 BASIC5.02□□□□□ -1.61
MSX1P28360 NPSR1-AS1-202ENST00000419766 4821 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
MSX1P28360 RN7SKP185-201ENST00000362813 326 ntBASIC5.02□□□□□ -1.61
MSX1P28360 Y_RNA.123-201ENST00000363338 102 ntBASIC5.02□□□□□ -1.61
MSX1P28360 RNA5SP507-201ENST00000363603 121 ntBASIC5.02□□□□□ -1.61
MSX1P28360 AL645927.1-201ENST00000396783 406 ntBASIC5.02□□□□□ -1.61
MSX1P28360 RNU6-651P-201ENST00000411040 105 ntBASIC5.02□□□□□ -1.61
MSX1P28360 Y_RNA.623-201ENST00000411128 95 ntBASIC5.02□□□□□ -1.61
MSX1P28360 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC5.02□□□□□ -1.61
MSX1P28360 BMS1P22-201ENST00000414726 313 ntBASIC5.02□□□□□ -1.61
MSX1P28360 TRAPPC2P10-201ENST00000415662 323 ntBASIC5.02□□□□□ -1.61
MSX1P28360 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC5.02□□□□□ -1.61
MSX1P28360 AC073465.2-201ENST00000440938 498 ntBASIC5.02□□□□□ -1.61
MSX1P28360 ZIC4-AS1-201ENST00000462168 268 ntTSL 5 BASIC5.02□□□□□ -1.61
MSX1P28360 RN7SL51P-201ENST00000468230 285 ntBASIC5.02□□□□□ -1.61
MSX1P28360 RPS26P21-201ENST00000475397 348 ntBASIC5.02□□□□□ -1.61
MSX1P28360 RN7SKP234-201ENST00000517173 224 ntBASIC5.02□□□□□ -1.61
MSX1P28360 AC084851.1-201ENST00000529105 249 ntBASIC5.02□□□□□ -1.61
MSX1P28360 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC5.02□□□□□ -1.61
MSX1P28360 AC023575.1-201ENST00000580510 358 ntBASIC5.02□□□□□ -1.61
MSX1P28360 AC008121.1-201ENST00000603244 268 ntBASIC5.02□□□□□ -1.61
MSX1P28360 AL139395.1-201ENST00000603662 160 ntBASIC5.02□□□□□ -1.61
MSX1P28360 GVQW2-203ENST00000641401 327 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
MSX1P28360 PDE4B-201ENST00000329654 3998 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
MSX1P28360 RGPD2-203ENST00000638730 5306 ntAPPRIS ALT2 TSL 5 BASIC5.02□□□□□ -1.61
MSX1P28360 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC5.02□□□□□ -1.61
MSX1P28360 AK9-204ENST00000424296 6326 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.61
MSX1P28360 ZNF681-201ENST00000402377 6497 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
MSX1P28360 ATF7IP-214ENST00000540793 4142 ntAPPRIS P3 TSL 1 (best) BASIC5.02□□□□□ -1.61
MSX1P28360 CXCL9-201ENST00000264888 2740 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
MSX1P28360 EPHA4-202ENST00000409854 3454 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
MSX1P28360 AC104260.2-201ENST00000623551 3497 ntBASIC5.02□□□□□ -1.61
MSX1P28360 LINC01277-201ENST00000419957 2398 ntTSL 2 BASIC5.01□□□□□ -1.61
MSX1P28360 TGIF1-208ENST00000472042 2214 ntTSL 2 BASIC5.01□□□□□ -1.61
MSX1P28360 ZNF571-201ENST00000328550 4113 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
MSX1P28360 MAPK10-370ENST00000641943 4117 ntAPPRIS P2 BASIC5.01□□□□□ -1.61
MSX1P28360 FGF1-214ENST00000612258 3805 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
MSX1P28360 BDNF-AS-202ENST00000499568 2039 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
MSX1P28360 AKAP6-212ENST00000557272 4601 ntTSL 5 BASIC5.01□□□□□ -1.61
MSX1P28360 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC5.01□□□□□ -1.61
MSX1P28360 LINC01553-203ENST00000521074 4329 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
MSX1P28360 COPB2-205ENST00000507777 3034 ntTSL 2 BASIC5.01□□□□□ -1.61
MSX1P28360 ZNF678-201ENST00000343776 8556 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
MSX1P28360 RNA5SP453-201ENST00000362503 119 ntBASIC5.01□□□□□ -1.61
MSX1P28360 RNU5A-1-201ENST00000362698 116 ntBASIC5.01□□□□□ -1.61
MSX1P28360 RNU6-1167P-201ENST00000363227 94 ntBASIC5.01□□□□□ -1.61
MSX1P28360 SNORD14B-201ENST00000364533 90 ntBASIC5.01□□□□□ -1.61
MSX1P28360 Y_RNA.275-201ENST00000364726 110 ntBASIC5.01□□□□□ -1.61
MSX1P28360 RN7SKP216-201ENST00000411050 312 ntBASIC5.01□□□□□ -1.61
MSX1P28360 RNU6-1135P-201ENST00000411083 103 ntBASIC5.01□□□□□ -1.61
MSX1P28360 RPL23AP27-201ENST00000415161 451 ntBASIC5.01□□□□□ -1.61
MSX1P28360 MTATP6P4-201ENST00000427725 675 ntBASIC5.01□□□□□ -1.61
MSX1P28360 TOMM20P4-201ENST00000427861 435 ntBASIC5.01□□□□□ -1.61
MSX1P28360 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC5.01□□□□□ -1.61
MSX1P28360 AL161629.1-201ENST00000446201 457 ntTSL 3 BASIC5.01□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 101.6 ms