Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC3.44□□□□□ -1.86
BDNFP23560 RPL22P17-201ENST00000438729 315 ntBASIC3.44□□□□□ -1.86
BDNFP23560 AC115115.1-201ENST00000449927 248 ntBASIC3.44□□□□□ -1.86
BDNFP23560 RNU6-953P-201ENST00000459154 107 ntBASIC3.44□□□□□ -1.86
BDNFP23560 C1orf112-206ENST00000472795 925 ntAPPRIS ALT2 TSL 2 BASIC3.44□□□□□ -1.86
BDNFP23560 LINC00888-204ENST00000487386 421 ntBASIC3.44□□□□□ -1.86
BDNFP23560 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC3.44□□□□□ -1.86
BDNFP23560 SNORA74D-201ENST00000516404 141 ntBASIC3.44□□□□□ -1.86
BDNFP23560 RNU6-201P-201ENST00000517100 61 ntBASIC3.44□□□□□ -1.86
BDNFP23560 RNA5SP165-201ENST00000517142 115 ntBASIC3.44□□□□□ -1.86
BDNFP23560 CTHRC1-204ENST00000520880 560 ntTSL 4 BASIC3.44□□□□□ -1.86
BDNFP23560 C14orf105-204ENST00000526336 598 ntTSL 4 BASIC3.44□□□□□ -1.86
BDNFP23560 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC3.44□□□□□ -1.86
BDNFP23560 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC3.44□□□□□ -1.86
BDNFP23560 MIR4293-201ENST00000584305 78 ntBASIC3.44□□□□□ -1.86
BDNFP23560 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC3.44□□□□□ -1.86
BDNFP23560 AC012493.2-201ENST00000595083 291 ntBASIC3.44□□□□□ -1.86
BDNFP23560 MIR8057-201ENST00000620957 69 ntBASIC3.44□□□□□ -1.86
BDNFP23560 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC3.44□□□□□ -1.86
BDNFP23560 AL137003.2-201ENST00000606924 2538 ntBASIC3.44□□□□□ -1.86
BDNFP23560 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
BDNFP23560 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
BDNFP23560 AK9-203ENST00000368948 2478 ntTSL 5 BASIC3.43□□□□□ -1.86
BDNFP23560 UBE2L2-201ENST00000254302 429 ntBASIC3.43□□□□□ -1.86
BDNFP23560 PTPRC-202ENST00000367364 1017 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
BDNFP23560 AL513475.1-201ENST00000406602 315 ntBASIC3.43□□□□□ -1.86
BDNFP23560 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC3.43□□□□□ -1.86
BDNFP23560 DNAJA1P2-201ENST00000421360 1197 ntBASIC3.43□□□□□ -1.86
BDNFP23560 AL391069.1-201ENST00000422153 358 ntTSL 3 BASIC3.43□□□□□ -1.86
BDNFP23560 BPY2DP-201ENST00000422208 265 ntBASIC3.43□□□□□ -1.86
BDNFP23560 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC3.43□□□□□ -1.86
BDNFP23560 RAC1P6-201ENST00000423911 575 ntBASIC3.43□□□□□ -1.86
BDNFP23560 FCF1P1-201ENST00000432690 571 ntBASIC3.43□□□□□ -1.86
BDNFP23560 RPS15AP7-201ENST00000439294 405 ntBASIC3.43□□□□□ -1.86
BDNFP23560 AC093156.1-201ENST00000440382 670 ntBASIC3.43□□□□□ -1.86
BDNFP23560 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC3.43□□□□□ -1.86
BDNFP23560 CECR9-201ENST00000453421 199 ntBASIC3.43□□□□□ -1.86
BDNFP23560 AL023581.2-201ENST00000454588 552 ntTSL 2 BASIC3.43□□□□□ -1.86
BDNFP23560 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC3.43□□□□□ -1.86
BDNFP23560 RPL23AP70-201ENST00000483361 460 ntBASIC3.43□□□□□ -1.86
BDNFP23560 RNU6ATAC13P-201ENST00000516152 131 ntBASIC3.43□□□□□ -1.86
BDNFP23560 NAP1L1P1-201ENST00000524793 1063 ntBASIC3.43□□□□□ -1.86
BDNFP23560 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC3.43□□□□□ -1.86
BDNFP23560 PCMTD1P2-201ENST00000565017 355 ntBASIC3.43□□□□□ -1.86
BDNFP23560 AC091544.5-202ENST00000568297 374 ntTSL 3 BASIC3.43□□□□□ -1.86
BDNFP23560 AC007151.1-201ENST00000572774 483 ntBASIC3.43□□□□□ -1.86
BDNFP23560 IGKV1OR2-6-201ENST00000603485 277 ntBASIC3.43□□□□□ -1.86
BDNFP23560 DPPA3P3-201ENST00000603842 430 ntBASIC3.43□□□□□ -1.86
BDNFP23560 RPL23AP88-201ENST00000605759 454 ntBASIC3.43□□□□□ -1.86
BDNFP23560 AC011939.3-201ENST00000613686 466 ntBASIC3.43□□□□□ -1.86
BDNFP23560 AL354810.1-201ENST00000618134 635 ntTSL 3 BASIC3.43□□□□□ -1.86
BDNFP23560 AC026422.1-201ENST00000623961 452 ntBASIC3.43□□□□□ -1.86
BDNFP23560 AL136313.1-201ENST00000624804 202 ntBASIC3.43□□□□□ -1.86
BDNFP23560 AC010329.5-201ENST00000623497 2174 ntBASIC3.43□□□□□ -1.86
BDNFP23560 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.43□□□□□ -1.86
BDNFP23560 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC3.43□□□□□ -1.86
BDNFP23560 PWAR6-201ENST00000552334 4618 ntBASIC3.42□□□□□ -1.86
BDNFP23560 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
BDNFP23560 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC3.42□□□□□ -1.86
BDNFP23560 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC3.42□□□□□ -1.86
BDNFP23560 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC3.42□□□□□ -1.86
BDNFP23560 SPINT4-201ENST00000279058 512 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
BDNFP23560 RNA5SP374-201ENST00000362939 125 ntBASIC3.42□□□□□ -1.86
BDNFP23560 MIR483-201ENST00000385070 76 ntBASIC3.42□□□□□ -1.86
BDNFP23560 SNORA26.7-201ENST00000391288 122 ntBASIC3.42□□□□□ -1.86
BDNFP23560 RNU4-47P-201ENST00000410876 114 ntBASIC3.42□□□□□ -1.86
BDNFP23560 AL353777.1-201ENST00000425552 326 ntBASIC3.42□□□□□ -1.86
BDNFP23560 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC3.42□□□□□ -1.86
BDNFP23560 RPL36AP53-201ENST00000432891 316 ntBASIC3.42□□□□□ -1.86
BDNFP23560 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC3.42□□□□□ -1.86
BDNFP23560 AC024908.1-202ENST00000441907 764 ntTSL 2 BASIC3.42□□□□□ -1.86
BDNFP23560 MTATP6P30-201ENST00000443540 664 ntBASIC3.42□□□□□ -1.86
BDNFP23560 AL606662.1-201ENST00000445763 553 ntBASIC3.42□□□□□ -1.86
BDNFP23560 FGF14-AS1-202ENST00000451630 321 ntTSL 2 BASIC3.42□□□□□ -1.86
BDNFP23560 MTATP6P7-201ENST00000453315 681 ntBASIC3.42□□□□□ -1.86
BDNFP23560 RN7SL432P-201ENST00000484057 298 ntBASIC3.42□□□□□ -1.86
BDNFP23560 AC116347.2-201ENST00000514912 523 ntBASIC3.42□□□□□ -1.86
BDNFP23560 RNU6-415P-201ENST00000516252 97 ntBASIC3.42□□□□□ -1.86
BDNFP23560 RN7SKP265-201ENST00000516448 223 ntBASIC3.42□□□□□ -1.86
BDNFP23560 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC3.42□□□□□ -1.86
BDNFP23560 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC3.42□□□□□ -1.86
BDNFP23560 AC011979.2-201ENST00000527568 352 ntBASIC3.42□□□□□ -1.86
BDNFP23560 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC3.42□□□□□ -1.86
BDNFP23560 MIR5004-201ENST00000579078 107 ntBASIC3.42□□□□□ -1.86
BDNFP23560 MIR2682-201ENST00000580305 110 ntBASIC3.42□□□□□ -1.86
BDNFP23560 MIR3146-201ENST00000580367 79 ntBASIC3.42□□□□□ -1.86
BDNFP23560 MIR7515HG-243ENST00000591400 1067 ntTSL 5 BASIC3.42□□□□□ -1.86
BDNFP23560 AC018714.1-201ENST00000605028 208 ntBASIC3.42□□□□□ -1.86
BDNFP23560 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC3.42□□□□□ -1.86
BDNFP23560 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC3.42□□□□□ -1.86
BDNFP23560 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
BDNFP23560 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.42□□□□□ -1.86
BDNFP23560 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC3.42□□□□□ -1.86
BDNFP23560 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC3.42□□□□□ -1.86
BDNFP23560 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.41□□□□□ -1.86
BDNFP23560 VIM-AS1-201ENST00000437232 1351 ntTSL 2 BASIC3.41□□□□□ -1.86
BDNFP23560 Y_RNA.46-201ENST00000362695 102 ntBASIC3.41□□□□□ -1.86
BDNFP23560 RNU6-1214P-201ENST00000363650 109 ntBASIC3.41□□□□□ -1.86
BDNFP23560 RNA5-8SP4-201ENST00000365096 150 ntBASIC3.41□□□□□ -1.86
BDNFP23560 CD2-201ENST00000369477 478 ntTSL 2 BASIC3.41□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 96.6 ms